IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2401	 40.05	0	2478928..2479671	-	247	46908625	est-2	LMOf2365_2425	-	carboxylesterase
2402	 37.22	0	2479854..2480573	-	239	46908626	-	LMOf2365_2426	-	hypothetical protein
2403	 38.69	0	2480706..2480873	-	55	46908627	-	LMOf2365_2427	-	hypothetical protein
2404	 40.76	0	2480982..2482274	-	430	46908628	eno	LMOf2365_2428	-	enolase
2405	 40.38	0	2482410..2483942	-	510	46908629	gpmA	LMOf2365_2429	-	phosphoglyceromutase
2406	 41.93	+1	2483944..2484699	-	251	46908630	tpiA-2	LMOf2365_2430	-	triosephosphate isomerase
2407	 39.55	0	2484745..2485935	-	396	46908631	pgk	LMOf2365_2431	-	phosphoglycerate kinase
2408	 39.07	0	2486070..2487080	-	336	46908632	gap	LMOf2365_2432	-	glyceraldehyde-3-phosphate dehydrogenase
2409	 42.50	+1	2487113..2488159	-	348	46908633	-	LMOf2365_2433	-	transcriptional regulator, putative
2410	 38.91	0	2488600..2489943	-	447	46908634	-	LMOf2365_2434	-	RNA polymerase factor sigma-54
2411	 38.19	0	2490103..2491029	-	308	46908635	-	LMOf2365_2435	-	renal dipeptidase family protein
2412	 34.81	0	2493351..2493959	-	202	46908636	-	LMOf2365_2437	-	TetR family transcriptional regulator
2413	 36.73	0	2493976..2494476	-	166	46908637	-	LMOf2365_2438	-	hypothetical protein
2414	 35.71	0	2494607..2494942	+	111	46908638	-	LMOf2365_2439	-	hypothetical protein
2415	 39.32	0	2495190..2496626	-	478	46908639	-	LMOf2365_2440	-	chitin-binding protein/carbohydrate-binding protein
2416	 39.36	0	2496783..2497379	+	198	46908640	clpP	LMOf2365_2441	-	ATP-dependent Clp protease proteolytic subunit
2417	 38.15	0	2497428..2498819	-	463	46908641	-	LMOf2365_2442	-	amino acid permease family protein
2418	 32.90	-1	2499036..2500202	+	388	46908642	-	LMOf2365_2443	-	leucine-rich repeat-containing protein
2419	 40.12	0	2500255..2501271	-	338	46908643	-	LMOf2365_2444	-	NADPH dehydrogenase NamA
2420	 40.43	0	2501298..2502269	-	323	46908644	-	LMOf2365_2445	-	hypothetical protein
2421	 40.35	0	2502277..2503245	-	322	46908645	-	LMOf2365_2446	-	hypothetical protein
2422	 39.27	0	2503247..2504122	-	291	46908646	-	LMOf2365_2447	-	hypothetical protein
2423	 39.69	0	2504230..2505960	-	576	46908647	-	LMOf2365_2448	-	phosphoglucomutase/phosphomannomutase family protein
2424	 39.94	0	2506002..2507045	-	347	46908648	mro	LMOf2365_2449	-	aldose 1-epimerase
2425	 39.13	0	2507080..2508063	-	327	46908649	galE	LMOf2365_2450	-	UDP-glucose 4-epimerase
2426	 41.67	+1	2508183..2509142	-	319	46908650	trxB	LMOf2365_2451	-	thioredoxin-disulfide reductase
2427	 36.38	0	2509221..2510696	-	491	46908651	-	LMOf2365_2452	-	TPR domain-containing protein
2428	 43.17	+1	2510781..2511278	-	165	46908652	-	LMOf2365_2453	-	hexapeptide transferase family protein
2429	 37.61	0	2511282..2511935	-	217	46908653	-	LMOf2365_2454	-	pyrophosphatase PpaX
2430	 37.17	0	2511979..2512812	-	277	46908654	lgt	LMOf2365_2455	-	prolipoprotein diacylglyceryl transferase
2431	 39.40	0	2512898..2513836	-	312	46908655	hprK	LMOf2365_2456	-	HPr kinase/phosphorylase
2432	 33.05	-1	2514023..2514376	-	117	46908656	-	LMOf2365_2457	-	hypothetical protein
2433	 37.81	0	2514385..2514585	-	66	46908657	-	LMOf2365_2458	-	PspC domain-containing protein, truncated
2434	 38.78	0	2514609..2515820	-	403	46908658	-	LMOf2365_2459	-	PspC domain-containing protein
2435	 34.76	0	2515887..2517149	-	420	46908659	-	LMOf2365_2460	-	hypothetical protein
2436	 38.77	0	2517358..2520228	-	956	46908660	uvrA	LMOf2365_2461	-	excinuclease ABC, A subunit
2437	 40.01	0	2520236..2522212	-	658	46908661	uvrB	LMOf2365_2462	-	excinuclease ABC subunit B
2438	 35.42	0	2522463..2522702	-	79	46908662	-	LMOf2365_2463	-	hypothetical protein
2439	 36.11	0	2522723..2523370	-	215	46908663	-	LMOf2365_2464	-	HD domain-containing protein
2440	 34.63	0	2523392..2523778	-	128	46908664	-	LMOf2365_2465	-	hypothetical protein
2441	 38.24	0	2523884..2524189	-	101	46908665	-	LMOf2365_2466	-	ArsR family transcriptional regulator
2442	 37.88	0	2524457..2525116	-	219	46908666	-	LMOf2365_2467	-	phosphate transport system protein PhoU
2443	 39.49	0	2525129..2525908	-	259	46908667	-	LMOf2365_2468	-	phosphate ABC transporter, ATP-binding protein
2444	 38.48	0	2525923..2526738	-	271	46908668	-	LMOf2365_2469	-	phosphate ABC transporter, ATP-binding protein
2445	 42.26	+1	2526766..2527650	-	294	46908669	-	LMOf2365_2470	-	phosphate ABC transporter, permease protein
2446	 40.38	0	2527647..2528597	-	316	46908670	-	LMOf2365_2471	-	phosphate ABC transporter, permease protein
2447	 40.15	0	2528664..2529572	-	302	46908671	-	LMOf2365_2472	-	phosphate ABC transporter, phosphate-binding protein
2448	 38.68	0	2529828..2531603	-	591	46908672	-	LMOf2365_2473	-	histidine kinase
2449	 36.24	0	2531603..2532325	-	240	46908673	phoP	LMOf2365_2474	-	DNA-binding response regulator PhoP
2450	 38.01	0	2532464..2533639	-	391	46908674	-	LMOf2365_2475	-	hypothetical protein
2451	 36.02	0	2533667..2535115	-	482	46908675	cls-2	LMOf2365_2476	-	cardiolipin synthetase
2452	 38.29	0	2535239..2536549	-	436	46908676	-	LMOf2365_2477	-	M48 family peptidase
2453	 37.23	0	2536669..2537874	-	401	46908677	-	LMOf2365_2478	-	NLP/P60 family protein
2454	 37.18	0	2537950..2538834	-	294	46908678	ftsX	LMOf2365_2479	-	cell division ABC transporter, permease protein FtsX
2455	 39.01	0	2538824..2539510	-	228	46908679	ftsE	LMOf2365_2480	-	cell division ATP-binding protein FtsE
2456	 38.54	0	2540017..2540880	-	287	46908680	-	LMOf2365_2481	-	YitT family protein
2457	 38.29	0	2540886..2541987	-	366	46908681	prfB	LMOf2365_2482	-	peptide chain release factor 2
2458	 38.23	0	2542072..2544585	-	837	46908682	secA	LMOf2365_2483	-	preprotein translocase subunit SecA
2459	 34.40	0	2544816..2545379	-	187	46908683	yfiA	LMOf2365_2484	-	ribosomal subunit interface protein
2460	 34.70	0	2545574..2546230	-	218	46908684	-	LMOf2365_2485	-	comFC family protein
2461	 39.24	0	2546223..2547542	-	439	46908685	-	LMOf2365_2486	-	helicase family protein
2462	 38.85	0	2547738..2548589	-	283	46908686	-	LMOf2365_2487	-	DegV family protein
2463	 37.99	0	2548610..2549296	-	228	46908687	degU	LMOf2365_2488	-	DNA-binding response regulator DegU
2464	 36.64	0	2549681..2550316	+	211	46908688	-	LMOf2365_2489	-	hypothetical protein
2465	 33.52	-1	2550318..2550863	+	181	46908689	-	LMOf2365_2490	-	acetyltransferase
2466	 36.36	0	2551039..2552097	+	352	46908690	-	LMOf2365_2491	-	transcriptional regulator, putative
2467	 35.23	0	2552135..2553187	-	350	46908691	-	LMOf2365_2492	-	glycosyl transferase, group 4 family protein
2468	 38.04	0	2553195..2554319	-	374	46908692	-	LMOf2365_2493	-	N-acylamino acid racemase
2469	 38.23	0	2554320..2555054	-	244	46908693	-	LMOf2365_2494	-	teichoic acid biosynthesis protein A
2470	 34.05	-1	2555181..2556014	-	277	46908694	-	LMOf2365_2495	-	LysM domain-containing protein
2471	 34.15	-1	2556405..2556770	-	121	46908695	ssb-2	LMOf2365_2496	-	single-strand binding protein
2472	 37.70	0	2557021..2557455	-	144	46908696	fabZ	LMOf2365_2497	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
2473	 36.85	0	2557478..2558473	-	331	46908697	-	LMOf2365_2498	-	mbl protein
2474	 38.44	0	2558636..2559928	-	430	46908698	murA-1	LMOf2365_2499	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2475	 25.74	-2	2560110..2560346	-	78	46908699	-	LMOf2365_2500	-	hypothetical protein
2476	 41.23	0	2560468..2560872	-	134	46908700	atpC	LMOf2365_2501	-	F0F1 ATP synthase subunit epsilon
2477	 40.65	0	2560894..2562315	-	473	46908701	atpD-2	LMOf2365_2502	-	F0F1 ATP synthase subunit beta
2478	 38.72	0	2562376..2563248	-	290	46908702	atpG	LMOf2365_2503	-	F0F1 ATP synthase subunit gamma
2479	 41.32	0	2563286..2564800	-	504	46908703	atpA-2	LMOf2365_2504	-	F0F1 ATP synthase subunit alpha
2480	 36.48	0	2564827..2565366	-	179	46908704	atpH	LMOf2365_2505	-	F0F1 ATP synthase subunit delta
2481	 38.01	0	2565363..2565875	-	170	46908705	atpF	LMOf2365_2506	-	F0F1 ATP synthase subunit B
2482	 43.38	+1	2565963..2566181	-	72	46908706	atpE	LMOf2365_2507	-	F0F1 ATP synthase subunit C
2483	 37.24	0	2566253..2566969	-	238	46908707	atpB	LMOf2365_2508	-	F0F1 ATP synthase subunit A
2484	 36.34	0	2566976..2567374	-	132	46908708	atpI	LMOf2365_2509	-	ATP synthase protein I
2485	 40.53	0	2568205..2569344	-	379	46908709	-	LMOf2365_2510	-	UDP-N-acetylglucosamine 2-epimerase
2486	 40.48	0	2569462..2570091	-	209	46908710	upp	LMOf2365_2511	-	uracil phosphoribosyltransferase
2487	 39.61	0	2570229..2571470	-	413	46908711	glyA	LMOf2365_2512	-	serine hydroxymethyltransferase
2488	 39.71	0	2571606..2572013	-	135	46908712	-	LMOf2365_2513	-	low molecular weight phosphotyrosine protein phosphatase family protein
2489	 42.97	+1	2572010..2573047	-	345	46908713	-	LMOf2365_2514	-	Sua5/YciO/YrdC/YwlC family protein
2490	 38.38	0	2573348..2574199	-	283	46908714	-	LMOf2365_2515	-	HemK family modification methylase
2491	 42.90	+1	2574186..2575262	-	358	46908715	prfA	LMOf2365_2516	-	peptide chain release factor 1
2492	 34.03	-1	2575285..2575860	-	191	46908716	-	LMOf2365_2517	-	thymidine kinase
2493	 45.10	+1	2575972..2576838	-	288	46908717	thrB	LMOf2365_2518	-	homoserine kinase
2494	 42.23	+1	2576838..2577893	-	351	46908718	thrC	LMOf2365_2519	-	threonine synthase
2495	 40.87	0	2577896..2579182	-	428	46908719	hom	LMOf2365_2520	-	homoserine dehydrogenase
2496	 40.65	0	2579404..2579649	-	81	46908720	rpmE2	LMOf2365_2521	-	50S ribosomal protein L31 type B
2497	 30.14	-2	2579751..2580188	-	145	46908721	gtcA	LMOf2365_2522	-	cell wall teichoic acid glycosylation protein GtcA
2498	 39.23	0	2580221..2581492	-	423	46908722	rho	LMOf2365_2523	-	transcription termination factor Rho
2499	 40.80	0	2581597..2582868	-	423	46908723	murA-2	LMOf2365_2524	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2500	 38.08	0	2582985..2584058	-	357	46908724	-	LMOf2365_2525	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.