IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
355	 32.59	-1	385524..385793	+	89	46906579	-	LMOf2365_0359	-	hypothetical protein
356	 36.59	0	385787..385909	+	40	46906580	-	LMOf2365_0360	-	hypothetical protein
357	 38.10	0	386169..386357	+	62	46906581	-	LMOf2365_0361	-	hypothetical protein
358	 47.00	+2	386477..388474	-	665	46906582	tkt-1	LMOf2365_0362	-	transketolase
359	 40.64	0	388476..389132	-	218	46906583	-	LMOf2365_0363	-	putative translaldolase
360	 40.92	0	389179..389943	-	254	46906584	-	LMOf2365_0364	-	short chain dehydrogenase
361	 40.04	0	389968..390414	-	148	46906585	rpiB-1	LMOf2365_0365	-	ribose 5-phosphate isomerase B
362	 42.09	+1	390421..391185	-	254	46906586	tpiA-1	LMOf2365_0366	-	triosephosphate isomerase
363	 45.16	+2	391189..391839	-	216	46906587	-	LMOf2365_0367	-	dihydroxyacetone kinase
364	 42.17	+1	391861..392856	-	331	46906588	-	LMOf2365_0368	-	dihydroxyacetone kinase
365	 41.52	+1	392878..393219	-	113	46906589	-	LMOf2365_0369	-	hypothetical protein
366	 38.66	0	393235..393666	-	143	46906590	-	LMOf2365_0370	-	hypothetical protein
367	 39.68	0	393751..394128	-	125	46906591	-	LMOf2365_0371	-	hypothetical protein
368	 35.95	0	394311..395075	+	254	46906592	-	LMOf2365_0372	-	DeoR family transcriptional regulator
369	 38.20	0	395141..395551	+	136	46906593	-	LMOf2365_0373	-	acetyltransferase
370	 37.34	0	395649..397418	+	589	46906594	-	LMOf2365_0374	-	internalin
371	 39.69	0	397459..398985	-	508	46906595	-	LMOf2365_0375	-	long-chain acyl-CoA synthetase, putative
372	 39.25	0	399222..400742	+	506	46906596	-	LMOf2365_0376	-	fumarate reductase flavoprotein subunit
373	 38.35	0	400946..401962	+	338	46906597	-	LMOf2365_0377	-	YhhX family oxidoreductase
374	 39.14	0	404018..404878	+	286	46906598	-	LMOf2365_0379	-	hypothetical protein
375	 38.39	0	404935..405705	+	256	46906599	-	LMOf2365_0380	-	DeoR family transcriptional regulator
376	 23.68	-2	405689..405916	-	75	46906600	-	LMOf2365_0381	-	hypothetical protein
377	 33.01	-1	406017..406634	-	205	46906601	-	LMOf2365_0382	-	S51 family peptidase
378	 33.86	-1	406729..407676	+	315	46906602	-	LMOf2365_0383	-	hypothetical protein
379	 39.41	0	407726..408235	+	169	46906603	-	LMOf2365_0384	-	MutT/nudix family protein
380	 38.06	0	408331..409050	+	239	46906604	-	LMOf2365_0385	-	hypothetical protein
381	 41.67	+1	409087..409422	+	111	46906605	phnA	LMOf2365_0386	-	alkylphosphonate utilization operon protein PhnA
382	 39.08	0	409462..410175	-	237	46906606	-	LMOf2365_0387	-	GntR family transcriptional regulator
383	 38.60	0	410332..411774	+	480	46906607	-	LMOf2365_0388	-	glycosy hydrolase family protein
384	 38.73	0	411767..413101	+	444	46906608	-	LMOf2365_0389	-	PTS system, beta-glucoside-specific, IIC component
385	 40.26	0	413119..413421	+	100	46906609	-	LMOf2365_0390	-	PTS system, beta-glucoside-specific, IIB component
386	 31.28	-1	413508..413702	+	64	46906610	-	LMOf2365_0391	-	hypothetical protein
387	 41.04	0	413741..414661	-	306	46906611	-	LMOf2365_0392	-	hypothetical protein
388	 40.71	0	414764..415183	+	139	46906612	-	LMOf2365_0393	-	hypothetical protein
389	 40.68	0	415232..415993	-	253	46906613	-	LMOf2365_0394	-	DeoR family transcriptional regulator
390	 44.04	+1	416188..417654	+	488	46906614	mmsA	LMOf2365_0395	-	methylmalonate-semialdehyde dehydrogenase
391	 42.82	+1	417667..418488	+	273	46906615	-	LMOf2365_0396	-	IolB protein, putative
392	 41.92	+1	418505..419482	+	325	46906616	-	LMOf2365_0397	-	IolC protein, putative
393	 45.99	+2	419492..421411	+	639	46906617	-	LMOf2365_0398	-	thiamine-pyrophosphate-requiring enzyme
394	 38.71	0	421544..421915	+	123	46906618	-	LMOf2365_0399	-	hypothetical protein
395	 37.13	0	422009..422377	+	122	46906619	-	LMOf2365_0400	-	hypothetical protein
396	 37.63	0	422401..423516	-	371	46906620	-	LMOf2365_0401	-	hypothetical protein
397	 40.84	0	423647..424312	+	221	46906621	ung-1	LMOf2365_0402	-	uracil-DNA glycosylase
398	 40.33	0	424480..424779	+	99	46906622	-	LMOf2365_0403	-	hypothetical protein
399	 42.12	+1	424776..425720	+	314	46906623	-	LMOf2365_0404	-	hypothetical protein
400	 38.22	0	425755..426204	+	149	46906624	-	LMOf2365_0405	-	hypothetical protein
401	 35.56	0	426315..427031	+	238	46906625	-	LMOf2365_0406	-	NLP/P60 family protein
402	 36.15	0	427087..427512	+	141	46906626	-	LMOf2365_0407	-	acetyltransferase
403	 41.07	0	427515..428315	-	266	46906627	proC	LMOf2365_0408	-	pyrroline-5-carboxylate reductase
404	 30.05	-2	428664..428876	+	70	46906628	-	LMOf2365_0409	-	hypothetical protein
405	 31.37	-1	428922..429023	+	33	46906629	-	LMOf2365_0410	-	hypothetical protein
406	 30.39	-2	429060..429161	+	33	46906630	-	LMOf2365_0411	-	hypothetical protein
407	 34.31	0	429199..429300	+	33	46906631	-	LMOf2365_0412	-	hypothetical protein
408	 35.87	0	429391..430614	+	407	46906632	-	LMOf2365_0413	-	cell wall surface anchor family protein
409	 30.88	-1	430731..431381	+	216	46906633	-	LMOf2365_0414	-	GntR family transcriptional regulator
410	 32.00	-1	431426..432025	+	199	46906634	-	LMOf2365_0415	-	hypothetical protein
411	 35.70	0	432043..432717	+	224	46906635	-	LMOf2365_0416	-	ABC transporter, ATP-binding protein
412	 35.45	0	432702..433880	+	392	46906636	-	LMOf2365_0417	-	ABC transporter, permease protein, putative
413	 34.72	0	433899..434042	+	47	46906637	-	LMOf2365_0418	-	hypothetical protein
414	 37.89	0	434113..434595	+	160	46906638	-	LMOf2365_0419	-	hypothetical protein
415	 40.09	0	436683..439316	+	877	46906639	-	LMOf2365_0421	-	alpha-mannosidase
416	 37.73	0	439349..441283	+	644	46906640	-	LMOf2365_0422	-	PRD/PTS system IIA 2 domain-containing protein
417	 32.37	-1	441410..441826	+	138	46906641	-	LMOf2365_0423	-	hypothetical protein
418	 31.55	-1	441823..442215	+	130	46906642	-	LMOf2365_0424	-	hypothetical protein
419	 40.97	0	442324..443331	+	335	46906643	-	LMOf2365_0425	-	phosphate transporter family protein
420	 39.37	0	443347..443727	+	126	46906644	-	LMOf2365_0426	-	glyoxalase family protein
421	 32.32	-1	443796..444188	+	130	46906645	-	LMOf2365_0427	-	hypothetical protein
422	 39.24	0	444201..444623	+	140	46906646	-	LMOf2365_0428	-	hypothetical protein
423	 35.52	0	444851..447322	+	823	46906647	inlF	LMOf2365_0429	-	internalin
424	 41.94	+1	447370..449973	-	867	46906648	-	LMOf2365_0430	-	phosphoenolpyruvate synthase
425	 41.52	+1	450173..451051	-	292	46906649	-	LMOf2365_0431	-	hypothetical protein
426	 41.67	+1	451388..451579	+	63	46906650	-	LMOf2365_0432	-	hypothetical protein
427	 42.47	+1	451606..452415	+	269	46906651	-	LMOf2365_0433	-	ZIP zinc transporter family protein
428	 36.26	0	452708..454108	+	466	46906652	-	LMOf2365_0434	-	polysaccharide deacetylase family protein
429	 34.31	0	454235..454438	+	67	46906653	-	LMOf2365_0435	-	DNA-binding protein
430	 30.17	-2	454440..454850	+	136	46906654	-	LMOf2365_0436	-	hypothetical protein
431	 36.33	0	454903..455202	-	99	46906655	-	LMOf2365_0437	-	hypothetical protein
432	 34.05	-1	455283..455837	-	184	46906656	-	LMOf2365_0438	-	hypothetical protein
433	 39.85	0	455984..456796	+	270	46906657	-	LMOf2365_0439	-	Cof-like hydrolase
434	 41.26	0	456815..457672	-	285	46906658	-	LMOf2365_0440	-	sugar transporter, putative
435	 38.48	0	457835..459796	+	653	46906659	-	LMOf2365_0441	-	PRD/PTS system IIA 2 domain-containing protein
436	 36.77	0	459796..460260	+	154	46906660	-	LMOf2365_0442	-	PTS system, fructose-specific, IIA component
437	 39.56	0	460257..460577	+	106	46906661	-	LMOf2365_0443	-	PTS system, fructose-specific, IIB component
438	 43.18	+1	460590..461696	+	368	46906662	-	LMOf2365_0444	-	PTS system, fructose-specific, IIC component
439	 41.35	0	461712..464294	+	860	46906663	-	LMOf2365_0445	-	glycosy hydrolase family protein
440	 35.16	0	464317..465192	-	291	46906664	-	LMOf2365_0446	-	LysR family transcriptional regulator
441	 39.47	0	465310..465879	+	189	46906665	-	LMOf2365_0447	-	acetyltransferase
442	 42.03	+1	465893..466639	+	248	46906666	-	LMOf2365_0448	-	short chain dehydrogenase/reductase family oxidoreductase
443	 34.04	-1	466835..467260	+	141	46906667	-	LMOf2365_0449	-	hypothetical protein
444	 41.67	+1	467516..474103	+	2195	46906668	-	LMOf2365_0450	-	wall-associated protein, putative
445	 30.23	-2	474103..474585	+	160	46906669	-	LMOf2365_0451	-	hypothetical protein
446	 37.72	0	474856..474969	+	37	46906670	-	LMOf2365_0452	-	hypothetical protein
447	 33.33	-1	475465..475815	+	116	46906671	-	LMOf2365_0453	-	hypothetical protein
448	 30.63	-2	475978..476568	+	196	46906672	-	LMOf2365_0454	-	hypothetical protein
449	 30.20	-2	476595..477041	+	148	46906673	-	LMOf2365_0455	-	hypothetical protein
450	 29.39	-2	477058..477666	+	202	46906674	-	LMOf2365_0456	-	hypothetical protein
451	 28.84	-2	477810..478076	+	88	46906675	-	LMOf2365_0457	-	hypothetical protein
452	 28.85	-2	478116..478472	+	118	46906676	-	LMOf2365_0458	-	hypothetical protein
453	 19.22	-2	478648..478902	+	84	46906677	-	LMOf2365_0459	-	hypothetical protein
454	 22.02	-2	478915..479082	+	55	46906678	-	LMOf2365_0460	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.