IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
552	 36.02	0	575683..576537	+	284	46906776	-	LMOf2365_0560	-	hypothetical protein
553	 40.31	0	576597..577427	+	276	46906777	-	LMOf2365_0561	-	hypothetical protein
554	 36.67	0	577505..577774	+	89	46906778	-	LMOf2365_0562	-	hypothetical protein
555	 46.09	+2	577793..579148	+	451	46906779	-	LMOf2365_0563	-	hypothetical protein
556	 40.97	0	579188..580156	-	322	46906780	-	LMOf2365_0564	-	LacI family transcription regulator
557	 40.89	0	580328..581650	+	440	46906781	-	LMOf2365_0565	-	glycosy hydrolase family protein
558	 41.75	+1	581754..583025	+	423	46906782	-	LMOf2365_0566	-	allantoate amidohydrolase
559	 46.43	+2	582991..584166	+	391	46906783	-	LMOf2365_0567	-	carboxypeptidase, putative
560	 38.25	0	584214..585230	-	338	46906784	-	LMOf2365_0568	-	tagatose 1,6-diphosphate aldolase
561	 34.67	0	585467..586660	+	397	46906785	-	LMOf2365_0569	-	penicillin-binding protein, putative
562	 38.00	0	586701..587621	-	306	46906786	-	LMOf2365_0570	-	ABC transporter, substrate-binding protein
563	 37.89	0	587732..588082	-	116	46906787	srlB	LMOf2365_0571	-	PTS system, glucitol/sorbitol-specific, IIA component
564	 40.22	0	588101..589087	-	328	46906788	srlE	LMOf2365_0572	-	PTS system, glucitol/sorbitol-specific, IIBC component
565	 39.08	0	589108..589629	-	173	46906789	srlA	LMOf2365_0573	-	PTS system, glucitol/sorbitol-specific, IIC component
566	 34.65	0	589654..590034	-	126	46906790	-	LMOf2365_0574	-	hypothetical protein
567	 40.69	0	590089..591339	-	416	46906791	-	LMOf2365_0575	-	hypothetical protein
568	 37.66	0	591597..592544	-	315	46906792	-	LMOf2365_0576	-	DNA-binding transcriptional regulator, putative
569	 31.38	-1	592912..593577	+	221	46906793	-	LMOf2365_0577	-	hypothetical protein
570	 36.63	0	593595..595628	+	677	46906794	-	LMOf2365_0578	-	leucine-rich repeat-containing protein
571	 40.74	0	595668..595964	+	98	46906795	-	LMOf2365_0579	-	hypothetical protein
572	 43.06	+1	596008..596850	+	280	46906796	-	LMOf2365_0580	-	hypothetical protein
573	 36.34	0	596926..597957	+	343	46906797	-	LMOf2365_0581	-	hypothetical protein
574	 36.16	0	598014..598649	-	211	46906798	-	LMOf2365_0582	-	CBS domain-containing protein
575	 39.32	0	598871..600040	+	389	46906799	-	LMOf2365_0583	-	alcohol dehydrogenase, iron-dependent
576	 40.77	0	600130..601608	+	492	46906800	-	LMOf2365_0584	-	proton-dependent oligopeptide transporter
577	 38.84	0	601737..602444	+	235	46906801	-	LMOf2365_0585	-	phosphoglycerate mutase family protein
578	 36.93	0	602445..603140	+	231	46906802	-	LMOf2365_0586	-	phosphoglycerate mutase family protein
579	 39.58	0	603182..604222	-	346	46906803	-	LMOf2365_0587	-	hypothetical protein
580	 31.24	-1	604622..605527	+	301	46906804	-	LMOf2365_0588	-	magnesium transporter CorA family protein
581	 42.85	+1	605570..606946	-	458	46906805	gdhA	LMOf2365_0589	-	glutamate dehydrogenase
582	 36.54	0	607439..607750	-	103	46906806	hisE	LMOf2365_0590	-	phosphoribosyl-ATP pyrophosphatase
583	 39.31	0	607751..608068	-	105	46906807	hisI	LMOf2365_0591	-	phosphoribosyl-AMP cyclohydrolase
584	 44.97	+1	608065..608820	-	251	46906808	hisF	LMOf2365_0592	-	imidazole glycerol phosphate synthase subunit HisF
585	 42.88	+1	608810..609532	-	240	46906809	hisA	LMOf2365_0593	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
586	 40.83	0	609511..610137	-	208	46906810	hisH	LMOf2365_0594	-	imidazole glycerol phosphate synthase subunit HisH
587	 40.68	0	610138..610722	-	194	46906811	hisB	LMOf2365_0595	-	imidazoleglycerol-phosphate dehydratase
588	 43.54	+1	610723..612006	-	427	46906812	hisD	LMOf2365_0596	-	histidinol dehydrogenase
589	 40.03	0	612003..612644	-	213	46906813	hisG	LMOf2365_0597	-	ATP phosphoribosyltransferase catalytic subunit
590	 38.93	0	612644..613822	-	392	46906814	hisZ	LMOf2365_0598	-	ATP phosphoribosyltransferase regulatory subunit
591	 39.61	0	613974..614801	+	275	46906815	hisK	LMOf2365_0599	-	histidinol-phosphatase
592	 45.12	+2	614786..615082	-	98	46906816	ogt-1	LMOf2365_0600	-	methylated-DNA-protein-cysteine methyltransferase
593	 36.43	0	615159..616190	+	343	46906817	-	LMOf2365_0601	-	hypothetical protein
594	 41.67	+1	616233..617528	-	431	46906818	-	LMOf2365_0602	-	xanthine/uracil permease family protein
595	 38.85	0	617844..619238	+	464	46906819	-	LMOf2365_0603	-	glycosy hydrolase family protein
596	 39.78	0	619282..620010	+	242	46906820	-	LMOf2365_0604	-	GntR family transcriptional regulator
597	 35.66	0	620459..621922	+	487	46906821	-	LMOf2365_0605	-	hypothetical protein
598	 42.05	+1	621977..622435	-	152	46906822	-	LMOf2365_0606	-	hypothetical protein
599	 39.97	0	622449..623201	-	250	46906823	-	LMOf2365_0607	-	hypothetical protein
600	 38.21	0	623330..623575	+	81	46906824	-	LMOf2365_0608	-	hypothetical protein
601	 38.91	0	623591..624253	+	220	46906825	-	LMOf2365_0609	-	phospholipase/carboxylesterase family protein
602	 36.96	0	624284..625468	-	394	46906826	-	LMOf2365_0610	-	hypothetical protein
603	 38.91	0	625556..626989	-	477	46906827	iap	LMOf2365_0611	-	protein P60
604	 39.38	0	627408..629738	+	776	46906828	-	LMOf2365_0612	-	preprotein translocase subunit SecA
605	 34.27	-1	629854..631026	+	390	46906829	-	LMOf2365_0613	-	hypothetical protein
606	 42.58	+1	631284..631997	+	237	46906830	-	LMOf2365_0614	-	hypothetical protein
607	 35.67	0	632065..633090	+	341	46906831	-	LMOf2365_0615	-	hypothetical protein
608	 40.31	0	633108..635573	+	821	46906832	-	LMOf2365_0616	-	hypothetical protein
609	 39.32	0	635685..637088	+	467	46906833	phrB	LMOf2365_0617	-	deoxyribodipyrimidine photolyase
610	 37.68	0	637226..637639	+	137	46906834	-	LMOf2365_0618	-	hypothetical protein
611	 41.36	0	637639..639408	+	589	46906835	-	LMOf2365_0619	-	DAK2 domain-containing protein
612	 36.95	0	639405..640178	+	257	46906836	-	LMOf2365_0620	-	hypothetical protein
613	 35.73	0	640306..640848	+	180	46906837	-	LMOf2365_0621	-	hypothetical protein
614	 37.19	0	641099..641875	+	258	46906838	-	LMOf2365_0622	-	formate/nitrite transporter family protein
615	 43.72	+1	641913..643019	-	368	46906839	metX	LMOf2365_0623	-	homoserine O-acetyltransferase
616	 42.10	+1	643036..644313	-	425	46906840	-	LMOf2365_0624	-	O-acetylhomoserine (thiol)-lyase
617	 36.55	0	644760..645287	+	175	46906841	-	LMOf2365_0625	-	hypothetical protein
618	 35.33	0	645376..646077	-	233	46906842	-	LMOf2365_0626	-	cyclic nucleotide-binding protein
619	 40.80	0	646153..646701	-	182	46906843	-	LMOf2365_0627	-	BioY family protein
620	 30.63	-2	646895..647227	+	110	46906844	-	LMOf2365_0628	-	PadR family transcriptional regulator
621	 38.41	0	647220..647810	+	196	46906845	-	LMOf2365_0629	-	hypothetical protein
622	 35.51	0	647803..648903	+	366	46906846	-	LMOf2365_0630	-	hypothetical protein
623	 38.32	0	649009..649509	+	166	46906847	-	LMOf2365_0631	-	acetyltransferase
624	 38.76	0	649557..649943	-	128	46906848	-	LMOf2365_0632	-	hypothetical protein
625	 35.07	0	649997..650341	-	114	46906849	-	LMOf2365_0633	-	hypothetical protein
626	 40.79	0	650490..651830	-	446	46906850	-	LMOf2365_0634	-	hypothetical protein
627	 37.01	0	651996..652457	+	153	46906851	-	LMOf2365_0635	-	MarR family transcriptional regulator
628	 39.19	0	652465..654189	+	574	46906852	-	LMOf2365_0636	-	ABC transporter, ATP-binding/permease protein
629	 39.49	0	654186..656003	+	605	46906853	-	LMOf2365_0637	-	ABC transporter, ATP-binding/permease protein
630	 37.00	0	656120..656419	+	99	46906854	-	LMOf2365_0638	-	rhodanese-like domain-containing protein
631	 36.95	0	656462..658231	-	589	46906855	-	LMOf2365_0639	-	cell wall anchor domain-containing protein
632	 38.76	0	658392..659018	-	208	46906856	acpD	LMOf2365_0640	-	azoreductase
633	 37.11	0	659187..659636	+	149	46906857	-	LMOf2365_0641	-	MarR family transcriptional regulator
634	 40.02	0	659639..660580	+	313	46906858	-	LMOf2365_0642	-	alcohol dehydrogenase, zinc-dependent
635	 33.71	-1	660675..661208	+	177	46906859	-	LMOf2365_0643	-	acetyltransferase
636	 32.92	-1	661205..661447	-	80	46906860	-	LMOf2365_0644	-	hypothetical protein
637	 34.70	0	661554..663305	+	583	46906861	-	LMOf2365_0645	-	glycerophosphoryl diester phosphodiesterase family protein
638	 33.33	-1	663344..663838	-	164	46906862	-	LMOf2365_0646	-	putative lipoprotein
639	 36.31	0	663918..665060	-	380	46906863	-	LMOf2365_0647	-	protein kinase domain-containing protein
640	 35.31	0	665167..665622	+	151	46906864	-	LMOf2365_0648	-	hypothetical protein
641	 33.59	-1	665678..666070	+	130	46906865	-	LMOf2365_0649	-	hypothetical protein
642	 36.98	0	666167..666907	+	246	46906866	-	LMOf2365_0650	-	hypothetical protein
643	 29.39	-2	666993..667271	+	92	46906867	-	LMOf2365_0651	-	hypothetical protein
644	 33.69	-1	667288..667566	+	92	46906868	-	LMOf2365_0652	-	hypothetical protein
645	 35.14	0	667594..668037	-	147	46906869	-	LMOf2365_0653	-	acetyltransferase
646	 37.89	0	668068..668769	-	233	46906870	-	LMOf2365_0654	-	lipase/acylhydrolase, putative
647	 35.77	0	668854..670533	-	559	46906871	-	LMOf2365_0655	-	hypothetical protein
648	 37.37	0	670836..675596	+	1586	46906872	-	LMOf2365_0656	-	cell wall surface anchor family protein
649	 42.75	+1	675693..675968	+	91	46906873	-	LMOf2365_0657	-	hypothetical protein
650	 35.04	0	676011..676538	+	175	46906874	-	LMOf2365_0658	-	isochorismatase superfamily hydrolase
651	 34.12	-1	676899..678929	+	676	46906875	-	LMOf2365_0659	-	PTS system IIA component domain-containing protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.