IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
442	 42.03	+1	465893..466639	+	248	46906666	-	LMOf2365_0448	-	short chain dehydrogenase/reductase family oxidoreductase
443	 34.04	-1	466835..467260	+	141	46906667	-	LMOf2365_0449	-	hypothetical protein
444	 41.67	+1	467516..474103	+	2195	46906668	-	LMOf2365_0450	-	wall-associated protein, putative
445	 30.23	-2	474103..474585	+	160	46906669	-	LMOf2365_0451	-	hypothetical protein
446	 37.72	0	474856..474969	+	37	46906670	-	LMOf2365_0452	-	hypothetical protein
447	 33.33	-1	475465..475815	+	116	46906671	-	LMOf2365_0453	-	hypothetical protein
448	 30.63	-2	475978..476568	+	196	46906672	-	LMOf2365_0454	-	hypothetical protein
449	 30.20	-2	476595..477041	+	148	46906673	-	LMOf2365_0455	-	hypothetical protein
450	 29.39	-2	477058..477666	+	202	46906674	-	LMOf2365_0456	-	hypothetical protein
451	 28.84	-2	477810..478076	+	88	46906675	-	LMOf2365_0457	-	hypothetical protein
452	 28.85	-2	478116..478472	+	118	46906676	-	LMOf2365_0458	-	hypothetical protein
453	 19.22	-2	478648..478902	+	84	46906677	-	LMOf2365_0459	-	hypothetical protein
454	 22.02	-2	478915..479082	+	55	46906678	-	LMOf2365_0460	-	hypothetical protein
455	 27.88	-2	479199..479693	+	164	46906679	-	LMOf2365_0461	-	hypothetical protein
456	 32.96	-1	479903..480169	+	88	46906680	-	LMOf2365_0462	-	hypothetical protein
457	 30.54	-2	480288..481076	+	262	46906681	-	LMOf2365_0463	-	hypothetical protein
458	 29.43	-2	481229..481894	+	221	46906682	-	LMOf2365_0464	-	hypothetical protein
459	 27.08	-2	482137..482376	-	79	46906683	-	LMOf2365_0465	-	hypothetical protein
460	 34.86	0	482394..482981	+	195	46906684	-	LMOf2365_0466	-	hypothetical protein
461	 31.29	-1	483006..483152	+	48	46906685	-	LMOf2365_0467	-	hypothetical protein
462	 35.59	0	483130..483705	+	191	46906686	-	LMOf2365_0468	-	HEAT repeat-containing PBS lyase
463	 26.98	-2	483744..483869	+	41	46906687	-	LMOf2365_0469	-	hypothetical protein
464	 37.25	0	483988..484089	+	33	46906688	-	LMOf2365_0470	-	hypothetical protein
465	 37.04	0	484412..486814	+	800	46906689	inlA	LMOf2365_0471	-	internalin A
466	 32.26	-1	488906..489373	-	155	46906690	-	LMOf2365_0473	-	hypothetical protein
467	 40.66	0	489490..490335	+	281	46906691	-	LMOf2365_0474	-	YtfG protein, putative
468	 32.82	-1	490530..491108	+	192	46906692	-	LMOf2365_0475	-	hypothetical protein
469	 38.22	0	491141..492409	-	422	46906693	-	LMOf2365_0476	-	hypothetical protein
470	 32.74	-1	492547..493050	+	167	46906694	-	LMOf2365_0477	-	hypothetical protein
471	 41.09	0	493092..495128	-	678	46906695	-	LMOf2365_0478	-	penicillin-binding protein
472	 43.49	+1	495300..495614	+	104	46906696	-	LMOf2365_0479	-	hypothetical protein
473	 38.39	0	495751..496680	+	309	46906697	-	LMOf2365_0480	-	transcriptional regulator, putative
474	 35.70	0	496728..497276	-	182	46906698	-	LMOf2365_0481	-	hypothetical protein
475	 38.15	0	497510..498235	+	241	46906699	-	LMOf2365_0482	-	hypothetical protein
476	 38.14	0	498279..498944	-	221	46906700	-	LMOf2365_0483	-	hypothetical protein
477	 34.39	0	498965..499720	-	251	46906701	-	LMOf2365_0484	-	hypothetical protein
478	 39.12	0	499837..501996	-	719	46906702	-	LMOf2365_0485	-	peptidase, putative
479	 39.69	0	501993..503141	-	382	46906703	-	LMOf2365_0486	-	hypothetical protein
480	 40.40	0	503146..504093	-	315	46906704	-	LMOf2365_0487	-	magnesium chelatase, subunit ChII family protein
481	 37.18	0	504261..505844	+	527	46906705	-	LMOf2365_0488	-	hypothetical protein
482	 39.56	0	505978..507261	+	427	46906706	-	LMOf2365_0489	-	cytosine/purines/uracil/thiamine/allantoin permease family protein
483	 43.32	+1	507262..508362	+	366	46906707	-	LMOf2365_0490	-	hypothetical protein
484	 44.42	+1	508355..509905	+	516	46906708	-	LMOf2365_0491	-	hydantoinase/oxoprolinase family protein
485	 33.77	-1	510079..510306	-	75	46906709	-	LMOf2365_0492	-	hypothetical protein
486	 32.55	-1	510541..512079	+	512	46906710	-	LMOf2365_0493	-	hypothetical protein
487	 37.26	0	512381..514495	+	704	46906711	-	LMOf2365_0494	-	hypothetical protein
488	 38.02	0	514631..516700	+	689	46906712	-	LMOf2365_0495	-	putative lipoprotein
489	 33.54	-1	516766..517239	+	157	46906713	-	LMOf2365_0496	-	hypothetical protein
490	 37.65	0	517259..517744	+	161	46906714	-	LMOf2365_0497	-	hypothetical protein
491	 38.30	0	517796..518077	+	93	46906715	-	LMOf2365_0498	-	cell wall surface anchor family protein
492	 33.71	-1	518151..518417	+	88	46906716	-	LMOf2365_0499	-	IS3 family transposase OrfA
493	 26.55	-2	518926..519102	+	58	46906717	-	LMOf2365_0500	-	hypothetical protein
494	 35.76	0	519153..519770	+	205	46906718	-	LMOf2365_0501	-	hypothetical protein
495	 28.70	-2	520080..520424	+	114	46906719	-	LMOf2365_0502	-	hypothetical protein
496	 29.22	-2	520831..521073	+	80	46906720	-	LMOf2365_0503	-	hypothetical protein
497	 41.72	+1	521156..522133	-	325	46906721	-	LMOf2365_0504	-	HD domain-containing protein
498	 46.13	+2	522237..522572	+	111	46906722	-	LMOf2365_0505	-	hypothetical protein
499	 32.22	-1	523033..523392	+	119	46906723	-	LMOf2365_0506	-	hypothetical protein
500	 39.04	0	523644..524204	+	186	46906724	-	LMOf2365_0507	-	hypothetical protein
501	 39.62	0	524314..526014	+	566	46906725	-	LMOf2365_0508	-	antigen, putative
502	 40.94	0	526165..527268	+	367	46906726	-	LMOf2365_0509	-	hypothetical protein
503	 42.08	+1	527358..527837	+	159	46906727	-	LMOf2365_0510	-	hypothetical protein
504	 42.90	+1	527995..528360	+	121	46906728	-	LMOf2365_0511	-	heme-degrading monooxygenase IsdG
505	 38.94	0	528853..530154	+	433	46906729	-	LMOf2365_0513	-	hypothetical protein
506	 29.10	-2	530167..530544	+	125	46906730	-	LMOf2365_0514	-	hypothetical protein
507	 41.15	0	530778..531353	+	191	46906731	-	LMOf2365_0515	-	hypothetical protein
508	 46.78	+2	531418..531588	+	56	46906732	rpmF	LMOf2365_0516	-	50S ribosomal protein L32
509	 41.29	0	531680..532408	+	242	46906733	-	LMOf2365_0517	-	MutT/nudix family protein
510	 38.03	0	532445..533338	-	297	46906734	-	LMOf2365_0518	-	LysR family transcriptional regulator
511	 41.85	+1	533536..535530	+	664	46906735	-	LMOf2365_0519	-	NADH:flavin oxidoreductase
512	 38.93	0	535630..536505	+	291	46906736	aroE	LMOf2365_0520	-	shikimate 5-dehydrogenase
513	 41.11	0	536571..537329	+	252	46906737	aroD	LMOf2365_0521	-	3-dehydroquinate dehydratase
514	 32.23	-1	537398..538306	-	302	46906738	-	LMOf2365_0522	-	LysR family transcriptional regulator
515	 38.44	0	538381..540141	-	586	46906739	-	LMOf2365_0523	-	CocE/NonD family hydrolase
516	 43.77	+1	540333..540926	+	197	46906740	-	LMOf2365_0524	-	lipase/acylhydrolase family protein
517	 40.31	0	541112..542071	+	319	46906741	-	LMOf2365_0525	-	hypothetical protein
518	 32.44	-1	542146..542370	+	74	46906742	-	LMOf2365_0526	-	hypothetical protein
519	 43.11	+1	542537..542986	+	149	46906743	rpiB-2	LMOf2365_0527	-	ribose 5-phosphate isomerase B
520	 40.66	0	542983..543651	+	222	46906744	-	LMOf2365_0528	-	ribulose-phosphate 3-epimerase family protein
521	 37.17	0	543658..544308	+	216	46906745	-	LMOf2365_0529	-	transaldolase, putative
522	 36.05	0	544417..546477	+	686	46906746	-	LMOf2365_0530	-	PTS system IIA component domain-containing protein
523	 38.81	0	546481..547083	+	200	46906747	-	LMOf2365_0531	-	SIS domain-containing protein
524	 40.17	0	547111..547578	+	155	46906748	-	LMOf2365_0532	-	PTS system, IIA component
525	 35.84	0	547595..547993	+	132	46906749	-	LMOf2365_0533	-	hypothetical protein
526	 38.56	0	548004..548654	+	216	46906750	rpe-1	LMOf2365_0534	-	ribulose-phosphate 3-epimerase
527	 40.88	0	548651..549697	+	348	46906751	-	LMOf2365_0535	-	alcohol dehydrogenase, zinc-dependent
528	 36.05	0	549713..550006	+	97	46906752	-	LMOf2365_0536	-	PTS system, galactitol-specific, IIB component, putative
529	 40.17	0	550021..551292	+	423	46906753	-	LMOf2365_0537	-	PTS system, galactitol-specific, IIC component, putative
530	 42.84	+1	551432..552367	+	311	46906754	prs-2	LMOf2365_0538	-	ribose-phosphate pyrophosphokinase
531	 31.43	-1	552989..553567	+	192	46906755	-	LMOf2365_0539	-	putative lipoprotein
532	 38.47	0	553674..554354	+	226	46906756	-	LMOf2365_0540	-	glutamine amidotransferase, class I
533	 39.44	0	554379..554738	-	119	46906757	-	LMOf2365_0541	-	hypothetical protein
534	 40.31	0	554745..555203	-	152	46906758	-	LMOf2365_0542	-	MarR family transcriptional regulator
535	 36.94	0	555585..557414	+	609	46906759	-	LMOf2365_0543	-	cell wall surface anchor family protein
536	 38.66	0	557515..557946	+	143	46906760	-	LMOf2365_0544	-	universal stress protein
537	 38.02	0	557993..559423	-	476	46906761	-	LMOf2365_0545	-	CapA domain-containing protein
538	 38.36	0	559544..560359	-	271	46906762	-	LMOf2365_0546	-	phosphoglycerate mutase family protein
539	 44.44	+1	560640..561008	-	122	46906763	-	LMOf2365_0547	-	hypothetical protein
540	 41.38	0	561155..562570	+	471	46906764	-	LMOf2365_0548	-	EmrB/QacA family drug resistance transporter
541	 42.39	+1	562702..563706	+	334	46906765	-	LMOf2365_0549	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.