IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2352	 36.59	0	2430915..2431190	-	91	46908576	-	LMOf2365_2376	-	hypothetical protein
2353	 40.53	0	2431187..2432575	-	462	46908577	-	LMOf2365_2377	-	Ser/Thr protein phosphatase family protein
2354	 43.82	+1	2432702..2433550	+	282	46908578	-	LMOf2365_2378	-	hypothetical protein
2355	 39.07	0	2433551..2433916	+	121	46908579	-	LMOf2365_2379	-	hypothetical protein
2356	 40.57	0	2433949..2434791	-	280	46908580	-	LMOf2365_2380	-	hypothetical protein
2357	 33.02	-1	2434933..2435247	-	104	46908581	-	LMOf2365_2381	-	hypothetical protein
2358	 41.79	+1	2435382..2436776	-	464	46908582	sufB	LMOf2365_2382	-	FeS assembly protein SufB
2359	 41.67	+1	2436799..2437242	-	147	46908583	-	LMOf2365_2383	-	NifU family protein
2360	 42.05	+1	2437239..2438465	-	408	46908584	-	LMOf2365_2384	-	SufD subfamily cysteine desulfurase
2361	 40.93	0	2438466..2439755	-	429	46908585	sufD	LMOf2365_2385	-	FeS assembly protein SufD
2362	 40.20	0	2439786..2440571	-	261	46908586	sufC	LMOf2365_2386	-	SUF system FeS assembly ATPase
2363	 35.00	0	2440911..2441987	+	358	46908587	-	LMOf2365_2387	-	putative lipoprotein
2364	 35.74	0	2442029..2442859	-	276	46908588	-	LMOf2365_2388	-	ABC transporter, substrate-binding protein
2365	 39.70	0	2442924..2443598	-	224	46908589	-	LMOf2365_2389	-	ABC transporter, permease protein
2366	 40.37	0	2443595..2444617	-	340	46908590	-	LMOf2365_2390	-	ABC transporter, ATP-binding protein
2367	 27.51	-2	2444934..2445122	-	62	46908591	-	LMOf2365_2391	-	hypothetical protein
2368	 38.15	0	2445201..2446343	-	380	46908592	-	LMOf2365_2392	-	sensor histidine kinase
2369	 38.07	0	2446333..2447028	-	231	46908593	-	LMOf2365_2393	-	DNA-binding response regulator
2370	 38.24	0	2447103..2447978	-	291	46908594	-	LMOf2365_2394	-	cation efflux family protein
2371	 42.81	+1	2448170..2448454	-	94	46908595	-	LMOf2365_2395	-	thioredoxin, putative
2372	 36.51	0	2448539..2448916	-	125	46908596	gcvH	LMOf2365_2396	-	glycine cleavage system H protein
2373	 37.57	0	2448957..2449310	-	117	46908597	-	LMOf2365_2397	-	ArsC family protein
2374	 39.63	0	2449467..2450642	-	391	46908598	-	LMOf2365_2398	-	cell cycle protein FtsW
2375	 36.75	0	2450718..2451887	-	389	46908599	-	LMOf2365_2399	-	cell cycle protein FtsW
2376	 41.29	0	2452029..2452820	-	263	46908600	-	LMOf2365_2400	-	iron compound ABC transporter, ATP-binding protein
2377	 45.10	+2	2452817..2453827	-	336	46908601	-	LMOf2365_2401	-	iron compound ABC transporter, permease protein
2378	 40.95	0	2453827..2454798	-	323	46908602	-	LMOf2365_2402	-	iron compound ABC transporter, iron compound-binding protein, putative
2379	 33.33	-1	2454954..2455118	+	54	46908603	-	LMOf2365_2403	-	hypothetical protein
2380	 39.92	0	2455251..2456009	+	252	46908604	estA	LMOf2365_2404	-	tributyrin esterase
2381	 39.60	0	2456049..2457452	-	467	46908605	gadG	LMOf2365_2405	-	glutamate decarboxylase gamma
2382	 32.36	-1	2457579..2457887	+	102	46908606	-	LMOf2365_2406	-	hypothetical protein
2383	 35.67	0	2457949..2458803	-	284	46908607	licT	LMOf2365_2407	-	transcription antiterminator LicT
2384	 31.33	-1	2458915..2459064	+	49	46908608	-	LMOf2365_2408	-	hypothetical protein
2385	 42.09	+1	2459071..2459481	+	136	46908609	-	LMOf2365_2409	-	hypothetical protein
2386	 38.01	0	2459504..2460016	-	170	46908610	-	LMOf2365_2410	-	hypothetical protein
2387	 33.63	-1	2460140..2460481	+	113	46908611	-	LMOf2365_2411	-	hypothetical protein
2388	 34.64	0	2460513..2460896	-	127	46908612	-	LMOf2365_2412	-	hypothetical protein
2389	 39.35	0	2460952..2461848	-	298	46908613	-	LMOf2365_2413	-	hypothetical protein
2390	 37.37	0	2461893..2462462	-	189	46908614	-	LMOf2365_2414	-	hypothetical protein
2391	 31.19	-1	2462638..2463057	-	139	46908615	-	LMOf2365_2415	-	hypothetical protein
2392	 34.46	0	2463980..2465041	-	353	46908616	-	LMOf2365_2416	-	leucine-rich repeat-containing protein
2393	 41.50	0	2465092..2469024	-	1310	46908617	-	LMOf2365_2417	-	glycosy hydrolase family protein
2394	 35.87	0	2469039..2469983	-	314	46908618	-	LMOf2365_2418	-	leucine-rich repeat-containing protein
2395	 39.26	0	2470044..2473319	-	1091	46908619	-	LMOf2365_2419	-	glycosy hydrolase family protein
2396	 30.91	-1	2473702..2474610	+	302	46908620	-	LMOf2365_2420	-	transcriptional activator, putative
2397	 38.92	0	2474666..2475130	-	154	46908621	smpB	LMOf2365_2421	-	SsrA-binding protein
2398	 40.90	0	2475146..2477497	-	783	46908622	-	LMOf2365_2422	-	ribonuclease R, putative
2399	 38.96	0	2477561..2478307	-	248	46908623	est-1	LMOf2365_2423	-	carboxylesterase
2400	 39.32	0	2478605..2478838	-	77	46908624	secG	LMOf2365_2424	-	preprotein translocase subunit SecG
2401	 40.05	0	2478928..2479671	-	247	46908625	est-2	LMOf2365_2425	-	carboxylesterase
2402	 37.22	0	2479854..2480573	-	239	46908626	-	LMOf2365_2426	-	hypothetical protein
2403	 38.69	0	2480706..2480873	-	55	46908627	-	LMOf2365_2427	-	hypothetical protein
2404	 40.76	0	2480982..2482274	-	430	46908628	eno	LMOf2365_2428	-	enolase
2405	 40.38	0	2482410..2483942	-	510	46908629	gpmA	LMOf2365_2429	-	phosphoglyceromutase
2406	 41.93	+1	2483944..2484699	-	251	46908630	tpiA-2	LMOf2365_2430	-	triosephosphate isomerase
2407	 39.55	0	2484745..2485935	-	396	46908631	pgk	LMOf2365_2431	-	phosphoglycerate kinase
2408	 39.07	0	2486070..2487080	-	336	46908632	gap	LMOf2365_2432	-	glyceraldehyde-3-phosphate dehydrogenase
2409	 42.50	+1	2487113..2488159	-	348	46908633	-	LMOf2365_2433	-	transcriptional regulator, putative
2410	 38.91	0	2488600..2489943	-	447	46908634	-	LMOf2365_2434	-	RNA polymerase factor sigma-54
2411	 38.19	0	2490103..2491029	-	308	46908635	-	LMOf2365_2435	-	renal dipeptidase family protein
2412	 34.81	0	2493351..2493959	-	202	46908636	-	LMOf2365_2437	-	TetR family transcriptional regulator
2413	 36.73	0	2493976..2494476	-	166	46908637	-	LMOf2365_2438	-	hypothetical protein
2414	 35.71	0	2494607..2494942	+	111	46908638	-	LMOf2365_2439	-	hypothetical protein
2415	 39.32	0	2495190..2496626	-	478	46908639	-	LMOf2365_2440	-	chitin-binding protein/carbohydrate-binding protein
2416	 39.36	0	2496783..2497379	+	198	46908640	clpP	LMOf2365_2441	-	ATP-dependent Clp protease proteolytic subunit
2417	 38.15	0	2497428..2498819	-	463	46908641	-	LMOf2365_2442	-	amino acid permease family protein
2418	 32.90	-1	2499036..2500202	+	388	46908642	-	LMOf2365_2443	-	leucine-rich repeat-containing protein
2419	 40.12	0	2500255..2501271	-	338	46908643	-	LMOf2365_2444	-	NADPH dehydrogenase NamA
2420	 40.43	0	2501298..2502269	-	323	46908644	-	LMOf2365_2445	-	hypothetical protein
2421	 40.35	0	2502277..2503245	-	322	46908645	-	LMOf2365_2446	-	hypothetical protein
2422	 39.27	0	2503247..2504122	-	291	46908646	-	LMOf2365_2447	-	hypothetical protein
2423	 39.69	0	2504230..2505960	-	576	46908647	-	LMOf2365_2448	-	phosphoglucomutase/phosphomannomutase family protein
2424	 39.94	0	2506002..2507045	-	347	46908648	mro	LMOf2365_2449	-	aldose 1-epimerase
2425	 39.13	0	2507080..2508063	-	327	46908649	galE	LMOf2365_2450	-	UDP-glucose 4-epimerase
2426	 41.67	+1	2508183..2509142	-	319	46908650	trxB	LMOf2365_2451	-	thioredoxin-disulfide reductase
2427	 36.38	0	2509221..2510696	-	491	46908651	-	LMOf2365_2452	-	TPR domain-containing protein
2428	 43.17	+1	2510781..2511278	-	165	46908652	-	LMOf2365_2453	-	hexapeptide transferase family protein
2429	 37.61	0	2511282..2511935	-	217	46908653	-	LMOf2365_2454	-	pyrophosphatase PpaX
2430	 37.17	0	2511979..2512812	-	277	46908654	lgt	LMOf2365_2455	-	prolipoprotein diacylglyceryl transferase
2431	 39.40	0	2512898..2513836	-	312	46908655	hprK	LMOf2365_2456	-	HPr kinase/phosphorylase
2432	 33.05	-1	2514023..2514376	-	117	46908656	-	LMOf2365_2457	-	hypothetical protein
2433	 37.81	0	2514385..2514585	-	66	46908657	-	LMOf2365_2458	-	PspC domain-containing protein, truncated
2434	 38.78	0	2514609..2515820	-	403	46908658	-	LMOf2365_2459	-	PspC domain-containing protein
2435	 34.76	0	2515887..2517149	-	420	46908659	-	LMOf2365_2460	-	hypothetical protein
2436	 38.77	0	2517358..2520228	-	956	46908660	uvrA	LMOf2365_2461	-	excinuclease ABC, A subunit
2437	 40.01	0	2520236..2522212	-	658	46908661	uvrB	LMOf2365_2462	-	excinuclease ABC subunit B
2438	 35.42	0	2522463..2522702	-	79	46908662	-	LMOf2365_2463	-	hypothetical protein
2439	 36.11	0	2522723..2523370	-	215	46908663	-	LMOf2365_2464	-	HD domain-containing protein
2440	 34.63	0	2523392..2523778	-	128	46908664	-	LMOf2365_2465	-	hypothetical protein
2441	 38.24	0	2523884..2524189	-	101	46908665	-	LMOf2365_2466	-	ArsR family transcriptional regulator
2442	 37.88	0	2524457..2525116	-	219	46908666	-	LMOf2365_2467	-	phosphate transport system protein PhoU
2443	 39.49	0	2525129..2525908	-	259	46908667	-	LMOf2365_2468	-	phosphate ABC transporter, ATP-binding protein
2444	 38.48	0	2525923..2526738	-	271	46908668	-	LMOf2365_2469	-	phosphate ABC transporter, ATP-binding protein
2445	 42.26	+1	2526766..2527650	-	294	46908669	-	LMOf2365_2470	-	phosphate ABC transporter, permease protein
2446	 40.38	0	2527647..2528597	-	316	46908670	-	LMOf2365_2471	-	phosphate ABC transporter, permease protein
2447	 40.15	0	2528664..2529572	-	302	46908671	-	LMOf2365_2472	-	phosphate ABC transporter, phosphate-binding protein
2448	 38.68	0	2529828..2531603	-	591	46908672	-	LMOf2365_2473	-	histidine kinase
2449	 36.24	0	2531603..2532325	-	240	46908673	phoP	LMOf2365_2474	-	DNA-binding response regulator PhoP
2450	 38.01	0	2532464..2533639	-	391	46908674	-	LMOf2365_2475	-	hypothetical protein
2451	 36.02	0	2533667..2535115	-	482	46908675	cls-2	LMOf2365_2476	-	cardiolipin synthetase
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.