IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2722	 32.26	-1	2800064..2800156	+	30	46908946	-	LMOf2365_2747	-	hypothetical protein
2723	 41.24	0	2800167..2800697	-	176	46908947	-	LMOf2365_2748	-	hypothetical protein
2724	 40.41	0	2800755..2802365	-	536	46908948	-	LMOf2365_2749	-	ABC transporter, ATP-binding protein
2725	 35.56	0	2802721..2802855	+	44	46908949	-	LMOf2365_2750	-	hypothetical protein
2726	 42.41	+1	2802883..2804337	+	484	46908950	-	LMOf2365_2751	-	glycosy hydrolase family protein
2727	 41.25	0	2804381..2804683	+	100	46908951	-	LMOf2365_2752	-	PTS system, cellobiose-specific, IIB component
2728	 41.02	0	2804716..2806068	+	450	46908952	-	LMOf2365_2753	-	PTS system, cellobiose-specific, IIC component, putative
2729	 43.50	+1	2806080..2806964	+	294	46908953	-	LMOf2365_2754	-	ROK family protein
2730	 40.13	0	2806957..2807265	+	102	46908954	-	LMOf2365_2755	-	PTS system, IIA component
2731	 40.41	0	2807305..2808039	-	244	46908955	-	LMOf2365_2756	-	RpiR family phosphosugar-binding transcriptional regulator
2732	 37.71	0	2808140..2808802	-	220	46908956	-	LMOf2365_2757	-	hypothetical protein
2733	 35.90	0	2808873..2810003	-	376	46908957	-	LMOf2365_2758	-	hypothetical protein
2734	 36.71	0	2810030..2810917	-	295	46908958	-	LMOf2365_2759	-	ABC transporter, ATP-binding protein
2735	 39.90	0	2811087..2813417	+	776	46908959	-	LMOf2365_2760	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
2736	 39.13	0	2813457..2814905	-	482	46908960	bglA	LMOf2365_2761	-	6-phospho-beta-glucosidase
2737	 38.35	0	2814898..2816751	-	617	46908961	-	LMOf2365_2762	-	PTS system, beta-glucoside-specific, IIABC component
2738	 33.57	-1	2816851..2817696	-	281	46908962	-	LMOf2365_2763	-	BigG family transcription antiterminator
2739	 26.47	-2	2817852..2818055	-	67	46908963	-	LMOf2365_2764	-	hypothetical protein
2740	 34.46	0	2818052..2818675	-	207	46908964	-	LMOf2365_2765	-	ABC transporter, ATP-binding protein
2741	 30.57	-2	2818668..2820836	-	722	46908965	-	LMOf2365_2766	-	bacteriocin immunity protein, putative
2742	 38.13	0	2820899..2821294	-	131	46908966	-	LMOf2365_2767	-	bacteriocin, putative
2743	 37.70	0	2821895..2823085	+	396	46908967	-	LMOf2365_2768	-	Bcr/CflA subfamily drug resistance transporter
2744	 32.35	-1	2823218..2823727	-	169	46908968	-	LMOf2365_2769	-	hypothetical protein
2745	 40.96	0	2824049..2825149	-	366	46908969	ychF	LMOf2365_2770	-	translation-associated GTPase
2746	 36.89	0	2825300..2825608	-	102	46908970	-	LMOf2365_2771	-	PTS system, beta-glucoside-specific, IIA component
2747	 41.39	0	2825614..2827884	-	756	46908971	bglX-2	LMOf2365_2772	-	beta-glucosidase
2748	 34.33	0	2827919..2828218	-	99	46908972	-	LMOf2365_2773	-	PTS system, beta-glucoside-specific, IIB component
2749	 38.66	0	2828233..2829528	-	431	46908973	-	LMOf2365_2774	-	PTS system, beta-glucoside-specific, IIC component
2750	 35.94	0	2829678..2831594	-	638	46908974	-	LMOf2365_2775	-	PRD domain-containing protein
2751	 40.70	0	2831805..2833271	-	488	46908975	kaT	LMOf2365_2776	-	catalase
2752	 37.68	0	2833420..2833626	-	68	46908976	-	LMOf2365_2777	-	hypothetical protein
2753	 35.21	0	2833630..2834481	-	283	46908977	-	LMOf2365_2778	-	ParB family chromosome partioning protein
2754	 36.22	0	2834474..2835235	-	253	46908978	soj	LMOf2365_2779	-	sporulation initiation inhibitor protein SOJ
2755	 36.63	0	2835459..2836217	-	252	46908979	-	LMOf2365_2780	-	DNA-binding protein
2756	 38.67	0	2836376..2836675	-	99	46908980	-	LMOf2365_2781	-	putative lipoprotein
2757	 39.06	0	2836687..2837541	-	284	46908981	-	LMOf2365_2782	-	ParB family chromosome partioning protein
2758	 37.67	0	2837713..2838519	-	268	46908982	-	LMOf2365_2783	-	RpiR family phosphosugar-binding transcriptional regulator
2759	 42.83	+1	2838503..2839408	-	301	46908983	-	LMOf2365_2784	-	ROK family protein
2760	 43.18	+1	2839433..2839879	-	148	46908984	-	LMOf2365_2785	-	PTS system, IIA component
2761	 40.79	0	2839892..2840548	-	218	46908985	-	LMOf2365_2786	-	HAD superfamily hydrolase
2762	 40.94	0	2840611..2842017	-	468	46908986	mtlA	LMOf2365_2787	-	PTS system, mannitol-specific, IIBC component
2763	 39.62	0	2842051..2843052	-	333	46908987	-	LMOf2365_2788	-	Gfo/Idh/MocA family oxidoreductase
2764	 42.29	+1	2843072..2843752	-	226	46908988	-	LMOf2365_2789	-	N-acetylmannosamine-6-phosphate 2-epimerase
2765	 41.56	+1	2843969..2844685	-	238	46908989	gidB	LMOf2365_2790	-	glucose-inhibited division protein B
2766	 26.50	-2	2844747..2844863	-	38	46908990	-	LMOf2365_2791	-	hypothetical protein
2767	 34.46	0	2844838..2845104	-	88	46908991	-	LMOf2365_2792	-	hypothetical protein
2768	 34.43	0	2845106..2845471	-	121	46908992	-	LMOf2365_2793	-	hypothetical protein
2769	 41.92	+1	2845464..2846744	-	426	46908993	-	LMOf2365_2794	-	hypothetical protein
2770	 32.30	-1	2846750..2847136	-	128	46908994	-	LMOf2365_2795	-	hypothetical protein
2771	 32.56	-1	2847264..2847650	-	128	46908995	-	LMOf2365_2796	-	hypothetical protein
2772	 31.22	-1	2847778..2848155	-	125	46908996	-	LMOf2365_2797	-	hypothetical protein
2773	 28.64	-2	2848585..2849565	-	326	46908997	-	LMOf2365_2798	-	hypothetical protein
2774	 30.32	-2	2851210..2852040	+	276	46908998	-	LMOf2365_2799	-	DNA-binding protein
2775	 42.55	+1	2853048..2854946	-	632	46908999	gidA	LMOf2365_2801	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2776	 43.45	+1	2854971..2856344	-	457	46909000	trmE	LMOf2365_2802	-	tRNA modification GTPase TrmE
2777	 40.90	0	2856702..2857520	+	272	46909001	-	LMOf2365_2803	-	D-alanyl-D-alanine carboxypeptidase, putative
2778	 36.02	0	2857576..2858283	-	235	46909002	-	LMOf2365_2804	-	hypothetical protein
2779	 39.96	0	2858307..2858834	-	175	46909003	-	LMOf2365_2805	-	TetR family transcriptional regulator
2780	 46.04	+2	2858995..2859726	+	243	46909004	fabG	LMOf2365_2806	-	3-ketoacyl-(acyl-carrier-protein) reductase
2781	 38.69	0	2859773..2860966	-	397	46909005	-	LMOf2365_2807	-	major facilitator family transporter
2782	 40.54	0	2861054..2862247	-	397	46909006	-	LMOf2365_2808	-	carboxypeptidase, putative
2783	 40.47	0	2862263..2863663	-	466	46909007	-	LMOf2365_2809	-	major facilitator family transporter
2784	 40.49	0	2863663..2864850	-	395	46909008	-	LMOf2365_2810	-	M20/M25/M40 family peptidase
2785	 37.09	0	2865059..2867401	-	780	46909009	-	LMOf2365_2811	-	AraC family transcriptional regulator
2786	 37.99	0	2867614..2870364	+	916	46909010	-	LMOf2365_2812	-	cell wall surface anchor family protein
2787	 37.35	0	2870409..2870732	-	107	46909011	-	LMOf2365_2813	-	hypothetical protein
2788	 41.71	+1	2870740..2871981	-	413	46909012	-	LMOf2365_2814	-	hypothetical protein
2789	 39.85	0	2872070..2873281	-	403	46909013	-	LMOf2365_2815	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2790	 40.93	0	2873250..2874341	-	363	46909014	serC	LMOf2365_2816	-	phosphoserine aminotransferase
2791	 41.43	0	2874712..2875860	-	382	46909015	-	LMOf2365_2817	-	major facilitator family transporter
2792	 40.90	0	2875874..2876296	-	140	46909016	-	LMOf2365_2818	-	MarR family transcriptional regulator
2793	 37.01	0	2876399..2876752	-	117	46909017	-	LMOf2365_2819	-	hypothetical protein
2794	 39.33	0	2876946..2877545	+	199	46909018	-	LMOf2365_2820	-	hypothetical protein
2795	 37.38	0	2877603..2877923	-	106	46909019	trx-2	LMOf2365_2821	-	thioredoxin
2796	 38.01	0	2878046..2878708	-	220	46909020	-	LMOf2365_2822	-	beta-phosphoglucomutase
2797	 44.56	+1	2878705..2879826	-	373	46909021	garK-2	LMOf2365_2823	-	glycerate kinase 2
2798	 40.17	0	2879823..2882000	-	725	46909022	-	LMOf2365_2824	-	glycosyl transferase family protein
2799	 42.15	+1	2881997..2883028	-	343	46909023	-	LMOf2365_2825	-	Gfo/Idh/MocA family oxidoreductase
2800	 38.87	0	2883085..2883879	-	264	46909024	ycjR	LMOf2365_2826	-	YcjR protein
2801	 42.07	+1	2883892..2884944	-	350	46909025	-	LMOf2365_2827	-	alcohol dehydrogenase, zinc-dependent
2802	 37.21	0	2884963..2885814	-	283	46909026	-	LMOf2365_2828	-	ABC transporter, permease protein
2803	 35.26	0	2885801..2886682	-	293	46909027	-	LMOf2365_2829	-	ABC transporter, permease protein
2804	 36.66	0	2886758..2888050	-	430	46909028	-	LMOf2365_2830	-	ABC transporter, substrate-binding protein
2805	 40.21	0	2888047..2889747	-	566	46909029	-	LMOf2365_2831	-	sucrose phosphorylase
2806	 38.50	0	2889974..2890999	+	341	46909030	-	LMOf2365_2832	-	LacI family transcription regulator
2807	 32.23	-1	2891136..2893130	-	664	46909031	-	LMOf2365_2833	-	hypothetical protein
2808	 38.10	0	2893263..2893787	-	174	46909032	-	LMOf2365_2834	-	acetyltransferase
2809	 40.13	0	2893962..2895374	+	470	46909033	-	LMOf2365_2835	-	major facilitator family transporter
2810	 33.97	-1	2895415..2895729	-	104	46909034	-	LMOf2365_2836	-	hypothetical protein
2811	 38.93	0	2895742..2896563	-	273	46909035	rhaD	LMOf2365_2837	-	rhamnulose-1-phosphate aldolase
2812	 38.72	0	2896576..2897838	-	420	46909036	rhaA	LMOf2365_2838	-	L-rhamnose isomerase
2813	 37.95	0	2897851..2899302	-	483	46909037	rhaB	LMOf2365_2839	-	rhamnulokinase
2814	 39.87	0	2899321..2900589	-	422	46909038	-	LMOf2365_2840	-	sugar transporter, putative
2815	 32.82	-1	2900712..2901692	+	326	46909039	-	LMOf2365_2841	-	AraC family transcriptional regulator
2816	 40.26	0	2901742..2902203	-	153	46909040	-	LMOf2365_2842	-	hypothetical protein
2817	 35.75	0	2902258..2902878	-	206	46909041	-	LMOf2365_2843	-	RNA-binding protein
2818	 36.23	0	2902875..2903738	-	287	46909042	-	LMOf2365_2844	-	SpoJ protein
2819	 30.56	-2	2903779..2904138	-	119	46909043	rnpA	LMOf2365_2845	-	ribonuclease P
2820	 37.04	0	2904228..2904362	-	44	46909044	rpmH	LMOf2365_2846	-	50S ribosomal protein L34
2821	 28.87	-2	2904530..2905000	-	156	46909045	-	LMOf2365_2847	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.