IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2564	 38.33	0	2646526..2646885	-	119	46908788	rplR	LMOf2365_2589	-	50S ribosomal protein L18
2565	 40.22	0	2646925..2647461	-	178	46908789	rplF	LMOf2365_2590	-	50S ribosomal protein L6
2566	 39.60	0	2647492..2647890	-	132	46908790	rpsH	LMOf2365_2591	-	30S ribosomal protein S8
2567	 41.40	0	2647921..2648106	-	61	46908791	rpsN	LMOf2365_2592	-	30S ribosomal protein S14
2568	 38.33	0	2648138..2648677	-	179	46908792	rplE	LMOf2365_2593	-	50S ribosomal protein L5
2569	 38.46	0	2648704..2649015	-	103	46908793	rplX	LMOf2365_2594	-	50S ribosomal protein L24
2570	 41.46	0	2649053..2649421	-	122	46908794	rplN	LMOf2365_2595	-	50S ribosomal protein L14
2571	 36.74	0	2649501..2649764	-	87	46908795	rpsQ	LMOf2365_2596	-	30S ribosomal protein S17
2572	 39.06	0	2649791..2649982	-	63	46908796	rpmC	LMOf2365_2597	-	50S ribosomal protein L29
2573	 44.14	+1	2649972..2650406	-	144	46908797	rplP	LMOf2365_2598	-	50S ribosomal protein L16
2574	 43.68	+1	2650409..2651065	-	218	46908798	rpsC	LMOf2365_2599	-	30S ribosomal protein S3
2575	 41.74	+1	2651069..2651425	-	118	46908799	rplV	LMOf2365_2600	-	50S ribosomal protein L22
2576	 42.65	+1	2651446..2651724	-	92	46908800	rpsS	LMOf2365_2601	-	30S ribosomal protein S19
2577	 42.81	+1	2651812..2652645	-	277	46908801	rplB	LMOf2365_2602	-	50S ribosomal protein L2
2578	 36.84	0	2652686..2652970	-	94	46908802	rplW	LMOf2365_2603	-	50S ribosomal protein L23
2579	 39.58	0	2652970..2653593	-	207	46908803	rplD	LMOf2365_2604	-	50S ribosomal protein L4
2580	 41.90	+1	2653619..2654248	-	209	46908804	rplC	LMOf2365_2605	-	50S ribosomal protein L3
2581	 40.78	0	2654283..2654591	-	102	46908805	rpsJ	LMOf2365_2606	-	30S ribosomal protein S10
2582	 40.07	0	2654953..2655753	-	266	46908806	-	LMOf2365_2607	-	cobalt transport protein
2583	 34.79	0	2655774..2656733	-	319	46908807	-	LMOf2365_2608	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2584	 36.75	0	2656815..2657897	-	360	46908808	-	LMOf2365_2609	-	thiamine biosynthesis lipoprotein ApbE, putative
2585	 35.89	0	2658061..2658960	-	299	46908809	-	LMOf2365_2610	-	putative lipoprotein
2586	 39.80	0	2659408..2661294	+	628	46908810	-	LMOf2365_2611	-	pyridine nucleotide-disulfide oxidoreductase family protein
2587	 38.85	0	2661470..2661904	+	144	46908811	-	LMOf2365_2612	-	hypothetical protein
2588	 42.36	+1	2661937..2662479	+	180	46908812	-	LMOf2365_2613	-	hypothetical protein
2589	 38.63	0	2662501..2663481	+	326	46908813	-	LMOf2365_2614	-	polyprenyl synthetase
2590	 37.46	0	2663571..2664902	+	443	46908814	-	LMOf2365_2615	-	serine/threonine protein phosphatase family protein
2591	 38.30	0	2664949..2665935	-	328	46908815	-	LMOf2365_2616	-	hypothetical protein
2592	 41.94	+1	2666041..2666784	-	247	46908816	-	LMOf2365_2617	-	hypothetical protein
2593	 43.06	+1	2666785..2667504	-	239	46908817	-	LMOf2365_2618	-	hypothetical protein
2594	 42.40	+1	2667464..2668213	-	249	46908818	-	LMOf2365_2619	-	creatinine amidohydrolase, putative
2595	 39.88	0	2668226..2669218	-	330	46908819	-	LMOf2365_2620	-	phosphotriesterase family protein
2596	 41.72	+1	2669288..2670586	-	432	46908820	ulaA	LMOf2365_2621	-	ascorbate-specific PTS system enzyme IIC
2597	 39.56	0	2670613..2670885	-	90	46908821	-	LMOf2365_2622	-	PTS system, lactose/cellobiose specific IIB subunit
2598	 40.69	0	2670888..2671322	-	144	46908822	-	LMOf2365_2623	-	PTS system IIA component domain-containing protein
2599	 36.46	0	2671394..2671489	-	31	46908823	-	LMOf2365_2624	-	hypothetical protein
2600	 38.66	0	2671515..2673581	-	688	46908824	-	LMOf2365_2625	-	PTS system, IIA component, putative
2601	 32.09	-1	2673736..2674218	-	160	46908825	-	LMOf2365_2626	-	hypothetical protein
2602	 32.25	-1	2674215..2674859	-	214	46908826	-	LMOf2365_2627	-	ABC transporter, ATP-binding protein
2603	 31.07	-1	2674871..2675620	-	249	46908827	-	LMOf2365_2628	-	hypothetical protein
2604	 31.19	-1	2675622..2676320	-	232	46908828	-	LMOf2365_2629	-	hypothetical protein
2605	 33.97	-1	2676307..2677092	-	261	46908829	-	LMOf2365_2630	-	hypothetical protein
2606	 33.58	-1	2677158..2677565	-	135	46908830	-	LMOf2365_2631	-	hypothetical protein
2607	 41.67	+1	2677749..2678936	-	395	46908831	tuf	LMOf2365_2632	-	elongation factor Tu
2608	 42.86	+1	2679045..2681132	-	695	46908832	fusA	LMOf2365_2633	-	elongation factor G
2609	 41.40	0	2681198..2681668	-	156	46908833	rpsG	LMOf2365_2634	-	30S ribosomal protein S7
2610	 39.13	0	2681699..2682112	-	137	46908834	rpsL	LMOf2365_2635	-	30S ribosomal protein S12
2611	 41.27	0	2682305..2683702	-	465	46908835	dgt	LMOf2365_2636	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2612	 40.00	0	2683718..2684197	-	159	46908836	-	LMOf2365_2637	-	acetyltransferase
2613	 33.74	-1	2684358..2685827	+	489	46908837	-	LMOf2365_2638	-	cell wall surface anchor family protein
2614	 45.27	+2	2685882..2686526	-	214	46908838	rpe-3	LMOf2365_2639	-	ribulose-phosphate 3-epimerase
2615	 45.39	+2	2686523..2688538	-	671	46908839	tkt-3	LMOf2365_2640	-	transketolase
2616	 39.56	0	2688572..2689246	-	224	46908840	-	LMOf2365_2641	-	ribulose-phosphate 3-epimerase family protein
2617	 42.40	+1	2689255..2689695	-	146	46908841	rpiB-3	LMOf2365_2642	-	ribose 5-phosphate isomerase B
2618	 41.47	0	2689890..2690921	-	343	46908842	-	LMOf2365_2643	-	alcohol dehydrogenase, zinc-dependent
2619	 41.31	0	2690923..2691975	-	350	46908843	-	LMOf2365_2644	-	alcohol dehydrogenase, zinc-dependent
2620	 40.25	0	2692012..2693283	-	423	46908844	-	LMOf2365_2645	-	PTS system, galactitol-specific, IIC component
2621	 36.88	0	2693344..2693625	-	93	46908845	-	LMOf2365_2646	-	PTS system, galactitol-specific, IIB component, putative
2622	 40.65	0	2693683..2694147	-	154	46908846	-	LMOf2365_2647	-	PTS system, IIA component
2623	 39.47	0	2694181..2696250	-	689	46908847	-	LMOf2365_2648	-	PTS system IIA component domain-containing protein
2624	 36.53	0	2696620..2697432	-	270	46908848	-	LMOf2365_2649	-	hypothetical protein
2625	 41.60	+1	2697506..2697868	-	120	46908849	-	LMOf2365_2650	-	hypothetical protein
2626	 43.36	+1	2697865..2698233	-	122	46908850	-	LMOf2365_2651	-	hypothetical protein
2627	 38.66	0	2698279..2699085	-	268	46908851	-	LMOf2365_2652	-	AraC family transcriptional regulator
2628	 42.04	+1	2699201..2699671	+	156	46908852	-	LMOf2365_2653	-	universal stress protein
2629	 43.86	+1	2699717..2700172	+	151	46908853	rpiB-4	LMOf2365_2654	-	ribose-5-phosphate isomerase B
2630	 41.81	+1	2700371..2700712	+	113	46908854	-	LMOf2365_2655	-	hypothetical protein
2631	 41.45	0	2700725..2701981	+	418	46908855	-	LMOf2365_2656	-	ImpB/MucB/SamB family protein
2632	 41.08	0	2701983..2702795	-	270	46908856	-	LMOf2365_2657	-	alpha/beta fold family hydrolase
2633	 43.53	+1	2702836..2703531	-	231	46908857	kdpE	LMOf2365_2658	-	DNA-binding response regulator KdpE
2634	 42.36	+1	2703528..2706218	-	896	46908858	kdpD	LMOf2365_2659	-	sensor histidine kinase KdpD
2635	 42.06	+1	2706234..2706806	-	190	46908859	kdpC	LMOf2365_2660	-	K+-transporting ATPase, C subunit
2636	 43.79	+1	2706821..2708866	-	681	46908860	kdpB	LMOf2365_2661	-	potassium-transporting ATPase subunit B
2637	 44.42	+1	2708878..2710563	-	561	46908861	kdpA	LMOf2365_2662	-	potassium-transporting ATPase subunit A
2638	 35.95	0	2710903..2711208	+	101	46908862	-	LMOf2365_2663	-	PTS system, beta-glucoside-specific, IIB component
2639	 40.90	0	2711343..2712650	+	435	46908863	-	LMOf2365_2664	-	PTS system, beta-glucoside-specific, IIC component
2640	 39.27	0	2712687..2712989	+	100	46908864	-	LMOf2365_2665	-	PTS system, beta-glucoside-specific, IIA component
2641	 39.39	0	2713011..2714132	-	373	46908865	-	LMOf2365_2666	-	cell cycle protein FtsW
2642	 42.11	+1	2714129..2715244	-	371	46908866	-	LMOf2365_2667	-	cell cycle protein FtsW
2643	 40.14	0	2715260..2717830	-	856	46908867	-	LMOf2365_2668	-	magnesium-translocating P-type ATPase
2644	 35.10	0	2718384..2718950	-	188	46908868	-	LMOf2365_2669	-	TetR family transcriptional regulator
2645	 40.09	0	2719112..2720887	+	591	46908869	-	LMOf2365_2670	-	autolysin
2646	 43.33	+1	2721118..2721447	-	109	46908870	-	LMOf2365_2671	-	hypothetical protein
2647	 43.54	+1	2721556..2722182	-	208	46908871	tmk	LMOf2365_2672	-	thymidylate kinase
2648	 43.55	+1	2722235..2723614	-	459	46908872	-	LMOf2365_2673	-	Orn/Lys/Arg decarboxylase
2649	 44.24	+1	2723798..2724787	+	329	46908873	-	LMOf2365_2674	-	dihydroxyacetone kinase, Dak1 subunit, putative
2650	 44.22	+1	2724809..2725405	+	198	46908874	-	LMOf2365_2675	-	dihydroxyacetone kinase, Dak2 subunit, putative
2651	 38.40	0	2725409..2725783	+	124	46908875	-	LMOf2365_2676	-	hypothetical protein
2652	 35.68	0	2725889..2726740	+	283	46908876	-	LMOf2365_2677	-	RpiR family phosphosugar-binding transcriptional regulator
2653	 39.40	0	2726859..2727698	+	279	46908877	-	LMOf2365_2678	-	Cof-like hydrolase
2654	 36.24	0	2727725..2728171	-	148	46908878	-	LMOf2365_2679	-	MutT/nudix family protein
2655	 41.52	+1	2728287..2729129	+	280	46908879	-	LMOf2365_2680	-	aldo/keto reductase family oxidoreductase
2656	 32.52	-1	2729175..2729420	-	81	46908880	-	LMOf2365_2681	-	hypothetical protein
2657	 39.70	0	2729435..2730031	-	198	46908881	recR	LMOf2365_2682	-	recombination protein RecR
2658	 35.85	0	2730140..2730457	-	105	46908882	-	LMOf2365_2683	-	hypothetical protein
2659	 43.51	+1	2730487..2732226	-	579	46908883	dnaX	LMOf2365_2684	-	DNA polymerase III, gamma and tau subunits
2660	 35.48	0	2732475..2732939	-	154	46908884	-	LMOf2365_2685	-	hypothetical protein
2661	 32.24	-1	2732957..2733139	-	60	46908885	-	LMOf2365_2686	-	hypothetical protein
2662	 31.08	-1	2733142..2733363	-	73	46908886	-	LMOf2365_2687	-	hypothetical protein
2663	 39.41	0	2733498..2734862	-	454	46908887	-	LMOf2365_2688	-	PTS system, cellobiose-specific, IIC component, putative
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.