IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2387	 33.63	-1	2460140..2460481	+	113	46908611	-	LMOf2365_2411	-	hypothetical protein
2388	 34.64	0	2460513..2460896	-	127	46908612	-	LMOf2365_2412	-	hypothetical protein
2389	 39.35	0	2460952..2461848	-	298	46908613	-	LMOf2365_2413	-	hypothetical protein
2390	 37.37	0	2461893..2462462	-	189	46908614	-	LMOf2365_2414	-	hypothetical protein
2391	 31.19	-1	2462638..2463057	-	139	46908615	-	LMOf2365_2415	-	hypothetical protein
2392	 34.46	0	2463980..2465041	-	353	46908616	-	LMOf2365_2416	-	leucine-rich repeat-containing protein
2393	 41.50	0	2465092..2469024	-	1310	46908617	-	LMOf2365_2417	-	glycosy hydrolase family protein
2394	 35.87	0	2469039..2469983	-	314	46908618	-	LMOf2365_2418	-	leucine-rich repeat-containing protein
2395	 39.26	0	2470044..2473319	-	1091	46908619	-	LMOf2365_2419	-	glycosy hydrolase family protein
2396	 30.91	-1	2473702..2474610	+	302	46908620	-	LMOf2365_2420	-	transcriptional activator, putative
2397	 38.92	0	2474666..2475130	-	154	46908621	smpB	LMOf2365_2421	-	SsrA-binding protein
2398	 40.90	0	2475146..2477497	-	783	46908622	-	LMOf2365_2422	-	ribonuclease R, putative
2399	 38.96	0	2477561..2478307	-	248	46908623	est-1	LMOf2365_2423	-	carboxylesterase
2400	 39.32	0	2478605..2478838	-	77	46908624	secG	LMOf2365_2424	-	preprotein translocase subunit SecG
2401	 40.05	0	2478928..2479671	-	247	46908625	est-2	LMOf2365_2425	-	carboxylesterase
2402	 37.22	0	2479854..2480573	-	239	46908626	-	LMOf2365_2426	-	hypothetical protein
2403	 38.69	0	2480706..2480873	-	55	46908627	-	LMOf2365_2427	-	hypothetical protein
2404	 40.76	0	2480982..2482274	-	430	46908628	eno	LMOf2365_2428	-	enolase
2405	 40.38	0	2482410..2483942	-	510	46908629	gpmA	LMOf2365_2429	-	phosphoglyceromutase
2406	 41.93	+1	2483944..2484699	-	251	46908630	tpiA-2	LMOf2365_2430	-	triosephosphate isomerase
2407	 39.55	0	2484745..2485935	-	396	46908631	pgk	LMOf2365_2431	-	phosphoglycerate kinase
2408	 39.07	0	2486070..2487080	-	336	46908632	gap	LMOf2365_2432	-	glyceraldehyde-3-phosphate dehydrogenase
2409	 42.50	+1	2487113..2488159	-	348	46908633	-	LMOf2365_2433	-	transcriptional regulator, putative
2410	 38.91	0	2488600..2489943	-	447	46908634	-	LMOf2365_2434	-	RNA polymerase factor sigma-54
2411	 38.19	0	2490103..2491029	-	308	46908635	-	LMOf2365_2435	-	renal dipeptidase family protein
2412	 34.81	0	2493351..2493959	-	202	46908636	-	LMOf2365_2437	-	TetR family transcriptional regulator
2413	 36.73	0	2493976..2494476	-	166	46908637	-	LMOf2365_2438	-	hypothetical protein
2414	 35.71	0	2494607..2494942	+	111	46908638	-	LMOf2365_2439	-	hypothetical protein
2415	 39.32	0	2495190..2496626	-	478	46908639	-	LMOf2365_2440	-	chitin-binding protein/carbohydrate-binding protein
2416	 39.36	0	2496783..2497379	+	198	46908640	clpP	LMOf2365_2441	-	ATP-dependent Clp protease proteolytic subunit
2417	 38.15	0	2497428..2498819	-	463	46908641	-	LMOf2365_2442	-	amino acid permease family protein
2418	 32.90	-1	2499036..2500202	+	388	46908642	-	LMOf2365_2443	-	leucine-rich repeat-containing protein
2419	 40.12	0	2500255..2501271	-	338	46908643	-	LMOf2365_2444	-	NADPH dehydrogenase NamA
2420	 40.43	0	2501298..2502269	-	323	46908644	-	LMOf2365_2445	-	hypothetical protein
2421	 40.35	0	2502277..2503245	-	322	46908645	-	LMOf2365_2446	-	hypothetical protein
2422	 39.27	0	2503247..2504122	-	291	46908646	-	LMOf2365_2447	-	hypothetical protein
2423	 39.69	0	2504230..2505960	-	576	46908647	-	LMOf2365_2448	-	phosphoglucomutase/phosphomannomutase family protein
2424	 39.94	0	2506002..2507045	-	347	46908648	mro	LMOf2365_2449	-	aldose 1-epimerase
2425	 39.13	0	2507080..2508063	-	327	46908649	galE	LMOf2365_2450	-	UDP-glucose 4-epimerase
2426	 41.67	+1	2508183..2509142	-	319	46908650	trxB	LMOf2365_2451	-	thioredoxin-disulfide reductase
2427	 36.38	0	2509221..2510696	-	491	46908651	-	LMOf2365_2452	-	TPR domain-containing protein
2428	 43.17	+1	2510781..2511278	-	165	46908652	-	LMOf2365_2453	-	hexapeptide transferase family protein
2429	 37.61	0	2511282..2511935	-	217	46908653	-	LMOf2365_2454	-	pyrophosphatase PpaX
2430	 37.17	0	2511979..2512812	-	277	46908654	lgt	LMOf2365_2455	-	prolipoprotein diacylglyceryl transferase
2431	 39.40	0	2512898..2513836	-	312	46908655	hprK	LMOf2365_2456	-	HPr kinase/phosphorylase
2432	 33.05	-1	2514023..2514376	-	117	46908656	-	LMOf2365_2457	-	hypothetical protein
2433	 37.81	0	2514385..2514585	-	66	46908657	-	LMOf2365_2458	-	PspC domain-containing protein, truncated
2434	 38.78	0	2514609..2515820	-	403	46908658	-	LMOf2365_2459	-	PspC domain-containing protein
2435	 34.76	0	2515887..2517149	-	420	46908659	-	LMOf2365_2460	-	hypothetical protein
2436	 38.77	0	2517358..2520228	-	956	46908660	uvrA	LMOf2365_2461	-	excinuclease ABC, A subunit
2437	 40.01	0	2520236..2522212	-	658	46908661	uvrB	LMOf2365_2462	-	excinuclease ABC subunit B
2438	 35.42	0	2522463..2522702	-	79	46908662	-	LMOf2365_2463	-	hypothetical protein
2439	 36.11	0	2522723..2523370	-	215	46908663	-	LMOf2365_2464	-	HD domain-containing protein
2440	 34.63	0	2523392..2523778	-	128	46908664	-	LMOf2365_2465	-	hypothetical protein
2441	 38.24	0	2523884..2524189	-	101	46908665	-	LMOf2365_2466	-	ArsR family transcriptional regulator
2442	 37.88	0	2524457..2525116	-	219	46908666	-	LMOf2365_2467	-	phosphate transport system protein PhoU
2443	 39.49	0	2525129..2525908	-	259	46908667	-	LMOf2365_2468	-	phosphate ABC transporter, ATP-binding protein
2444	 38.48	0	2525923..2526738	-	271	46908668	-	LMOf2365_2469	-	phosphate ABC transporter, ATP-binding protein
2445	 42.26	+1	2526766..2527650	-	294	46908669	-	LMOf2365_2470	-	phosphate ABC transporter, permease protein
2446	 40.38	0	2527647..2528597	-	316	46908670	-	LMOf2365_2471	-	phosphate ABC transporter, permease protein
2447	 40.15	0	2528664..2529572	-	302	46908671	-	LMOf2365_2472	-	phosphate ABC transporter, phosphate-binding protein
2448	 38.68	0	2529828..2531603	-	591	46908672	-	LMOf2365_2473	-	histidine kinase
2449	 36.24	0	2531603..2532325	-	240	46908673	phoP	LMOf2365_2474	-	DNA-binding response regulator PhoP
2450	 38.01	0	2532464..2533639	-	391	46908674	-	LMOf2365_2475	-	hypothetical protein
2451	 36.02	0	2533667..2535115	-	482	46908675	cls-2	LMOf2365_2476	-	cardiolipin synthetase
2452	 38.29	0	2535239..2536549	-	436	46908676	-	LMOf2365_2477	-	M48 family peptidase
2453	 37.23	0	2536669..2537874	-	401	46908677	-	LMOf2365_2478	-	NLP/P60 family protein
2454	 37.18	0	2537950..2538834	-	294	46908678	ftsX	LMOf2365_2479	-	cell division ABC transporter, permease protein FtsX
2455	 39.01	0	2538824..2539510	-	228	46908679	ftsE	LMOf2365_2480	-	cell division ATP-binding protein FtsE
2456	 38.54	0	2540017..2540880	-	287	46908680	-	LMOf2365_2481	-	YitT family protein
2457	 38.29	0	2540886..2541987	-	366	46908681	prfB	LMOf2365_2482	-	peptide chain release factor 2
2458	 38.23	0	2542072..2544585	-	837	46908682	secA	LMOf2365_2483	-	preprotein translocase subunit SecA
2459	 34.40	0	2544816..2545379	-	187	46908683	yfiA	LMOf2365_2484	-	ribosomal subunit interface protein
2460	 34.70	0	2545574..2546230	-	218	46908684	-	LMOf2365_2485	-	comFC family protein
2461	 39.24	0	2546223..2547542	-	439	46908685	-	LMOf2365_2486	-	helicase family protein
2462	 38.85	0	2547738..2548589	-	283	46908686	-	LMOf2365_2487	-	DegV family protein
2463	 37.99	0	2548610..2549296	-	228	46908687	degU	LMOf2365_2488	-	DNA-binding response regulator DegU
2464	 36.64	0	2549681..2550316	+	211	46908688	-	LMOf2365_2489	-	hypothetical protein
2465	 33.52	-1	2550318..2550863	+	181	46908689	-	LMOf2365_2490	-	acetyltransferase
2466	 36.36	0	2551039..2552097	+	352	46908690	-	LMOf2365_2491	-	transcriptional regulator, putative
2467	 35.23	0	2552135..2553187	-	350	46908691	-	LMOf2365_2492	-	glycosyl transferase, group 4 family protein
2468	 38.04	0	2553195..2554319	-	374	46908692	-	LMOf2365_2493	-	N-acylamino acid racemase
2469	 38.23	0	2554320..2555054	-	244	46908693	-	LMOf2365_2494	-	teichoic acid biosynthesis protein A
2470	 34.05	-1	2555181..2556014	-	277	46908694	-	LMOf2365_2495	-	LysM domain-containing protein
2471	 34.15	-1	2556405..2556770	-	121	46908695	ssb-2	LMOf2365_2496	-	single-strand binding protein
2472	 37.70	0	2557021..2557455	-	144	46908696	fabZ	LMOf2365_2497	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
2473	 36.85	0	2557478..2558473	-	331	46908697	-	LMOf2365_2498	-	mbl protein
2474	 38.44	0	2558636..2559928	-	430	46908698	murA-1	LMOf2365_2499	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2475	 25.74	-2	2560110..2560346	-	78	46908699	-	LMOf2365_2500	-	hypothetical protein
2476	 41.23	0	2560468..2560872	-	134	46908700	atpC	LMOf2365_2501	-	F0F1 ATP synthase subunit epsilon
2477	 40.65	0	2560894..2562315	-	473	46908701	atpD-2	LMOf2365_2502	-	F0F1 ATP synthase subunit beta
2478	 38.72	0	2562376..2563248	-	290	46908702	atpG	LMOf2365_2503	-	F0F1 ATP synthase subunit gamma
2479	 41.32	0	2563286..2564800	-	504	46908703	atpA-2	LMOf2365_2504	-	F0F1 ATP synthase subunit alpha
2480	 36.48	0	2564827..2565366	-	179	46908704	atpH	LMOf2365_2505	-	F0F1 ATP synthase subunit delta
2481	 38.01	0	2565363..2565875	-	170	46908705	atpF	LMOf2365_2506	-	F0F1 ATP synthase subunit B
2482	 43.38	+1	2565963..2566181	-	72	46908706	atpE	LMOf2365_2507	-	F0F1 ATP synthase subunit C
2483	 37.24	0	2566253..2566969	-	238	46908707	atpB	LMOf2365_2508	-	F0F1 ATP synthase subunit A
2484	 36.34	0	2566976..2567374	-	132	46908708	atpI	LMOf2365_2509	-	ATP synthase protein I
2485	 40.53	0	2568205..2569344	-	379	46908709	-	LMOf2365_2510	-	UDP-N-acetylglucosamine 2-epimerase
2486	 40.48	0	2569462..2570091	-	209	46908710	upp	LMOf2365_2511	-	uracil phosphoribosyltransferase
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.