IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
731	 36.13	0	752235..752663	+	142	46906955	-	LMOf2365_0740	-	hypothetical protein
732	 41.81	+1	752683..754203	+	506	46906956	flgK	LMOf2365_0741	-	flagellar hook-associated protein FlgK
733	 37.90	0	754215..755090	+	291	46906957	flgL	LMOf2365_0742	-	flagellar hook-associated protein FlgL
734	 40.85	0	755102..756391	+	429	161611352	fliD	LMOf2365_0743	-	flagellar capping protein
735	 33.85	-1	756410..756796	+	128	46906959	-	LMOf2365_0744	-	flagellar protein FliS, putative
736	 33.33	-1	756768..757049	+	93	46906960	-	LMOf2365_0745	-	hypothetical protein
737	 41.79	+1	757070..757471	+	133	46906961	flgB	LMOf2365_0746	-	flagellar basal body rod protein FlgB
738	 41.85	+1	757483..757893	+	136	46906962	flgC	LMOf2365_0747	-	flagellar basal body rod protein FlgC
739	 40.07	0	757910..758206	+	98	46906963	fliE	LMOf2365_0748	-	flagellar hook-basal body protein FliE
740	 41.44	0	758274..759926	+	550	46906964	fliF	LMOf2365_0749	-	flagellar MS-ring protein
741	 40.83	0	759929..761035	+	368	46906965	fliG	LMOf2365_0750	-	flagellar motor switch protein G
742	 39.25	0	761022..761714	+	230	46906966	fliH	LMOf2365_0751	-	flagellar assembly protein H
743	 42.86	+1	761711..763012	+	433	46906967	fliI	LMOf2365_0752	-	flagellum-specific ATP synthase
744	 41.55	+1	763029..763697	+	222	46906968	-	LMOf2365_0753	-	Slt family transglycosylase
745	 37.67	0	763711..764355	+	214	46906969	-	LMOf2365_0754	-	hypothetical protein
746	 40.37	0	764474..764800	+	108	46906970	-	LMOf2365_0755	-	PadR family transcriptional regulator
747	 39.20	0	764800..765123	+	107	46906971	-	LMOf2365_0756	-	hypothetical protein
748	 39.20	0	765166..765813	-	215	46906972	-	LMOf2365_0757	-	fibronectin-binding protein
749	 42.75	+1	766084..767814	+	576	46906973	-	LMOf2365_0758	-	pyruvate oxidase
750	 38.48	0	767976..769781	+	601	46906974	-	LMOf2365_0759	-	methyl-accepting chemotaxis protein, putative
751	 40.47	0	769794..770522	+	242	46906975	-	LMOf2365_0760	-	hypothetical protein
752	 38.03	0	770565..770777	-	70	46906976	-	LMOf2365_0761	-	hypothetical protein
753	 39.48	0	771225..773030	+	601	46906977	glmS	LMOf2365_0762	-	D-fructose-6-phosphate amidotransferase
754	 41.43	0	773143..773883	+	246	46906978	-	LMOf2365_0763	-	riboflavin kinase/FMN adenylyltransferase, putative
755	 39.58	0	773966..774445	+	159	46906979	-	LMOf2365_0764	-	hypothetical protein
756	 34.51	0	774459..774797	+	112	46906980	-	LMOf2365_0765	-	hypothetical protein
757	 39.51	0	774942..775346	+	134	46906981	-	LMOf2365_0766	-	hypothetical protein
758	 29.73	-2	775656..775766	+	36	46906982	-	LMOf2365_0767	-	hypothetical protein
759	 37.32	0	776040..777944	+	634	46906983	-	LMOf2365_0768	-	cell wall surface anchor family protein
760	 37.45	0	778221..778730	+	169	46906984	-	LMOf2365_0769	-	DNA-binding protein
761	 33.33	-1	779117..779776	-	219	46906985	-	LMOf2365_0770	-	hypothetical protein
762	 32.80	-1	780039..780416	+	125	46906986	-	LMOf2365_0771	-	GntR family transcriptional regulator
763	 34.93	0	780400..781089	+	229	46906987	-	LMOf2365_0772	-	ABC transporter, ATP-binding protein
764	 35.04	0	781086..781790	+	234	46906988	-	LMOf2365_0773	-	ABC transporter, permease protein, putative
765	 36.03	0	781805..783805	+	666	46906989	-	LMOf2365_0774	-	ABC transporter, ATP-binding/permease protein, putative
766	 36.31	0	783834..784337	+	167	46906990	-	LMOf2365_0775	-	hypothetical protein
767	 39.90	0	784776..785612	+	278	46906991	-	LMOf2365_0776	-	alpha/beta fold family hydrolase
768	 32.75	-1	785738..786418	+	226	46906992	-	LMOf2365_0777	-	Crp family transcriptional regulator
769	 38.56	0	786499..787110	+	203	46906993	-	LMOf2365_0778	-	hypothetical protein
770	 39.29	0	787225..788046	+	273	46906994	-	LMOf2365_0779	-	lipase/acylhydrolase, putative
771	 41.17	0	788018..788923	+	301	46906995	-	LMOf2365_0780	-	ABC transporter, ATP-binding protein
772	 43.32	+1	788916..789896	+	326	46906996	-	LMOf2365_0781	-	hypothetical protein
773	 40.97	0	790023..790913	+	296	46906997	-	LMOf2365_0782	-	hypothetical protein
774	 40.42	0	790910..791869	+	319	46906998	-	LMOf2365_0783	-	glyoxalase family protein
775	 43.02	+1	791876..792484	+	202	46906999	-	LMOf2365_0784	-	hypothetical protein
776	 39.13	0	792494..793114	+	206	46907000	-	LMOf2365_0785	-	hypothetical protein
777	 39.94	0	793442..794698	+	418	46907001	-	LMOf2365_0786	-	hypothetical protein
778	 43.07	+1	794764..795636	+	290	46907002	-	LMOf2365_0787	-	Ser/Thr protein phosphatase family protein
779	 38.59	0	795642..796631	+	329	46907003	-	LMOf2365_0788	-	lipoyltransferase and lipoate-protein ligase family protein
780	 30.68	-2	796764..797516	+	250	46907004	-	LMOf2365_0789	-	hypothetical protein
781	 33.95	-1	797551..798198	+	215	46907005	-	LMOf2365_0790	-	GntR family transcriptional regulator
782	 40.30	0	798239..799228	-	329	46907006	-	LMOf2365_0791	-	alcohol dehydrogenase, zinc-dependent
783	 42.58	+1	799407..800336	+	309	46907007	-	LMOf2365_0792	-	hypothetical protein
784	 36.94	0	800376..800708	+	110	46907008	-	LMOf2365_0793	-	hypothetical protein
785	 42.45	+1	800746..801612	-	288	46907009	-	LMOf2365_0794	-	ROK family protein
786	 38.80	0	801770..802153	+	127	46907010	-	LMOf2365_0795	-	hypothetical protein
787	 33.33	-1	802609..802959	+	116	46907011	-	LMOf2365_0796	-	hypothetical protein
788	 39.10	0	803162..803629	-	155	46907012	-	LMOf2365_0797	-	hypothetical protein
789	 40.96	0	803811..804689	-	292	46907013	-	LMOf2365_0798	-	mannose-specific PTS system protein IID
790	 42.03	+1	804707..805522	-	271	46907014	-	LMOf2365_0799	-	PTS system mannose/fructose/sorbose family IIC subunit
791	 38.37	0	806904..809720	-	938	46907015	-	LMOf2365_0801	-	sigma-54 dependent transcriptional regulator
792	 36.32	0	809913..810548	+	211	46907016	-	LMOf2365_0802	-	acyl-carrier protein phosphodiesterase, putative
793	 37.76	0	810742..812118	+	458	46907017	-	LMOf2365_0803	-	amino acid permease family protein
794	 41.23	0	812383..816813	+	1476	46907018	-	LMOf2365_0804	-	BadF/BadG/BcrA/BcrD family ATPase
795	 35.08	0	816991..819171	+	726	46907019	-	LMOf2365_0805	-	cell wall surface anchor family protein
796	 34.86	0	819288..820136	-	282	46907020	-	LMOf2365_0806	-	PhzF family phenazine biosynthesis protein
797	 39.62	0	820163..820639	-	158	46907021	-	LMOf2365_0807	-	EbsC protein
798	 34.72	0	820763..821413	+	216	46907022	-	LMOf2365_0808	-	hypothetical protein
799	 36.48	0	821519..822409	+	296	46907023	-	LMOf2365_0809	-	carbon-nitrogen family hydrolase
800	 42.02	+1	822444..823145	-	233	46907024	-	LMOf2365_0810	-	hypothetical protein
801	 40.34	0	823260..823901	-	213	46907025	-	LMOf2365_0811	-	hypothetical protein
802	 39.09	0	823985..824905	-	306	46907026	-	LMOf2365_0812	-	RarD protein
803	 39.74	0	825014..825544	-	176	46907027	-	LMOf2365_0813	-	YceI like family protein
804	 35.93	0	825800..826261	+	153	46907028	-	LMOf2365_0814	-	MarR family transcriptional regulator
805	 39.90	0	826313..827773	-	486	46907029	-	LMOf2365_0815	-	lysine-specific permease
806	 35.43	0	828129..828890	-	253	46907030	-	LMOf2365_0816	-	blue-light photoreceptor
807	 37.01	0	829043..829396	+	117	46907031	-	LMOf2365_0817	-	hypothetical protein
808	 33.80	-1	829551..830189	+	212	46907032	-	LMOf2365_0818	-	hypothetical protein
809	 39.68	0	830318..832366	+	682	46907033	-	LMOf2365_0819	-	Na+/H+ antiporter
810	 31.43	-1	832406..832879	-	157	46907034	-	LMOf2365_0820	-	hypothetical protein
811	 32.24	-1	832907..833365	-	152	46907035	-	LMOf2365_0821	-	hypothetical protein
812	 37.20	0	833575..834117	+	180	46907036	-	LMOf2365_0822	-	DNA-binding protein
813	 39.09	0	834133..835227	+	364	46907037	-	LMOf2365_0823	-	spermidine/putrescine ABC transporter, ATP-binding protein
814	 36.17	0	835227..836036	+	269	46907038	-	LMOf2365_0824	-	spermidine/putrescine ABC transporter, permease protein
815	 38.66	0	836033..836839	+	268	46907039	-	LMOf2365_0825	-	spermidine/putrescine ABC transporter, permease protein
816	 38.92	0	836836..837909	+	357	46907040	-	LMOf2365_0826	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
817	 39.17	0	838039..838740	+	233	46907041	cah	LMOf2365_0827	-	carbonic anhydrase
818	 43.09	+1	838808..839350	+	180	46907042	-	LMOf2365_0828	-	HD domain-containing protein
819	 42.38	+1	839486..840358	+	290	46907043	scrK	LMOf2365_0829	-	fructokinase
820	 44.77	+1	840443..841369	+	308	46907044	-	LMOf2365_0830	-	enoyl-(acyl-carrier-protein) reductase
821	 43.51	+1	841585..841869	+	94	46907045	-	LMOf2365_0831	-	hypothetical protein
822	 45.53	+2	841870..842238	+	122	46907046	-	LMOf2365_0832	-	hypothetical protein
823	 41.46	0	842235..843710	+	491	46907047	-	LMOf2365_0833	-	hypothetical protein
824	 27.78	-2	843715..844146	+	143	46907048	-	LMOf2365_0834	-	hypothetical protein
825	 27.47	-2	844224..844496	+	90	46907049	-	LMOf2365_0835	-	hypothetical protein
826	 42.47	+1	844631..845035	-	134	46907050	-	LMOf2365_0836	-	hypothetical protein
827	 41.62	+1	845260..847890	+	876	46907051	-	LMOf2365_0837	-	cation transporter E1-E2 family ATPase
828	 35.92	0	847905..848753	+	282	46907052	-	LMOf2365_0838	-	hypothetical protein
829	 38.89	0	848863..849420	+	185	46907053	-	LMOf2365_0839	-	acetyltransferase
830	 34.39	0	849437..850099	+	220	46907054	-	LMOf2365_0840	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.