IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
307	 36.90	0	331387..332226	+	279	46906531	-	LMOf2365_0310	-	hypothetical protein
308	 38.27	0	332347..333177	+	276	46906532	-	LMOf2365_0311	-	metallo-beta-lactamase family protein
309	 39.79	0	333275..334777	+	500	46906533	-	LMOf2365_0312	-	serine protease
310	 38.54	0	335107..335202	+	31	46906534	-	LMOf2365_0313	-	hypothetical protein
311	 46.04	+2	335465..335944	+	159	46906535	-	LMOf2365_0314	-	SPOUT methyltransferase superfamily protein
312	 33.33	-1	335976..336839	-	287	46906536	-	LMOf2365_0315	-	LysR family transcriptional regulator
313	 32.79	-1	336958..337695	+	245	46906537	-	LMOf2365_0316	-	nitroreductase family protein
314	 41.94	+1	337906..338544	+	212	46906538	-	LMOf2365_0317	-	hypothetical protein
315	 38.25	0	338549..340420	-	623	46906539	-	LMOf2365_0318	-	PRD/PTS system IIA 2 domain-containing protein
316	 42.54	+1	340519..341832	-	437	46906540	-	LMOf2365_0319	-	PTS system, IIC component
317	 43.30	+1	341837..342127	-	96	46906541	-	LMOf2365_0320	-	PTS system, cellobiose-specific, IIB component
318	 43.53	+1	342144..343535	-	463	46906542	-	LMOf2365_0321	-	glycosy hydrolase family protein
319	 42.69	+1	343528..343869	-	113	46906543	-	LMOf2365_0322	-	PTS system, beta-glucoside-specific, IIA component
320	 26.44	-2	343921..344007	+	28	46906544	-	LMOf2365_0323	-	hypothetical protein
321	 30.40	-2	344509..346176	-	555	46906545	-	LMOf2365_0325	-	type II restriction enzyme Sau3AI, putative
322	 32.85	-1	346304..346510	+	68	46906546	-	LMOf2365_0326	-	DNA-binding protein
323	 32.98	-1	346513..347922	+	469	46906547	-	LMOf2365_0327	-	C-5 cytosine-specific DNA methylase family protein
324	 27.84	-2	348172..349026	+	284	46906548	-	LMOf2365_0328	-	hypothetical protein
325	 30.81	-1	349247..349801	+	184	46906549	-	LMOf2365_0329	-	putative lipoprotein
326	 43.52	+1	349992..351071	+	359	46906550	-	LMOf2365_0330	-	threonine aldolase family protein
327	 32.03	-1	351321..352241	+	306	46906551	-	LMOf2365_0331	-	M48 family peptidase
328	 46.06	+2	352266..353051	+	261	46906552	-	LMOf2365_0332	-	hypothetical protein
329	 46.52	+2	353274..353948	+	224	46906553	-	LMOf2365_0333	-	TENA/THI-4 family protein
330	 48.50	+2	353953..354750	+	265	46906554	thiM	LMOf2365_0334	-	hydroxyethylthiazole kinase
331	 45.27	+2	354747..355550	+	267	46906555	thiD-1	LMOf2365_0335	-	phosphomethylpyrimidine kinase
332	 46.51	+2	355547..356191	+	214	46906556	thiE	LMOf2365_0336	-	thiamine-phosphate pyrophosphorylase
333	 42.16	+1	356218..357633	-	471	46906557	bglH-1	LMOf2365_0337	-	beta-glucosidase
334	 39.95	0	357848..359116	-	422	46906558	-	LMOf2365_0338	-	cell wall surface anchor family protein
335	 40.15	0	359444..360103	+	219	46906559	-	LMOf2365_0339	-	hypothetical protein
336	 32.82	-1	360401..360793	+	130	46906560	-	LMOf2365_0340	-	hypothetical protein
337	 38.89	0	360828..361601	-	257	46906561	-	LMOf2365_0341	-	endonuclease/exonuclease/phosphatase family protein
338	 38.25	0	361756..362223	+	155	46906562	-	LMOf2365_0342	-	putative lipoprotein
339	 33.55	-1	362491..363393	+	300	46906563	-	LMOf2365_0343	-	transcriptional activator, putative
340	 37.92	0	363557..364429	+	290	46906564	-	LMOf2365_0344	-	transcriptional activator, putative
341	 37.98	0	364736..368677	+	1313	46906565	-	LMOf2365_0345	-	hypothetical protein
342	 31.55	-1	368767..369495	+	242	46906566	-	LMOf2365_0346	-	hypothetical protein
343	 34.46	0	369650..371506	-	618	46906567	-	LMOf2365_0347	-	cell wall surface anchor family protein
344	 35.95	0	372017..372169	+	50	46906568	-	LMOf2365_0348	-	hypothetical protein
345	 37.79	0	372153..375296	+	1047	46906569	-	LMOf2365_0349	-	cell wall surface anchor family protein
346	 36.02	0	375686..381013	+	1775	46906570	-	LMOf2365_0350	-	cell wall surface anchor family protein
347	 31.24	-1	381237..381761	+	174	46906571	-	LMOf2365_0351	-	hypothetical protein
348	 42.11	+1	381974..382258	+	94	46906572	-	LMOf2365_0352	-	hypothetical protein
349	 41.73	+1	382259..382627	+	122	46906573	-	LMOf2365_0353	-	hypothetical protein
350	 39.60	0	382624..384060	+	478	46906574	-	LMOf2365_0354	-	hypothetical protein
351	 28.03	-2	384072..384467	+	131	46906575	-	LMOf2365_0355	-	hypothetical protein
352	 29.17	-2	384604..384723	+	39	46906576	-	LMOf2365_0356	-	hypothetical protein
353	 35.06	0	384828..385058	+	76	46906577	-	LMOf2365_0357	-	hypothetical protein
354	 29.82	-2	385137..385364	+	75	46906578	-	LMOf2365_0358	-	hypothetical protein
355	 32.59	-1	385524..385793	+	89	46906579	-	LMOf2365_0359	-	hypothetical protein
356	 36.59	0	385787..385909	+	40	46906580	-	LMOf2365_0360	-	hypothetical protein
357	 38.10	0	386169..386357	+	62	46906581	-	LMOf2365_0361	-	hypothetical protein
358	 47.00	+2	386477..388474	-	665	46906582	tkt-1	LMOf2365_0362	-	transketolase
359	 40.64	0	388476..389132	-	218	46906583	-	LMOf2365_0363	-	putative translaldolase
360	 40.92	0	389179..389943	-	254	46906584	-	LMOf2365_0364	-	short chain dehydrogenase
361	 40.04	0	389968..390414	-	148	46906585	rpiB-1	LMOf2365_0365	-	ribose 5-phosphate isomerase B
362	 42.09	+1	390421..391185	-	254	46906586	tpiA-1	LMOf2365_0366	-	triosephosphate isomerase
363	 45.16	+2	391189..391839	-	216	46906587	-	LMOf2365_0367	-	dihydroxyacetone kinase
364	 42.17	+1	391861..392856	-	331	46906588	-	LMOf2365_0368	-	dihydroxyacetone kinase
365	 41.52	+1	392878..393219	-	113	46906589	-	LMOf2365_0369	-	hypothetical protein
366	 38.66	0	393235..393666	-	143	46906590	-	LMOf2365_0370	-	hypothetical protein
367	 39.68	0	393751..394128	-	125	46906591	-	LMOf2365_0371	-	hypothetical protein
368	 35.95	0	394311..395075	+	254	46906592	-	LMOf2365_0372	-	DeoR family transcriptional regulator
369	 38.20	0	395141..395551	+	136	46906593	-	LMOf2365_0373	-	acetyltransferase
370	 37.34	0	395649..397418	+	589	46906594	-	LMOf2365_0374	-	internalin
371	 39.69	0	397459..398985	-	508	46906595	-	LMOf2365_0375	-	long-chain acyl-CoA synthetase, putative
372	 39.25	0	399222..400742	+	506	46906596	-	LMOf2365_0376	-	fumarate reductase flavoprotein subunit
373	 38.35	0	400946..401962	+	338	46906597	-	LMOf2365_0377	-	YhhX family oxidoreductase
374	 39.14	0	404018..404878	+	286	46906598	-	LMOf2365_0379	-	hypothetical protein
375	 38.39	0	404935..405705	+	256	46906599	-	LMOf2365_0380	-	DeoR family transcriptional regulator
376	 23.68	-2	405689..405916	-	75	46906600	-	LMOf2365_0381	-	hypothetical protein
377	 33.01	-1	406017..406634	-	205	46906601	-	LMOf2365_0382	-	S51 family peptidase
378	 33.86	-1	406729..407676	+	315	46906602	-	LMOf2365_0383	-	hypothetical protein
379	 39.41	0	407726..408235	+	169	46906603	-	LMOf2365_0384	-	MutT/nudix family protein
380	 38.06	0	408331..409050	+	239	46906604	-	LMOf2365_0385	-	hypothetical protein
381	 41.67	+1	409087..409422	+	111	46906605	phnA	LMOf2365_0386	-	alkylphosphonate utilization operon protein PhnA
382	 39.08	0	409462..410175	-	237	46906606	-	LMOf2365_0387	-	GntR family transcriptional regulator
383	 38.60	0	410332..411774	+	480	46906607	-	LMOf2365_0388	-	glycosy hydrolase family protein
384	 38.73	0	411767..413101	+	444	46906608	-	LMOf2365_0389	-	PTS system, beta-glucoside-specific, IIC component
385	 40.26	0	413119..413421	+	100	46906609	-	LMOf2365_0390	-	PTS system, beta-glucoside-specific, IIB component
386	 31.28	-1	413508..413702	+	64	46906610	-	LMOf2365_0391	-	hypothetical protein
387	 41.04	0	413741..414661	-	306	46906611	-	LMOf2365_0392	-	hypothetical protein
388	 40.71	0	414764..415183	+	139	46906612	-	LMOf2365_0393	-	hypothetical protein
389	 40.68	0	415232..415993	-	253	46906613	-	LMOf2365_0394	-	DeoR family transcriptional regulator
390	 44.04	+1	416188..417654	+	488	46906614	mmsA	LMOf2365_0395	-	methylmalonate-semialdehyde dehydrogenase
391	 42.82	+1	417667..418488	+	273	46906615	-	LMOf2365_0396	-	IolB protein, putative
392	 41.92	+1	418505..419482	+	325	46906616	-	LMOf2365_0397	-	IolC protein, putative
393	 45.99	+2	419492..421411	+	639	46906617	-	LMOf2365_0398	-	thiamine-pyrophosphate-requiring enzyme
394	 38.71	0	421544..421915	+	123	46906618	-	LMOf2365_0399	-	hypothetical protein
395	 37.13	0	422009..422377	+	122	46906619	-	LMOf2365_0400	-	hypothetical protein
396	 37.63	0	422401..423516	-	371	46906620	-	LMOf2365_0401	-	hypothetical protein
397	 40.84	0	423647..424312	+	221	46906621	ung-1	LMOf2365_0402	-	uracil-DNA glycosylase
398	 40.33	0	424480..424779	+	99	46906622	-	LMOf2365_0403	-	hypothetical protein
399	 42.12	+1	424776..425720	+	314	46906623	-	LMOf2365_0404	-	hypothetical protein
400	 38.22	0	425755..426204	+	149	46906624	-	LMOf2365_0405	-	hypothetical protein
401	 35.56	0	426315..427031	+	238	46906625	-	LMOf2365_0406	-	NLP/P60 family protein
402	 36.15	0	427087..427512	+	141	46906626	-	LMOf2365_0407	-	acetyltransferase
403	 41.07	0	427515..428315	-	266	46906627	proC	LMOf2365_0408	-	pyrroline-5-carboxylate reductase
404	 30.05	-2	428664..428876	+	70	46906628	-	LMOf2365_0409	-	hypothetical protein
405	 31.37	-1	428922..429023	+	33	46906629	-	LMOf2365_0410	-	hypothetical protein
406	 30.39	-2	429060..429161	+	33	46906630	-	LMOf2365_0411	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.