IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
630	 37.00	0	656120..656419	+	99	46906854	-	LMOf2365_0638	-	rhodanese-like domain-containing protein
631	 36.95	0	656462..658231	-	589	46906855	-	LMOf2365_0639	-	cell wall anchor domain-containing protein
632	 38.76	0	658392..659018	-	208	46906856	acpD	LMOf2365_0640	-	azoreductase
633	 37.11	0	659187..659636	+	149	46906857	-	LMOf2365_0641	-	MarR family transcriptional regulator
634	 40.02	0	659639..660580	+	313	46906858	-	LMOf2365_0642	-	alcohol dehydrogenase, zinc-dependent
635	 33.71	-1	660675..661208	+	177	46906859	-	LMOf2365_0643	-	acetyltransferase
636	 32.92	-1	661205..661447	-	80	46906860	-	LMOf2365_0644	-	hypothetical protein
637	 34.70	0	661554..663305	+	583	46906861	-	LMOf2365_0645	-	glycerophosphoryl diester phosphodiesterase family protein
638	 33.33	-1	663344..663838	-	164	46906862	-	LMOf2365_0646	-	putative lipoprotein
639	 36.31	0	663918..665060	-	380	46906863	-	LMOf2365_0647	-	protein kinase domain-containing protein
640	 35.31	0	665167..665622	+	151	46906864	-	LMOf2365_0648	-	hypothetical protein
641	 33.59	-1	665678..666070	+	130	46906865	-	LMOf2365_0649	-	hypothetical protein
642	 36.98	0	666167..666907	+	246	46906866	-	LMOf2365_0650	-	hypothetical protein
643	 29.39	-2	666993..667271	+	92	46906867	-	LMOf2365_0651	-	hypothetical protein
644	 33.69	-1	667288..667566	+	92	46906868	-	LMOf2365_0652	-	hypothetical protein
645	 35.14	0	667594..668037	-	147	46906869	-	LMOf2365_0653	-	acetyltransferase
646	 37.89	0	668068..668769	-	233	46906870	-	LMOf2365_0654	-	lipase/acylhydrolase, putative
647	 35.77	0	668854..670533	-	559	46906871	-	LMOf2365_0655	-	hypothetical protein
648	 37.37	0	670836..675596	+	1586	46906872	-	LMOf2365_0656	-	cell wall surface anchor family protein
649	 42.75	+1	675693..675968	+	91	46906873	-	LMOf2365_0657	-	hypothetical protein
650	 35.04	0	676011..676538	+	175	46906874	-	LMOf2365_0658	-	isochorismatase superfamily hydrolase
651	 34.12	-1	676899..678929	+	676	46906875	-	LMOf2365_0659	-	PTS system IIA component domain-containing protein
652	 36.20	0	678931..679383	+	150	46906876	-	LMOf2365_0660	-	PTS system, fructose-specific, IIA component, putative
653	 42.56	+1	679384..680445	+	353	46906877	-	LMOf2365_0661	-	putative fructose-like permease EIIC subunit 2
654	 36.89	0	680460..680768	+	102	46906878	-	LMOf2365_0662	-	putative fructose-like phosphotransferase EIIB subunit 2
655	 37.90	0	680795..682063	+	422	46906879	-	LMOf2365_0663	-	hypothetical protein
656	 34.47	0	682153..682857	+	234	46906880	-	LMOf2365_0664	-	HAD family hydrolase
657	 39.57	0	682962..683378	+	138	46906881	-	LMOf2365_0665	-	Rrf2 family protein
658	 42.42	+1	683391..683984	+	197	46906882	-	LMOf2365_0666	-	UbiE/COQ5 family methlytransferase
659	 31.85	-1	684684..685355	+	223	46906883	-	LMOf2365_0667	-	hypothetical protein
660	 30.65	-2	685385..685570	+	61	46906884	-	LMOf2365_0668	-	hypothetical protein
661	 34.64	0	686111..686644	+	177	46906885	-	LMOf2365_0670	-	transcriptional regulator, putative
662	 39.11	0	686708..687625	+	305	46906886	-	LMOf2365_0671	-	aldo/keto reductase family oxidoreductase
663	 43.06	+1	687891..689771	+	626	46906887	cadA	LMOf2365_0672	-	cadmium-translocating P-type ATPase
664	 37.17	0	689866..690594	+	242	46906888	-	LMOf2365_0673	-	hypothetical protein
665	 39.02	0	690734..691384	+	216	46906889	-	LMOf2365_0674	-	transaldolase, putative
666	 37.40	0	691427..693268	-	613	46906890	-	LMOf2365_0675	-	sulfatase family protein
667	 38.51	0	693482..694873	+	463	46906891	-	LMOf2365_0676	-	amino acid permease family protein
668	 40.83	0	694963..695802	+	279	46906892	-	LMOf2365_0677	-	glyoxalase family protein
669	 34.04	-1	695885..696169	-	94	46906893	-	LMOf2365_0678	-	hypothetical protein
670	 32.70	-1	696267..697217	+	316	46906894	-	LMOf2365_0679	-	magnesium transporter CorA family protein
671	 33.80	-1	697241..697882	+	213	46906895	-	LMOf2365_0680	-	GntR family transcriptional regulator
672	 38.83	0	697925..700615	+	896	46906896	-	LMOf2365_0681	-	phage infection protein
673	 36.11	0	700661..701308	+	215	46906897	-	LMOf2365_0682	-	GntR family transcriptional regulator
674	 39.29	0	701318..701854	-	178	46906898	-	LMOf2365_0683	-	acetyltransferase
675	 41.54	+1	701841..702827	-	328	46906899	-	LMOf2365_0684	-	hypothetical protein
676	 38.68	0	702982..703224	+	80	46906900	-	LMOf2365_0685	-	hypothetical protein
677	 41.24	0	703292..703999	+	235	46906901	-	LMOf2365_0686	-	serine/threonine protein phosphatase family protein
678	 26.23	-2	704427..706565	+	712	46906902	-	LMOf2365_0687	-	hypothetical protein
679	 35.99	0	706695..707258	-	187	46906903	-	LMOf2365_0688	-	hypothetical protein
680	 40.05	0	707378..707794	+	138	46906904	-	LMOf2365_0689	-	hypothetical protein
681	 36.67	0	707837..708466	+	209	46906905	-	LMOf2365_0690	-	endonuclease
682	 32.78	-1	708463..709359	-	298	46906906	-	LMOf2365_0691	-	transcriptional activator, putative
683	 31.56	-1	709593..709874	+	93	46906907	-	LMOf2365_0692	-	IS3 family transposase OrfA
684	 36.85	0	710152..712626	+	824	46906908	-	LMOf2365_0693	-	cell wall surface anchor family protein
685	 33.18	-1	712807..713478	+	223	46906909	-	LMOf2365_0693.1	-	hypothetical protein
686	 38.53	0	713667..715283	+	538	46906910	-	LMOf2365_0694	-	cell wall surface anchor family protein
687	 44.98	+1	715369..715677	-	102	46906911	-	LMOf2365_0695	-	carboxymuconolactone decarboxylase family protein
688	 40.32	0	715740..716555	-	271	46906912	thiD-2	LMOf2365_0696	-	phosphomethylpyrimidine kinase
689	 38.06	0	716581..717447	-	288	46906913	-	LMOf2365_0697	-	Cof-like hydrolase
690	 42.20	+1	717621..718184	+	187	46906914	-	LMOf2365_0698	-	acetyltransferase
691	 42.80	+1	718181..718444	+	87	46906915	-	LMOf2365_0699	-	hypothetical protein
692	 40.74	0	718454..718831	+	125	46906916	-	LMOf2365_0700	-	hypothetical protein
693	 39.85	0	718945..719880	+	311	46906917	-	LMOf2365_0701	-	ABC transporter, ATP-binding protein
694	 40.21	0	719873..720643	+	256	46906918	-	LMOf2365_0702	-	ABC transporter, permease protein
695	 34.85	0	720762..720893	+	43	46906919	-	LMOf2365_0703	-	hypothetical protein
696	 41.84	+1	720906..721787	+	293	46906920	-	LMOf2365_0704	-	short chain dehydrogenase/reductase family oxidoreductase
697	 40.68	0	721805..721981	+	58	46906921	-	LMOf2365_0705	-	hypothetical protein
698	 27.45	-2	723238..723339	+	33	46906922	-	LMOf2365_0707	-	hypothetical protein
699	 37.06	0	723626..724054	+	142	46906923	-	LMOf2365_0708	-	hypothetical protein
700	 34.29	-1	724093..724302	-	69	46906924	-	LMOf2365_0709	-	hypothetical protein
701	 34.09	-1	724321..725241	-	306	46906925	-	LMOf2365_0710	-	hypothetical protein
702	 34.29	-1	725613..725927	+	104	46906926	-	LMOf2365_0711	-	hypothetical protein
703	 37.89	0	725920..726687	+	255	46906927	fliP	LMOf2365_0712	-	flagellar biosynthesis protein FliP
704	 40.66	0	726700..726972	+	90	46906928	fliQ	LMOf2365_0713	-	flagellar biosynthesis protein FliQ
705	 37.14	0	726975..727736	+	253	46906929	fliR	LMOf2365_0714	-	flagellar biosynthesis protein FliR
706	 41.17	0	727752..728798	+	348	46906930	flhB	LMOf2365_0715	-	flagellar biosynthesis protein FlhB
707	 41.52	+1	728845..730920	+	691	46906931	flhA	LMOf2365_0716	-	flagellar biosynthesis protein FlhA
708	 41.99	+1	730942..732165	+	407	46906932	-	LMOf2365_0717	-	flagellar biosynthesis regulator FlhF
709	 43.08	+1	732162..732941	+	259	46906933	flgG	LMOf2365_0718	-	flagellar basal body rod protein FlgG
710	 39.54	0	732970..733758	+	262	46906934	cheR	LMOf2365_0719	-	chemotaxis protein methyltransferase CheR
711	 37.50	0	733783..734118	+	111	46906935	-	LMOf2365_0720	-	hypothetical protein
712	 43.66	+1	734145..734996	+	283	46906936	motA	LMOf2365_0721	-	flagellar motor protein MotA
713	 42.27	+1	734956..735783	+	275	46906937	motB	LMOf2365_0722	-	chemotaxis protein MotB
714	 37.65	0	735784..736293	+	169	46906938	-	LMOf2365_0723	-	hypothetical protein
715	 38.30	0	736316..738229	+	637	46906939	-	LMOf2365_0724	-	glycosyl transferase, group 2 family protein
716	 37.40	0	738242..739150	+	302	46906940	cheV	LMOf2365_0725	-	chemotaxis protein CheV
717	 38.77	0	739388..740251	+	287	46906941	-	LMOf2365_0726	-	flagellin
718	 41.94	+1	740526..740885	+	119	46906942	cheY	LMOf2365_0727	-	chemotaxis protein CheY
719	 40.66	0	740905..742761	+	618	46906943	cheA	LMOf2365_0728	-	chemotaxis protein CheA
720	 44.00	+1	742774..743073	+	99	46906944	-	LMOf2365_0729	-	flagellar motor switch protein
721	 37.96	0	743092..743502	+	136	46906945	-	LMOf2365_0730	-	hypothetical protein
722	 42.88	+1	743518..744564	+	348	46906946	-	LMOf2365_0731	-	hypothetical protein
723	 40.66	0	744566..744988	+	140	46906947	flgD	LMOf2365_0732	-	flagellar basal body rod modification protein
724	 42.72	+1	745008..746243	+	411	46906948	flgE	LMOf2365_0733	-	flagellar hook protein FlgE
725	 37.97	0	746257..746493	+	78	46906949	-	LMOf2365_0734	-	flagellar motor switch protein
726	 41.09	0	746514..747506	+	330	46906950	fliM	LMOf2365_0735	-	flagellar motor switch protein FliM
727	 40.00	0	747542..749056	+	504	46906951	-	LMOf2365_0736	-	flagellar motor switch protein
728	 40.98	0	749080..750465	+	461	46906952	-	LMOf2365_0737	-	hypothetical protein
729	 36.08	0	750488..751654	+	388	46906953	-	LMOf2365_0738	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.