IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2293	 41.38	0	2368582..2369289	-	235	46908517	-	LMOf2365_2317	-	amino acid ABC transporter, permease protein
2294	 39.19	0	2369303..2370019	-	238	46908518	-	LMOf2365_2318	-	amino acid ABC transporter, permease protein
2295	 36.17	0	2370041..2370850	-	269	46908519	-	LMOf2365_2319	-	amino acid ABC transporter, amino acid-binding protein
2296	 43.39	+1	2370867..2371403	-	178	46908520	-	LMOf2365_2320	-	acetyltransferase
2297	 39.93	0	2371419..2371964	-	181	46908521	-	LMOf2365_2321	-	FMN reductase, NADPH-dependent
2298	 39.11	0	2372207..2373106	+	299	46908522	-	LMOf2365_2322	-	LysR family transcriptional regulator
2299	 38.25	0	2373132..2375084	-	650	46908523	-	LMOf2365_2323	-	sodium/hydrogen exchanger family protein
2300	 42.34	+1	2375208..2376806	-	532	46908524	-	LMOf2365_2324	-	hypothetical protein
2301	 39.69	0	2376810..2378051	-	413	46908525	-	LMOf2365_2325	-	transporter, putative
2302	 32.84	-1	2378252..2378863	-	203	46908526	-	LMOf2365_2326	-	hypothetical protein
2303	 32.96	-1	2379053..2379583	-	176	46908527	-	LMOf2365_2327	-	hypothetical protein
2304	 38.25	0	2379599..2380330	-	243	46908528	-	LMOf2365_2328	-	glucosamine-6-phosphate isomerase, putative
2305	 38.30	0	2380374..2381219	-	281	46908529	-	LMOf2365_2329	-	Cof-like hydrolase
2306	 39.80	0	2381339..2384122	-	927	46908530	-	LMOf2365_2330	-	hypothetical protein
2307	 38.00	0	2384156..2384626	-	156	46908531	-	LMOf2365_2331	-	Rrf2 family protein
2308	 29.91	-2	2384738..2384854	+	38	46908532	-	LMOf2365_2332	-	hypothetical protein
2309	 41.08	0	2385019..2386542	+	507	46908533	-	LMOf2365_2333	-	amino acid antiporter
2310	 42.58	+1	2386555..2387949	+	464	46908534	gadB	LMOf2365_2334	-	glutamate decarboxylase beta
2311	 36.77	0	2387958..2389472	-	504	46908535	-	LMOf2365_2335	-	RofA family transcriptional regulator
2312	 35.48	0	2396512..2396604	-	30	46908536	-	LMOf2365_2336	-	hypothetical protein
2313	 42.03	+1	2396689..2397447	-	252	46908537	-	LMOf2365_2337	-	DeoR family transcriptional regulator
2314	 39.25	0	2397552..2398904	-	450	46908538	pgi	LMOf2365_2338	-	glucose-6-phosphate isomerase
2315	 40.20	0	2399006..2399413	-	135	46908539	-	LMOf2365_2339	-	MutT/nudix family protein
2316	 34.75	0	2399561..2399914	-	117	46908540	-	LMOf2365_2340	-	general stress protein 13
2317	 40.27	0	2400068..2401234	+	388	46908541	-	LMOf2365_2341	-	aminotransferase, class I
2318	 36.96	0	2401373..2402476	+	367	46908542	-	LMOf2365_2342	-	ABC transporter, permease protein
2319	 41.26	0	2402476..2403156	+	226	46908543	-	LMOf2365_2343	-	ABC transporter, ATP-binding protein
2320	 38.93	0	2403140..2403514	-	124	46908544	-	LMOf2365_2344	-	PTS system, cellobiose-specific, IIB component
2321	 40.53	0	2403759..2405120	+	453	46908545	-	LMOf2365_2345	-	aspartate kinase
2322	 35.37	0	2405165..2405557	-	130	46908546	-	LMOf2365_2346	-	hypothetical protein
2323	 26.70	-2	2405671..2407041	-	456	46908547	-	LMOf2365_2347	-	hypothetical protein
2324	 25.81	-2	2407223..2407501	+	92	46908548	-	LMOf2365_2348	-	hypothetical protein
2325	 43.08	+1	2407526..2408110	-	194	46908549	-	LMOf2365_2349	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2326	 42.33	+1	2408342..2409553	+	403	46908550	-	LMOf2365_2350	-	major facilitator family transporter
2327	 39.81	0	2409898..2412306	+	802	46908551	-	LMOf2365_2351	-	monovalent cation/H+ antiporter subunit A
2328	 41.13	0	2412293..2412715	+	140	46908552	-	LMOf2365_2352	-	putative monovalent cation/H+ antiporter subunit B
2329	 42.24	+1	2412715..2413062	+	115	46908553	-	LMOf2365_2353	-	putative monovalent cation/H+ antiporter subunit C
2330	 38.98	0	2413052..2414539	+	495	46908554	-	LMOf2365_2354	-	putative monovalent cation/H+ antiporter subunit D
2331	 38.54	0	2414546..2415025	+	159	46908555	-	LMOf2365_2355	-	putative monovalent cation/H+ antiporter subunit E
2332	 36.11	0	2415022..2415309	+	95	46908556	-	LMOf2365_2356	-	putative monovalent cation/H+ antiporter subunit F
2333	 40.57	0	2415293..2415886	+	197	46908557	-	LMOf2365_2357	-	putative monovalent cation/H+ antiporter subunit G
2334	 37.90	0	2415931..2416302	-	123	46908558	-	LMOf2365_2358	-	thioesterase family protein
2335	 41.14	0	2416430..2416903	+	157	46908559	-	LMOf2365_2359	-	hypothetical protein
2336	 37.67	0	2417015..2418235	+	406	46908560	-	LMOf2365_2360	-	hypothetical protein
2337	 27.39	-2	2418262..2418867	-	201	46908561	-	LMOf2365_2361	-	hypothetical protein
2338	 37.12	0	2419029..2419847	-	272	46908562	-	LMOf2365_2362	-	hypothetical protein
2339	 40.18	0	2419932..2421143	-	403	46908563	-	LMOf2365_2363	-	pyridine nucleotide-disulfide oxidoreductase family protein
2340	 41.16	0	2421593..2422588	+	331	46908564	-	LMOf2365_2364	-	pyridine nucleotide-disulfide oxidoreductase family protein
2341	 42.70	+1	2422676..2423305	+	209	46908565	-	LMOf2365_2365	-	hypothetical protein
2342	 41.03	0	2423351..2423584	-	77	46908566	-	LMOf2365_2366	-	hypothetical protein
2343	 43.12	+1	2423606..2423932	-	108	46908567	-	LMOf2365_2367	-	hypothetical protein
2344	 47.47	+2	2424173..2424370	-	65	46908568	-	LMOf2365_2368	-	hypothetical protein
2345	 35.83	0	2424411..2424530	-	39	46908569	-	LMOf2365_2369	-	hypothetical protein
2346	 36.73	0	2424856..2427243	+	795	46908570	-	LMOf2365_2370	-	cell wall surface anchor family protein
2347	 37.13	0	2427416..2427652	+	78	46908571	-	LMOf2365_2371	-	NifU family protein
2348	 42.32	+1	2427765..2428265	+	166	46908572	-	LMOf2365_2372	-	hypothetical protein
2349	 40.73	0	2428290..2429600	-	436	46908573	-	LMOf2365_2373	-	CBS domain-containing protein
2350	 40.77	0	2429636..2430079	-	147	46908574	-	LMOf2365_2374	-	acetyltransferase
2351	 41.02	0	2430128..2430895	-	255	46908575	-	LMOf2365_2375	-	HAD family hydrolase
2352	 36.59	0	2430915..2431190	-	91	46908576	-	LMOf2365_2376	-	hypothetical protein
2353	 40.53	0	2431187..2432575	-	462	46908577	-	LMOf2365_2377	-	Ser/Thr protein phosphatase family protein
2354	 43.82	+1	2432702..2433550	+	282	46908578	-	LMOf2365_2378	-	hypothetical protein
2355	 39.07	0	2433551..2433916	+	121	46908579	-	LMOf2365_2379	-	hypothetical protein
2356	 40.57	0	2433949..2434791	-	280	46908580	-	LMOf2365_2380	-	hypothetical protein
2357	 33.02	-1	2434933..2435247	-	104	46908581	-	LMOf2365_2381	-	hypothetical protein
2358	 41.79	+1	2435382..2436776	-	464	46908582	sufB	LMOf2365_2382	-	FeS assembly protein SufB
2359	 41.67	+1	2436799..2437242	-	147	46908583	-	LMOf2365_2383	-	NifU family protein
2360	 42.05	+1	2437239..2438465	-	408	46908584	-	LMOf2365_2384	-	SufD subfamily cysteine desulfurase
2361	 40.93	0	2438466..2439755	-	429	46908585	sufD	LMOf2365_2385	-	FeS assembly protein SufD
2362	 40.20	0	2439786..2440571	-	261	46908586	sufC	LMOf2365_2386	-	SUF system FeS assembly ATPase
2363	 35.00	0	2440911..2441987	+	358	46908587	-	LMOf2365_2387	-	putative lipoprotein
2364	 35.74	0	2442029..2442859	-	276	46908588	-	LMOf2365_2388	-	ABC transporter, substrate-binding protein
2365	 39.70	0	2442924..2443598	-	224	46908589	-	LMOf2365_2389	-	ABC transporter, permease protein
2366	 40.37	0	2443595..2444617	-	340	46908590	-	LMOf2365_2390	-	ABC transporter, ATP-binding protein
2367	 27.51	-2	2444934..2445122	-	62	46908591	-	LMOf2365_2391	-	hypothetical protein
2368	 38.15	0	2445201..2446343	-	380	46908592	-	LMOf2365_2392	-	sensor histidine kinase
2369	 38.07	0	2446333..2447028	-	231	46908593	-	LMOf2365_2393	-	DNA-binding response regulator
2370	 38.24	0	2447103..2447978	-	291	46908594	-	LMOf2365_2394	-	cation efflux family protein
2371	 42.81	+1	2448170..2448454	-	94	46908595	-	LMOf2365_2395	-	thioredoxin, putative
2372	 36.51	0	2448539..2448916	-	125	46908596	gcvH	LMOf2365_2396	-	glycine cleavage system H protein
2373	 37.57	0	2448957..2449310	-	117	46908597	-	LMOf2365_2397	-	ArsC family protein
2374	 39.63	0	2449467..2450642	-	391	46908598	-	LMOf2365_2398	-	cell cycle protein FtsW
2375	 36.75	0	2450718..2451887	-	389	46908599	-	LMOf2365_2399	-	cell cycle protein FtsW
2376	 41.29	0	2452029..2452820	-	263	46908600	-	LMOf2365_2400	-	iron compound ABC transporter, ATP-binding protein
2377	 45.10	+2	2452817..2453827	-	336	46908601	-	LMOf2365_2401	-	iron compound ABC transporter, permease protein
2378	 40.95	0	2453827..2454798	-	323	46908602	-	LMOf2365_2402	-	iron compound ABC transporter, iron compound-binding protein, putative
2379	 33.33	-1	2454954..2455118	+	54	46908603	-	LMOf2365_2403	-	hypothetical protein
2380	 39.92	0	2455251..2456009	+	252	46908604	estA	LMOf2365_2404	-	tributyrin esterase
2381	 39.60	0	2456049..2457452	-	467	46908605	gadG	LMOf2365_2405	-	glutamate decarboxylase gamma
2382	 32.36	-1	2457579..2457887	+	102	46908606	-	LMOf2365_2406	-	hypothetical protein
2383	 35.67	0	2457949..2458803	-	284	46908607	licT	LMOf2365_2407	-	transcription antiterminator LicT
2384	 31.33	-1	2458915..2459064	+	49	46908608	-	LMOf2365_2408	-	hypothetical protein
2385	 42.09	+1	2459071..2459481	+	136	46908609	-	LMOf2365_2409	-	hypothetical protein
2386	 38.01	0	2459504..2460016	-	170	46908610	-	LMOf2365_2410	-	hypothetical protein
2387	 33.63	-1	2460140..2460481	+	113	46908611	-	LMOf2365_2411	-	hypothetical protein
2388	 34.64	0	2460513..2460896	-	127	46908612	-	LMOf2365_2412	-	hypothetical protein
2389	 39.35	0	2460952..2461848	-	298	46908613	-	LMOf2365_2413	-	hypothetical protein
2390	 37.37	0	2461893..2462462	-	189	46908614	-	LMOf2365_2414	-	hypothetical protein
2391	 31.19	-1	2462638..2463057	-	139	46908615	-	LMOf2365_2415	-	hypothetical protein
2392	 34.46	0	2463980..2465041	-	353	46908616	-	LMOf2365_2416	-	leucine-rich repeat-containing protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.