IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
764	 35.04	0	781086..781790	+	234	46906988	-	LMOf2365_0773	-	ABC transporter, permease protein, putative
765	 36.03	0	781805..783805	+	666	46906989	-	LMOf2365_0774	-	ABC transporter, ATP-binding/permease protein, putative
766	 36.31	0	783834..784337	+	167	46906990	-	LMOf2365_0775	-	hypothetical protein
767	 39.90	0	784776..785612	+	278	46906991	-	LMOf2365_0776	-	alpha/beta fold family hydrolase
768	 32.75	-1	785738..786418	+	226	46906992	-	LMOf2365_0777	-	Crp family transcriptional regulator
769	 38.56	0	786499..787110	+	203	46906993	-	LMOf2365_0778	-	hypothetical protein
770	 39.29	0	787225..788046	+	273	46906994	-	LMOf2365_0779	-	lipase/acylhydrolase, putative
771	 41.17	0	788018..788923	+	301	46906995	-	LMOf2365_0780	-	ABC transporter, ATP-binding protein
772	 43.32	+1	788916..789896	+	326	46906996	-	LMOf2365_0781	-	hypothetical protein
773	 40.97	0	790023..790913	+	296	46906997	-	LMOf2365_0782	-	hypothetical protein
774	 40.42	0	790910..791869	+	319	46906998	-	LMOf2365_0783	-	glyoxalase family protein
775	 43.02	+1	791876..792484	+	202	46906999	-	LMOf2365_0784	-	hypothetical protein
776	 39.13	0	792494..793114	+	206	46907000	-	LMOf2365_0785	-	hypothetical protein
777	 39.94	0	793442..794698	+	418	46907001	-	LMOf2365_0786	-	hypothetical protein
778	 43.07	+1	794764..795636	+	290	46907002	-	LMOf2365_0787	-	Ser/Thr protein phosphatase family protein
779	 38.59	0	795642..796631	+	329	46907003	-	LMOf2365_0788	-	lipoyltransferase and lipoate-protein ligase family protein
780	 30.68	-2	796764..797516	+	250	46907004	-	LMOf2365_0789	-	hypothetical protein
781	 33.95	-1	797551..798198	+	215	46907005	-	LMOf2365_0790	-	GntR family transcriptional regulator
782	 40.30	0	798239..799228	-	329	46907006	-	LMOf2365_0791	-	alcohol dehydrogenase, zinc-dependent
783	 42.58	+1	799407..800336	+	309	46907007	-	LMOf2365_0792	-	hypothetical protein
784	 36.94	0	800376..800708	+	110	46907008	-	LMOf2365_0793	-	hypothetical protein
785	 42.45	+1	800746..801612	-	288	46907009	-	LMOf2365_0794	-	ROK family protein
786	 38.80	0	801770..802153	+	127	46907010	-	LMOf2365_0795	-	hypothetical protein
787	 33.33	-1	802609..802959	+	116	46907011	-	LMOf2365_0796	-	hypothetical protein
788	 39.10	0	803162..803629	-	155	46907012	-	LMOf2365_0797	-	hypothetical protein
789	 40.96	0	803811..804689	-	292	46907013	-	LMOf2365_0798	-	mannose-specific PTS system protein IID
790	 42.03	+1	804707..805522	-	271	46907014	-	LMOf2365_0799	-	PTS system mannose/fructose/sorbose family IIC subunit
791	 38.37	0	806904..809720	-	938	46907015	-	LMOf2365_0801	-	sigma-54 dependent transcriptional regulator
792	 36.32	0	809913..810548	+	211	46907016	-	LMOf2365_0802	-	acyl-carrier protein phosphodiesterase, putative
793	 37.76	0	810742..812118	+	458	46907017	-	LMOf2365_0803	-	amino acid permease family protein
794	 41.23	0	812383..816813	+	1476	46907018	-	LMOf2365_0804	-	BadF/BadG/BcrA/BcrD family ATPase
795	 35.08	0	816991..819171	+	726	46907019	-	LMOf2365_0805	-	cell wall surface anchor family protein
796	 34.86	0	819288..820136	-	282	46907020	-	LMOf2365_0806	-	PhzF family phenazine biosynthesis protein
797	 39.62	0	820163..820639	-	158	46907021	-	LMOf2365_0807	-	EbsC protein
798	 34.72	0	820763..821413	+	216	46907022	-	LMOf2365_0808	-	hypothetical protein
799	 36.48	0	821519..822409	+	296	46907023	-	LMOf2365_0809	-	carbon-nitrogen family hydrolase
800	 42.02	+1	822444..823145	-	233	46907024	-	LMOf2365_0810	-	hypothetical protein
801	 40.34	0	823260..823901	-	213	46907025	-	LMOf2365_0811	-	hypothetical protein
802	 39.09	0	823985..824905	-	306	46907026	-	LMOf2365_0812	-	RarD protein
803	 39.74	0	825014..825544	-	176	46907027	-	LMOf2365_0813	-	YceI like family protein
804	 35.93	0	825800..826261	+	153	46907028	-	LMOf2365_0814	-	MarR family transcriptional regulator
805	 39.90	0	826313..827773	-	486	46907029	-	LMOf2365_0815	-	lysine-specific permease
806	 35.43	0	828129..828890	-	253	46907030	-	LMOf2365_0816	-	blue-light photoreceptor
807	 37.01	0	829043..829396	+	117	46907031	-	LMOf2365_0817	-	hypothetical protein
808	 33.80	-1	829551..830189	+	212	46907032	-	LMOf2365_0818	-	hypothetical protein
809	 39.68	0	830318..832366	+	682	46907033	-	LMOf2365_0819	-	Na+/H+ antiporter
810	 31.43	-1	832406..832879	-	157	46907034	-	LMOf2365_0820	-	hypothetical protein
811	 32.24	-1	832907..833365	-	152	46907035	-	LMOf2365_0821	-	hypothetical protein
812	 37.20	0	833575..834117	+	180	46907036	-	LMOf2365_0822	-	DNA-binding protein
813	 39.09	0	834133..835227	+	364	46907037	-	LMOf2365_0823	-	spermidine/putrescine ABC transporter, ATP-binding protein
814	 36.17	0	835227..836036	+	269	46907038	-	LMOf2365_0824	-	spermidine/putrescine ABC transporter, permease protein
815	 38.66	0	836033..836839	+	268	46907039	-	LMOf2365_0825	-	spermidine/putrescine ABC transporter, permease protein
816	 38.92	0	836836..837909	+	357	46907040	-	LMOf2365_0826	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
817	 39.17	0	838039..838740	+	233	46907041	cah	LMOf2365_0827	-	carbonic anhydrase
818	 43.09	+1	838808..839350	+	180	46907042	-	LMOf2365_0828	-	HD domain-containing protein
819	 42.38	+1	839486..840358	+	290	46907043	scrK	LMOf2365_0829	-	fructokinase
820	 44.77	+1	840443..841369	+	308	46907044	-	LMOf2365_0830	-	enoyl-(acyl-carrier-protein) reductase
821	 43.51	+1	841585..841869	+	94	46907045	-	LMOf2365_0831	-	hypothetical protein
822	 45.53	+2	841870..842238	+	122	46907046	-	LMOf2365_0832	-	hypothetical protein
823	 41.46	0	842235..843710	+	491	46907047	-	LMOf2365_0833	-	hypothetical protein
824	 27.78	-2	843715..844146	+	143	46907048	-	LMOf2365_0834	-	hypothetical protein
825	 27.47	-2	844224..844496	+	90	46907049	-	LMOf2365_0835	-	hypothetical protein
826	 42.47	+1	844631..845035	-	134	46907050	-	LMOf2365_0836	-	hypothetical protein
827	 41.62	+1	845260..847890	+	876	46907051	-	LMOf2365_0837	-	cation transporter E1-E2 family ATPase
828	 35.92	0	847905..848753	+	282	46907052	-	LMOf2365_0838	-	hypothetical protein
829	 38.89	0	848863..849420	+	185	46907053	-	LMOf2365_0839	-	acetyltransferase
830	 34.39	0	849437..850099	+	220	46907054	-	LMOf2365_0840	-	hypothetical protein
831	 41.54	+1	850115..850504	-	129	46907055	-	LMOf2365_0841	-	MerR family transcriptional regulator
832	 38.30	0	850625..851449	+	274	46907056	-	LMOf2365_0842	-	aldo/keto reductase family oxidoreductase
833	 41.38	0	851528..852496	+	322	46907057	-	LMOf2365_0843	-	hypothetical protein
834	 42.39	+1	852537..853817	+	426	46907058	-	LMOf2365_0844	-	hydroxymethylglutaryl-CoA reductase, degradative
835	 40.18	0	854016..855650	+	544	46907059	-	LMOf2365_0845	-	Na/Pi-cotransporter family protein
836	 41.80	+1	855804..859451	+	1215	46907060	-	LMOf2365_0846	-	pyruvate flavodoxin/ferredoxin oxidoreductase
837	 37.00	0	859701..861662	-	653	46907061	-	LMOf2365_0847	-	phosphatase, putative
838	 36.40	0	861777..862688	-	303	46907062	-	LMOf2365_0848	-	hypothetical protein
839	 28.42	-2	863344..863628	+	94	46907063	-	LMOf2365_0849	-	IS3 family transposase OrfA
840	 32.44	-1	863820..864710	+	296	46907064	-	LMOf2365_0850	-	transcriptional activator, putative
841	 30.49	-2	864785..865558	+	257	46907065	-	LMOf2365_0851	-	hypothetical protein
842	 35.22	0	865551..866555	+	334	46907066	-	LMOf2365_0852	-	cell wall surface anchor family protein
843	 34.30	-1	866598..867011	-	137	46907067	-	LMOf2365_0853	-	phosphate-starvation-inducible protein PsiE
844	 39.62	0	867184..868821	+	545	46907068	-	LMOf2365_0854	-	ABC transporter, ATP-binding protein
845	 36.72	0	869115..870500	+	461	46907069	uhpT	LMOf2365_0855	-	sugar phosphate antiporter
846	 42.33	+1	870608..871819	-	403	46907070	tetA	LMOf2365_0856	-	tetracycline resistance protein
847	 35.67	0	871949..872419	-	156	46907071	-	LMOf2365_0857	-	MarR family transcriptional regulator
848	 42.53	+1	872621..875263	+	880	46907072	-	LMOf2365_0858	-	cation transport ATPase family protein
849	 36.87	0	875715..881798	+	2027	46907073	-	LMOf2365_0859	-	cell wall surface anchor family protein
850	 40.70	0	881936..882193	-	85	46907074	-	LMOf2365_0860	-	cytochrome c oxidase, subunit IV, putative
851	 39.42	0	882272..882649	+	125	46907075	-	LMOf2365_0861	-	endoribonuclease L-PSP, putative
852	 41.21	0	882906..884009	+	367	46907076	-	LMOf2365_0862	-	vitamin-B12 independent methionine synthase family protein
853	 35.06	0	884114..885214	+	366	46907077	-	LMOf2365_0863	-	excinuclease ABC subunit C
854	 37.21	0	885384..886826	+	480	46907078	-	LMOf2365_0864	-	glutamine ABC transporter, permease/substrate-binding protein
855	 37.86	0	886819..887547	+	242	46907079	-	LMOf2365_0865	-	glutamine ABC transporter, ATP-binding protein
856	 37.45	0	887596..889443	-	615	46907080	-	LMOf2365_0866	-	amidase
857	 31.67	-1	889977..890156	+	59	46907081	-	LMOf2365_0867	-	hypothetical protein
858	 34.52	0	890376..891134	+	252	46907082	-	LMOf2365_0868	-	hypothetical protein
859	 37.66	0	891214..891768	+	184	46907083	-	LMOf2365_0869	-	TetR family transcriptional regulator
860	 38.89	0	891785..892126	+	113	46907084	sugE-1	LMOf2365_0870	-	SugE protein
861	 38.63	0	892129..892449	+	106	46907085	sugE-2	LMOf2365_0871	-	SugE protein
862	 40.88	0	892599..893711	+	370	46907086	ddl	LMOf2365_0872	-	D-alanyl-alanine synthetase A
863	 39.37	0	893775..895148	+	457	46907087	murF	LMOf2365_0873	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.