IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
704	 40.66	0	726700..726972	+	90	46906928	fliQ	LMOf2365_0713	-	flagellar biosynthesis protein FliQ
705	 37.14	0	726975..727736	+	253	46906929	fliR	LMOf2365_0714	-	flagellar biosynthesis protein FliR
706	 41.17	0	727752..728798	+	348	46906930	flhB	LMOf2365_0715	-	flagellar biosynthesis protein FlhB
707	 41.52	+1	728845..730920	+	691	46906931	flhA	LMOf2365_0716	-	flagellar biosynthesis protein FlhA
708	 41.99	+1	730942..732165	+	407	46906932	-	LMOf2365_0717	-	flagellar biosynthesis regulator FlhF
709	 43.08	+1	732162..732941	+	259	46906933	flgG	LMOf2365_0718	-	flagellar basal body rod protein FlgG
710	 39.54	0	732970..733758	+	262	46906934	cheR	LMOf2365_0719	-	chemotaxis protein methyltransferase CheR
711	 37.50	0	733783..734118	+	111	46906935	-	LMOf2365_0720	-	hypothetical protein
712	 43.66	+1	734145..734996	+	283	46906936	motA	LMOf2365_0721	-	flagellar motor protein MotA
713	 42.27	+1	734956..735783	+	275	46906937	motB	LMOf2365_0722	-	chemotaxis protein MotB
714	 37.65	0	735784..736293	+	169	46906938	-	LMOf2365_0723	-	hypothetical protein
715	 38.30	0	736316..738229	+	637	46906939	-	LMOf2365_0724	-	glycosyl transferase, group 2 family protein
716	 37.40	0	738242..739150	+	302	46906940	cheV	LMOf2365_0725	-	chemotaxis protein CheV
717	 38.77	0	739388..740251	+	287	46906941	-	LMOf2365_0726	-	flagellin
718	 41.94	+1	740526..740885	+	119	46906942	cheY	LMOf2365_0727	-	chemotaxis protein CheY
719	 40.66	0	740905..742761	+	618	46906943	cheA	LMOf2365_0728	-	chemotaxis protein CheA
720	 44.00	+1	742774..743073	+	99	46906944	-	LMOf2365_0729	-	flagellar motor switch protein
721	 37.96	0	743092..743502	+	136	46906945	-	LMOf2365_0730	-	hypothetical protein
722	 42.88	+1	743518..744564	+	348	46906946	-	LMOf2365_0731	-	hypothetical protein
723	 40.66	0	744566..744988	+	140	46906947	flgD	LMOf2365_0732	-	flagellar basal body rod modification protein
724	 42.72	+1	745008..746243	+	411	46906948	flgE	LMOf2365_0733	-	flagellar hook protein FlgE
725	 37.97	0	746257..746493	+	78	46906949	-	LMOf2365_0734	-	flagellar motor switch protein
726	 41.09	0	746514..747506	+	330	46906950	fliM	LMOf2365_0735	-	flagellar motor switch protein FliM
727	 40.00	0	747542..749056	+	504	46906951	-	LMOf2365_0736	-	flagellar motor switch protein
728	 40.98	0	749080..750465	+	461	46906952	-	LMOf2365_0737	-	hypothetical protein
729	 36.08	0	750488..751654	+	388	46906953	-	LMOf2365_0738	-	hypothetical protein
730	 33.98	-1	751761..752225	+	154	46906954	-	LMOf2365_0739	-	hypothetical protein
731	 36.13	0	752235..752663	+	142	46906955	-	LMOf2365_0740	-	hypothetical protein
732	 41.81	+1	752683..754203	+	506	46906956	flgK	LMOf2365_0741	-	flagellar hook-associated protein FlgK
733	 37.90	0	754215..755090	+	291	46906957	flgL	LMOf2365_0742	-	flagellar hook-associated protein FlgL
734	 40.85	0	755102..756391	+	429	161611352	fliD	LMOf2365_0743	-	flagellar capping protein
735	 33.85	-1	756410..756796	+	128	46906959	-	LMOf2365_0744	-	flagellar protein FliS, putative
736	 33.33	-1	756768..757049	+	93	46906960	-	LMOf2365_0745	-	hypothetical protein
737	 41.79	+1	757070..757471	+	133	46906961	flgB	LMOf2365_0746	-	flagellar basal body rod protein FlgB
738	 41.85	+1	757483..757893	+	136	46906962	flgC	LMOf2365_0747	-	flagellar basal body rod protein FlgC
739	 40.07	0	757910..758206	+	98	46906963	fliE	LMOf2365_0748	-	flagellar hook-basal body protein FliE
740	 41.44	0	758274..759926	+	550	46906964	fliF	LMOf2365_0749	-	flagellar MS-ring protein
741	 40.83	0	759929..761035	+	368	46906965	fliG	LMOf2365_0750	-	flagellar motor switch protein G
742	 39.25	0	761022..761714	+	230	46906966	fliH	LMOf2365_0751	-	flagellar assembly protein H
743	 42.86	+1	761711..763012	+	433	46906967	fliI	LMOf2365_0752	-	flagellum-specific ATP synthase
744	 41.55	+1	763029..763697	+	222	46906968	-	LMOf2365_0753	-	Slt family transglycosylase
745	 37.67	0	763711..764355	+	214	46906969	-	LMOf2365_0754	-	hypothetical protein
746	 40.37	0	764474..764800	+	108	46906970	-	LMOf2365_0755	-	PadR family transcriptional regulator
747	 39.20	0	764800..765123	+	107	46906971	-	LMOf2365_0756	-	hypothetical protein
748	 39.20	0	765166..765813	-	215	46906972	-	LMOf2365_0757	-	fibronectin-binding protein
749	 42.75	+1	766084..767814	+	576	46906973	-	LMOf2365_0758	-	pyruvate oxidase
750	 38.48	0	767976..769781	+	601	46906974	-	LMOf2365_0759	-	methyl-accepting chemotaxis protein, putative
751	 40.47	0	769794..770522	+	242	46906975	-	LMOf2365_0760	-	hypothetical protein
752	 38.03	0	770565..770777	-	70	46906976	-	LMOf2365_0761	-	hypothetical protein
753	 39.48	0	771225..773030	+	601	46906977	glmS	LMOf2365_0762	-	D-fructose-6-phosphate amidotransferase
754	 41.43	0	773143..773883	+	246	46906978	-	LMOf2365_0763	-	riboflavin kinase/FMN adenylyltransferase, putative
755	 39.58	0	773966..774445	+	159	46906979	-	LMOf2365_0764	-	hypothetical protein
756	 34.51	0	774459..774797	+	112	46906980	-	LMOf2365_0765	-	hypothetical protein
757	 39.51	0	774942..775346	+	134	46906981	-	LMOf2365_0766	-	hypothetical protein
758	 29.73	-2	775656..775766	+	36	46906982	-	LMOf2365_0767	-	hypothetical protein
759	 37.32	0	776040..777944	+	634	46906983	-	LMOf2365_0768	-	cell wall surface anchor family protein
760	 37.45	0	778221..778730	+	169	46906984	-	LMOf2365_0769	-	DNA-binding protein
761	 33.33	-1	779117..779776	-	219	46906985	-	LMOf2365_0770	-	hypothetical protein
762	 32.80	-1	780039..780416	+	125	46906986	-	LMOf2365_0771	-	GntR family transcriptional regulator
763	 34.93	0	780400..781089	+	229	46906987	-	LMOf2365_0772	-	ABC transporter, ATP-binding protein
764	 35.04	0	781086..781790	+	234	46906988	-	LMOf2365_0773	-	ABC transporter, permease protein, putative
765	 36.03	0	781805..783805	+	666	46906989	-	LMOf2365_0774	-	ABC transporter, ATP-binding/permease protein, putative
766	 36.31	0	783834..784337	+	167	46906990	-	LMOf2365_0775	-	hypothetical protein
767	 39.90	0	784776..785612	+	278	46906991	-	LMOf2365_0776	-	alpha/beta fold family hydrolase
768	 32.75	-1	785738..786418	+	226	46906992	-	LMOf2365_0777	-	Crp family transcriptional regulator
769	 38.56	0	786499..787110	+	203	46906993	-	LMOf2365_0778	-	hypothetical protein
770	 39.29	0	787225..788046	+	273	46906994	-	LMOf2365_0779	-	lipase/acylhydrolase, putative
771	 41.17	0	788018..788923	+	301	46906995	-	LMOf2365_0780	-	ABC transporter, ATP-binding protein
772	 43.32	+1	788916..789896	+	326	46906996	-	LMOf2365_0781	-	hypothetical protein
773	 40.97	0	790023..790913	+	296	46906997	-	LMOf2365_0782	-	hypothetical protein
774	 40.42	0	790910..791869	+	319	46906998	-	LMOf2365_0783	-	glyoxalase family protein
775	 43.02	+1	791876..792484	+	202	46906999	-	LMOf2365_0784	-	hypothetical protein
776	 39.13	0	792494..793114	+	206	46907000	-	LMOf2365_0785	-	hypothetical protein
777	 39.94	0	793442..794698	+	418	46907001	-	LMOf2365_0786	-	hypothetical protein
778	 43.07	+1	794764..795636	+	290	46907002	-	LMOf2365_0787	-	Ser/Thr protein phosphatase family protein
779	 38.59	0	795642..796631	+	329	46907003	-	LMOf2365_0788	-	lipoyltransferase and lipoate-protein ligase family protein
780	 30.68	-2	796764..797516	+	250	46907004	-	LMOf2365_0789	-	hypothetical protein
781	 33.95	-1	797551..798198	+	215	46907005	-	LMOf2365_0790	-	GntR family transcriptional regulator
782	 40.30	0	798239..799228	-	329	46907006	-	LMOf2365_0791	-	alcohol dehydrogenase, zinc-dependent
783	 42.58	+1	799407..800336	+	309	46907007	-	LMOf2365_0792	-	hypothetical protein
784	 36.94	0	800376..800708	+	110	46907008	-	LMOf2365_0793	-	hypothetical protein
785	 42.45	+1	800746..801612	-	288	46907009	-	LMOf2365_0794	-	ROK family protein
786	 38.80	0	801770..802153	+	127	46907010	-	LMOf2365_0795	-	hypothetical protein
787	 33.33	-1	802609..802959	+	116	46907011	-	LMOf2365_0796	-	hypothetical protein
788	 39.10	0	803162..803629	-	155	46907012	-	LMOf2365_0797	-	hypothetical protein
789	 40.96	0	803811..804689	-	292	46907013	-	LMOf2365_0798	-	mannose-specific PTS system protein IID
790	 42.03	+1	804707..805522	-	271	46907014	-	LMOf2365_0799	-	PTS system mannose/fructose/sorbose family IIC subunit
791	 38.37	0	806904..809720	-	938	46907015	-	LMOf2365_0801	-	sigma-54 dependent transcriptional regulator
792	 36.32	0	809913..810548	+	211	46907016	-	LMOf2365_0802	-	acyl-carrier protein phosphodiesterase, putative
793	 37.76	0	810742..812118	+	458	46907017	-	LMOf2365_0803	-	amino acid permease family protein
794	 41.23	0	812383..816813	+	1476	46907018	-	LMOf2365_0804	-	BadF/BadG/BcrA/BcrD family ATPase
795	 35.08	0	816991..819171	+	726	46907019	-	LMOf2365_0805	-	cell wall surface anchor family protein
796	 34.86	0	819288..820136	-	282	46907020	-	LMOf2365_0806	-	PhzF family phenazine biosynthesis protein
797	 39.62	0	820163..820639	-	158	46907021	-	LMOf2365_0807	-	EbsC protein
798	 34.72	0	820763..821413	+	216	46907022	-	LMOf2365_0808	-	hypothetical protein
799	 36.48	0	821519..822409	+	296	46907023	-	LMOf2365_0809	-	carbon-nitrogen family hydrolase
800	 42.02	+1	822444..823145	-	233	46907024	-	LMOf2365_0810	-	hypothetical protein
801	 40.34	0	823260..823901	-	213	46907025	-	LMOf2365_0811	-	hypothetical protein
802	 39.09	0	823985..824905	-	306	46907026	-	LMOf2365_0812	-	RarD protein
803	 39.74	0	825014..825544	-	176	46907027	-	LMOf2365_0813	-	YceI like family protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.