IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2636	 43.79	+1	2706821..2708866	-	681	46908860	kdpB	LMOf2365_2661	-	potassium-transporting ATPase subunit B
2637	 44.42	+1	2708878..2710563	-	561	46908861	kdpA	LMOf2365_2662	-	potassium-transporting ATPase subunit A
2638	 35.95	0	2710903..2711208	+	101	46908862	-	LMOf2365_2663	-	PTS system, beta-glucoside-specific, IIB component
2639	 40.90	0	2711343..2712650	+	435	46908863	-	LMOf2365_2664	-	PTS system, beta-glucoside-specific, IIC component
2640	 39.27	0	2712687..2712989	+	100	46908864	-	LMOf2365_2665	-	PTS system, beta-glucoside-specific, IIA component
2641	 39.39	0	2713011..2714132	-	373	46908865	-	LMOf2365_2666	-	cell cycle protein FtsW
2642	 42.11	+1	2714129..2715244	-	371	46908866	-	LMOf2365_2667	-	cell cycle protein FtsW
2643	 40.14	0	2715260..2717830	-	856	46908867	-	LMOf2365_2668	-	magnesium-translocating P-type ATPase
2644	 35.10	0	2718384..2718950	-	188	46908868	-	LMOf2365_2669	-	TetR family transcriptional regulator
2645	 40.09	0	2719112..2720887	+	591	46908869	-	LMOf2365_2670	-	autolysin
2646	 43.33	+1	2721118..2721447	-	109	46908870	-	LMOf2365_2671	-	hypothetical protein
2647	 43.54	+1	2721556..2722182	-	208	46908871	tmk	LMOf2365_2672	-	thymidylate kinase
2648	 43.55	+1	2722235..2723614	-	459	46908872	-	LMOf2365_2673	-	Orn/Lys/Arg decarboxylase
2649	 44.24	+1	2723798..2724787	+	329	46908873	-	LMOf2365_2674	-	dihydroxyacetone kinase, Dak1 subunit, putative
2650	 44.22	+1	2724809..2725405	+	198	46908874	-	LMOf2365_2675	-	dihydroxyacetone kinase, Dak2 subunit, putative
2651	 38.40	0	2725409..2725783	+	124	46908875	-	LMOf2365_2676	-	hypothetical protein
2652	 35.68	0	2725889..2726740	+	283	46908876	-	LMOf2365_2677	-	RpiR family phosphosugar-binding transcriptional regulator
2653	 39.40	0	2726859..2727698	+	279	46908877	-	LMOf2365_2678	-	Cof-like hydrolase
2654	 36.24	0	2727725..2728171	-	148	46908878	-	LMOf2365_2679	-	MutT/nudix family protein
2655	 41.52	+1	2728287..2729129	+	280	46908879	-	LMOf2365_2680	-	aldo/keto reductase family oxidoreductase
2656	 32.52	-1	2729175..2729420	-	81	46908880	-	LMOf2365_2681	-	hypothetical protein
2657	 39.70	0	2729435..2730031	-	198	46908881	recR	LMOf2365_2682	-	recombination protein RecR
2658	 35.85	0	2730140..2730457	-	105	46908882	-	LMOf2365_2683	-	hypothetical protein
2659	 43.51	+1	2730487..2732226	-	579	46908883	dnaX	LMOf2365_2684	-	DNA polymerase III, gamma and tau subunits
2660	 35.48	0	2732475..2732939	-	154	46908884	-	LMOf2365_2685	-	hypothetical protein
2661	 32.24	-1	2732957..2733139	-	60	46908885	-	LMOf2365_2686	-	hypothetical protein
2662	 31.08	-1	2733142..2733363	-	73	46908886	-	LMOf2365_2687	-	hypothetical protein
2663	 39.41	0	2733498..2734862	-	454	46908887	-	LMOf2365_2688	-	PTS system, cellobiose-specific, IIC component, putative
2664	 32.05	-1	2735303..2735458	+	51	46908888	-	LMOf2365_2689	-	hypothetical protein
2665	 32.71	-1	2735490..2736131	-	213	46908889	-	LMOf2365_2690	-	hypothetical protein
2666	 30.21	-2	2736674..2736769	-	31	46908890	-	LMOf2365_2691	-	hypothetical protein
2667	 40.99	0	2736828..2738342	-	504	46908891	-	LMOf2365_2692	-	gluconate kinase, putative
2668	 37.17	0	2738457..2739395	-	312	46908892	-	LMOf2365_2693	-	hypothetical protein
2669	 36.92	0	2739438..2740385	-	315	46908893	-	LMOf2365_2694	-	cell wall surface anchor family protein
2670	 40.98	0	2740528..2742267	-	579	46908894	cydD	LMOf2365_2695	-	ABC transporter, ATP-binding protein CydD
2671	 42.38	+1	2742267..2743991	-	574	46908895	cydC	LMOf2365_2696	-	ABC transporter, ATP-binding protein CydC
2672	 40.73	0	2743991..2745004	-	337	46908896	cydB	LMOf2365_2697	-	cytochrome d ubiquinol oxidase, subunit II
2673	 40.94	0	2744991..2746397	-	468	46908897	cydA	LMOf2365_2698	-	cytochrome d ubiquinol oxidase, subunit I
2674	 41.83	+1	2746779..2747249	-	156	46908898	-	LMOf2365_2699	-	cytidine/deoxycytidylate deaminase family protein
2675	 43.35	+1	2747444..2749021	+	525	46908899	acsA	LMOf2365_2700	-	acetyl-coenzyme A synthetase
2676	 27.96	-2	2749153..2749785	-	210	46908900	-	LMOf2365_2701	-	hypothetical protein
2677	 28.05	-2	2749802..2751088	-	428	46908901	-	LMOf2365_2702	-	hypothetical protein
2678	 27.33	-2	2751088..2752053	-	321	46908902	-	LMOf2365_2703	-	hypothetical protein
2679	 28.14	-2	2752956..2753186	+	76	46908903	-	LMOf2365_2704	-	hypothetical protein
2680	 34.33	0	2753260..2753559	-	99	46908904	-	LMOf2365_2705	-	hypothetical protein
2681	 30.77	-1	2753646..2753801	-	51	46908905	-	LMOf2365_2706	-	hypothetical protein
2682	 32.43	-1	2754033..2754806	-	257	46908906	-	LMOf2365_2707	-	hypothetical protein
2683	 42.50	+1	2754973..2755692	-	239	46908907	-	LMOf2365_2708	-	putative 6-phosphogluconolactonase
2684	 42.45	+1	2755772..2756506	+	244	46908908	-	LMOf2365_2709	-	multidrug efflux transporter transcriptional regulatory protein
2685	 44.16	+1	2756560..2757021	+	153	46908909	-	LMOf2365_2710	-	acetyltransferase
2686	 40.09	0	2757041..2757484	-	147	46908910	-	LMOf2365_2711	-	hypothetical protein
2687	 41.69	+1	2757542..2758894	-	450	46908911	-	LMOf2365_2712	-	MATE efflux family protein
2688	 37.56	0	2758891..2759340	-	149	46908912	-	LMOf2365_2713	-	MarR family transcriptional regulator
2689	 35.71	0	2759510..2760391	+	293	46908913	-	LMOf2365_2714	-	hypothetical protein
2690	 39.91	0	2760476..2760931	+	151	46908914	-	LMOf2365_2715	-	MerR family transcriptional regulator
2691	 42.96	+1	2760931..2761335	+	134	46908915	-	LMOf2365_2716	-	hypothetical protein
2692	 40.20	0	2761378..2761989	-	203	46908916	-	LMOf2365_2717	-	HAD family hydrolase
2693	 35.23	0	2762003..2762371	-	122	46908917	-	LMOf2365_2718	-	hypothetical protein
2694	 33.73	-1	2762454..2763206	-	250	46908918	-	LMOf2365_2719	-	phosphosugar-binding protein
2695	 39.56	0	2763372..2765330	+	652	46908919	-	LMOf2365_2720	-	PTS system, fructose-specific, IIABC component
2696	 38.39	0	2765391..2768039	+	882	46908920	-	LMOf2365_2721	-	glycosy hydrolase family protein
2697	 40.76	0	2768041..2769723	+	560	46908921	-	LMOf2365_2722	-	sucrose phosphorylase
2698	 44.62	+1	2769720..2770853	+	377	46908922	garK-1	LMOf2365_2723	-	glycerate kinase 2
2699	 40.44	0	2770858..2771814	-	318	46908923	-	LMOf2365_2724	-	LacI family transcription regulator
2700	 39.93	0	2771882..2773216	-	444	46908924	-	LMOf2365_2725	-	CBS domain-containing protein
2701	 40.58	0	2773334..2774023	-	229	46908925	-	LMOf2365_2726	-	NAD-dependent deacetylase
2702	 37.46	0	2774016..2774306	-	96	46908926	-	LMOf2365_2727	-	hypothetical protein
2703	 43.01	+1	2774296..2775504	-	402	46908927	-	LMOf2365_2728	-	major facilitator family transporter
2704	 36.21	0	2775621..2775968	-	115	46908928	-	LMOf2365_2729	-	SH3 domain-containing protein
2705	 42.33	+1	2775987..2776631	-	214	46908929	-	LMOf2365_2730	-	putative translaldolase
2706	 36.81	0	2776772..2777461	-	229	46908930	-	LMOf2365_2731	-	cyclic nucleotide-binding protein
2707	 41.15	0	2777791..2779518	+	575	46908931	-	LMOf2365_2732	-	ABC transporter, ATP-binding/permease protein
2708	 41.27	0	2779572..2779823	-	83	46908932	-	LMOf2365_2733	-	hypothetical protein
2709	 40.50	0	2779843..2781126	-	427	46908933	serS	LMOf2365_2734	-	seryl-tRNA synthetase
2710	 37.86	0	2781460..2781879	-	139	46908934	-	LMOf2365_2735	-	general stress protein 26
2711	 41.19	0	2782009..2782581	+	190	46908935	-	LMOf2365_2736	-	glutamine amidotransferase, class I
2712	 39.84	0	2782578..2784284	+	568	46908936	pabB	LMOf2365_2737	-	para-aminobenzoate synthase, component I
2713	 40.30	0	2784446..2786167	+	573	46908937	-	LMOf2365_2738	-	ABC transporter, ATP-binding/permease protein
2714	 39.48	0	2786167..2787939	+	590	46908938	-	LMOf2365_2739	-	ABC transporter, ATP-binding/permease protein
2715	 33.12	-1	2788119..2789972	+	617	46908939	-	LMOf2365_2740	-	hypothetical protein
2716	 34.81	0	2789983..2790930	+	315	46908940	-	LMOf2365_2741	-	glycosyl transferase, group 2 family protein
2717	 39.24	0	2791011..2792348	-	445	46908941	-	LMOf2365_2742	-	D-alanyl-D-alanine carboxypeptidase
2718	 39.57	0	2792527..2794194	-	555	46908942	-	LMOf2365_2743	-	CocE/NonD family hydrolase
2719	 40.67	0	2794303..2796456	-	717	46908943	topB	LMOf2365_2744	-	DNA topoisomerase III
2720	 41.29	0	2796480..2798252	-	590	46908944	recQ	LMOf2365_2745	-	ATP-dependent DNA helicase RecQ
2721	 41.72	+1	2798413..2799879	-	488	46908945	guaB	LMOf2365_2746	-	inosine-5'-monophosphate dehydrogenase
2722	 32.26	-1	2800064..2800156	+	30	46908946	-	LMOf2365_2747	-	hypothetical protein
2723	 41.24	0	2800167..2800697	-	176	46908947	-	LMOf2365_2748	-	hypothetical protein
2724	 40.41	0	2800755..2802365	-	536	46908948	-	LMOf2365_2749	-	ABC transporter, ATP-binding protein
2725	 35.56	0	2802721..2802855	+	44	46908949	-	LMOf2365_2750	-	hypothetical protein
2726	 42.41	+1	2802883..2804337	+	484	46908950	-	LMOf2365_2751	-	glycosy hydrolase family protein
2727	 41.25	0	2804381..2804683	+	100	46908951	-	LMOf2365_2752	-	PTS system, cellobiose-specific, IIB component
2728	 41.02	0	2804716..2806068	+	450	46908952	-	LMOf2365_2753	-	PTS system, cellobiose-specific, IIC component, putative
2729	 43.50	+1	2806080..2806964	+	294	46908953	-	LMOf2365_2754	-	ROK family protein
2730	 40.13	0	2806957..2807265	+	102	46908954	-	LMOf2365_2755	-	PTS system, IIA component
2731	 40.41	0	2807305..2808039	-	244	46908955	-	LMOf2365_2756	-	RpiR family phosphosugar-binding transcriptional regulator
2732	 37.71	0	2808140..2808802	-	220	46908956	-	LMOf2365_2757	-	hypothetical protein
2733	 35.90	0	2808873..2810003	-	376	46908957	-	LMOf2365_2758	-	hypothetical protein
2734	 36.71	0	2810030..2810917	-	295	46908958	-	LMOf2365_2759	-	ABC transporter, ATP-binding protein
2735	 39.90	0	2811087..2813417	+	776	46908959	-	LMOf2365_2760	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.