IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
861	 38.63	0	892129..892449	+	106	46907085	sugE-2	LMOf2365_0871	-	SugE protein
862	 40.88	0	892599..893711	+	370	46907086	ddl	LMOf2365_0872	-	D-alanyl-alanine synthetase A
863	 39.37	0	893775..895148	+	457	46907087	murF	LMOf2365_0873	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
864	 39.36	0	895215..895928	+	237	46907088	-	LMOf2365_0874	-	alpha/beta fold family hydrolase
865	 38.50	0	895940..896965	-	341	46907089	-	LMOf2365_0875	-	DNA-binding transcriptional regulator, putative
866	 38.56	0	897209..898528	+	439	46907090	-	LMOf2365_0876	-	sugar ABC transporter, sugar-binding protein
867	 38.34	0	898525..899403	+	292	46907091	-	LMOf2365_0877	-	sugar ABC transporter, permease protein
868	 37.77	0	899390..900223	+	277	46907092	-	LMOf2365_0878	-	sugar ABC transporter, permease protein
869	 40.31	0	900239..901771	+	510	46907093	treC-1	LMOf2365_0879	-	trehalose-6-phosphate hydrolase
870	 40.77	0	901773..902687	+	304	46907094	-	LMOf2365_0880	-	hypothetical protein
871	 38.86	0	902709..903776	+	355	46907095	-	LMOf2365_0881	-	hypothetical protein
872	 42.17	+1	903773..905446	+	557	46907096	-	LMOf2365_0882	-	phosphoglucomutase/phosphomannomutase family protein
873	 30.56	-2	905422..905529	+	35	46907097	-	LMOf2365_0883	-	hypothetical protein
874	 43.27	+1	905902..907461	+	519	46907098	-	LMOf2365_0884	-	ATP-dependent RNA helicase DeaD
875	 25.42	-2	907581..907757	+	58	46907099	-	LMOf2365_0885	-	hypothetical protein
876	 34.97	0	907905..908393	+	162	46907100	-	LMOf2365_0886	-	hypothetical protein
877	 33.69	-1	908425..908982	-	185	46907101	-	LMOf2365_0887	-	hypothetical protein
878	 36.24	0	909084..910082	+	332	46907102	-	LMOf2365_0888	-	hypothetical protein
879	 36.54	0	910099..910410	+	103	46907103	-	LMOf2365_0889	-	hypothetical protein
880	 40.11	0	910443..910796	-	117	46907104	-	LMOf2365_0890	-	hypothetical protein
881	 41.09	0	910930..912090	+	386	46907105	-	LMOf2365_0891	-	major facilitator family transporter
882	 37.25	0	912298..914316	+	672	46907106	-	LMOf2365_0892	-	PTS system IIA component domain-containing protein
883	 33.94	-1	914331..914660	+	109	46907107	-	LMOf2365_0893	-	PTS system, beta-glucoside-specific, IIA component
884	 35.71	0	914661..914996	+	111	46907108	-	LMOf2365_0894	-	PTS system, beta-glucoside-specific, IIB component
885	 39.89	0	915016..916341	+	441	46907109	-	LMOf2365_0895	-	PTS system, beta-glucoside-specific, IIC component
886	 40.33	0	916362..917090	+	242	46907110	-	LMOf2365_0896	-	glucosamine-6-phosphate isomerase, putative
887	 45.42	+2	917192..918043	+	283	46907111	-	LMOf2365_0897	-	aldo/keto reductase family oxidoreductase
888	 39.84	0	918061..918828	+	255	46907112	-	LMOf2365_0898	-	hypothetical protein
889	 37.94	0	918946..920334	+	462	46907113	-	LMOf2365_0899	-	lysM domain-containing protein
890	 36.69	0	920380..920856	-	158	46907114	-	LMOf2365_0900	-	hypothetical protein
891	 39.13	0	920989..921471	+	160	46907115	-	LMOf2365_0901	-	hypothetical protein
892	 39.63	0	921464..922939	+	491	46907116	-	LMOf2365_0902	-	hypothetical protein
893	 41.59	+1	923089..924468	+	459	46907117	hemG	LMOf2365_0903	-	protoporphyrinogen oxidase
894	 36.97	0	924470..924826	+	118	46907118	acpS	LMOf2365_0904	-	holo-(acyl-carrier-protein) synthase
895	 41.82	+1	924845..925951	+	368	46907119	alr	LMOf2365_0905	-	alanine racemase
896	 41.58	+1	926157..926435	+	92	46907120	-	LMOf2365_0906	-	hypothetical protein
897	 37.99	0	927036..927872	+	278	46907121	rsbR	LMOf2365_0908	-	modulator protein RsbR
898	 38.38	0	927878..928234	+	118	46907122	rsbS	LMOf2365_0909	-	anti-sigma factor B antagonist
899	 37.89	0	928231..928647	+	138	46907123	rsbT	LMOf2365_0910	-	anti-sigma B factor RsbT
900	 36.32	0	928664..929668	+	334	46907124	-	LMOf2365_0911	-	sigma factor B regulator protein
901	 36.52	0	929818..930162	+	114	46907125	-	LMOf2365_0912	-	anti-sigma factor antagonist
902	 36.71	0	930146..930619	+	157	46907126	-	LMOf2365_0913	-	serine-protein kinase RsbW
903	 38.72	0	930597..931376	+	259	46907127	sigB	LMOf2365_0914	-	RNA polymerase sigma factor SigB
904	 37.83	0	931377..931976	+	199	46907128	-	LMOf2365_0915	-	sigma-B negative effector, putative
905	 40.99	0	932181..933812	+	543	46907129	-	LMOf2365_0916	-	sulfate permease family protein
906	 40.27	0	933883..936060	+	725	46907130	-	LMOf2365_0917	-	S1 RNA-binding domain-containing protein
907	 39.10	0	936060..936527	+	155	46907131	-	LMOf2365_0918	-	hypothetical protein
908	 36.28	0	936896..937336	+	146	46907132	-	LMOf2365_0919	-	hypothetical protein
909	 34.98	0	937352..937837	+	161	46907133	-	LMOf2365_0920	-	hypothetical protein
910	 35.88	0	937892..938284	+	130	46907134	-	LMOf2365_0921	-	hypothetical protein
911	 38.46	0	938430..939716	+	428	46907135	celB	LMOf2365_0922	-	PTS system, cellobiose-specific, IIC component
912	 39.92	0	939797..940510	+	237	46907136	-	LMOf2365_0923	-	GntR family transcriptional regulator
913	 35.96	0	941006..941386	+	126	46907137	-	LMOf2365_0924	-	OsmC/Ohr family protein
914	 33.94	-1	941355..941519	+	54	46907138	-	LMOf2365_0925	-	hypothetical protein
915	 39.41	0	941501..942175	+	224	46907139	-	LMOf2365_0926	-	hypothetical protein
916	 42.77	+1	942306..942803	+	165	46907140	-	LMOf2365_0927	-	hypothetical protein
917	 42.44	+1	942839..944188	+	449	46907141	gor	LMOf2365_0928	-	glutathione reductase
918	 40.59	0	944217..944891	+	224	46907142	-	LMOf2365_0929	-	phosphoglycerate mutase family protein
919	 35.62	0	944934..946070	-	378	46907143	-	LMOf2365_0930	-	hypothetical protein
920	 40.20	0	946211..946603	+	130	46907144	-	LMOf2365_0931	-	GntR family transcriptional regulator
921	 36.87	0	946606..947709	+	367	46907145	-	LMOf2365_0932	-	hypothetical protein
922	 37.50	0	947792..948295	+	167	46907146	-	LMOf2365_0933	-	hypothetical protein
923	 42.07	+1	948409..949221	+	270	46907147	-	LMOf2365_0934	-	formate/nitrite transporter family protein
924	 40.49	0	949446..950912	+	488	46907148	gabD	LMOf2365_0935	-	succinate-semialdehyde dehydrogenase
925	 37.25	0	951056..951361	+	101	46907149	-	LMOf2365_0936	-	PTS system, cellobiose-specific, IIB component
926	 38.46	0	951366..952634	+	422	46907150	-	LMOf2365_0937	-	PTS system, IIC component
927	 37.89	0	952649..952999	+	116	46907151	-	LMOf2365_0938	-	PTS system, beta-glucoside-specific, IIA component
928	 37.95	0	953011..954462	+	483	46907152	bglH-2	LMOf2365_0939	-	beta-glucosidase
929	 36.07	0	954535..956433	+	632	46907153	-	LMOf2365_0940	-	PRD/PTS system IIA 2 domain-containing protein
930	 39.25	0	956725..958296	+	523	46907154	-	LMOf2365_0941	-	ABC transporter, ATP-binding protein
931	 39.39	0	958418..959458	+	346	46907155	-	LMOf2365_0942	-	ABC transporter, permease protein, putative
932	 35.12	0	959477..960316	+	279	46907156	-	LMOf2365_0943	-	hypothetical protein
933	 37.35	0	960405..961325	+	306	46907157	coaA	LMOf2365_0944	-	pantothenate kinase
934	 39.97	0	961441..962163	+	240	46907158	-	LMOf2365_0945	-	ABC transporter, ATP-binding protein
935	 38.89	0	962163..963278	+	371	46907159	-	LMOf2365_0946	-	ABC transporter, permease protein
936	 38.60	0	963331..963957	+	208	46907160	-	LMOf2365_0947	-	TetR family transcriptional regulator
937	 35.88	0	963989..965950	-	653	46907161	-	LMOf2365_0948	-	sulfatase family protein
938	 39.90	0	966209..966832	+	207	46907162	-	LMOf2365_0949	-	DNA-3-methyladenine glycosylase, putative
939	 35.13	0	966941..967609	+	222	46907163	-	LMOf2365_0950	-	sortase family protein
940	 37.98	0	967722..968453	+	243	46907164	-	LMOf2365_0951	-	hypothetical protein
941	 35.54	0	968477..969472	+	331	46907165	-	LMOf2365_0952	-	lipoyltransferase and lipoate-protein ligase family protein
942	 35.15	0	969512..970117	-	201	46907166	-	LMOf2365_0953	-	hypothetical protein
943	 41.01	0	970244..972301	-	685	46907167	-	LMOf2365_0954	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
944	 36.67	0	973818..974327	+	169	46907168	-	LMOf2365_0956	-	RNA methyltransferase
945	 39.81	0	974340..975080	+	246	46907169	-	LMOf2365_0957	-	nitroreductase family protein
946	 29.63	-2	975130..975291	-	53	46907170	-	LMOf2365_0958	-	hypothetical protein
947	 38.78	0	975379..975837	-	152	46907171	-	LMOf2365_0959	-	low molecular weight phosphotyrosine protein phosphatase family protein
948	 35.48	0	975850..976596	-	248	46907172	-	LMOf2365_0960	-	hypothetical protein
949	 37.25	0	976692..977660	-	322	46907173	-	LMOf2365_0961	-	hypothetical protein
950	 35.94	0	977672..979477	-	601	46907174	-	LMOf2365_0962	-	histidine kinase domain-containing protein
951	 35.88	0	979680..980150	+	156	46907175	-	LMOf2365_0963	-	peroxide resistance protein Dpr
952	 37.29	0	980384..980686	+	100	46907176	-	LMOf2365_0964	-	hypothetical protein
953	 38.28	0	980799..981929	+	376	46907177	-	LMOf2365_0965	-	putative lipoprotein
954	 33.77	-1	981939..982166	+	75	46907178	-	LMOf2365_0966	-	hypothetical protein
955	 38.83	0	982365..983582	-	405	46907179	-	LMOf2365_0967	-	transporter, putative
956	 39.71	0	983579..984268	-	229	46907180	-	LMOf2365_0968	-	GntR family transcriptional regulator
957	 32.95	-1	984390..985436	+	348	46907181	-	LMOf2365_0969	-	hypothetical protein
958	 34.67	0	985446..986345	-	299	46907182	-	LMOf2365_0970	-	hypothetical protein
959	 35.28	0	986366..987187	-	273	46907183	-	LMOf2365_0971	-	hypothetical protein
960	 35.08	0	987345..987803	+	152	46907184	-	LMOf2365_0972	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.