IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2269	 30.71	-2	2342392..2343267	-	291	46908493	-	LMOf2365_2293	-	acetyltransferase
2270	 38.19	0	2343347..2343655	-	102	46908494	-	LMOf2365_2294	-	hypothetical protein
2271	 36.12	0	2343720..2344472	-	250	46908495	-	LMOf2365_2295	-	hypothetical protein
2272	 38.87	0	2344624..2345436	+	270	46908496	-	LMOf2365_2296	-	HAD family hydrolase
2273	 34.55	0	2345514..2346416	-	300	46908497	-	LMOf2365_2297	-	hypothetical protein
2274	 32.23	-1	2346500..2346862	-	120	46908498	-	LMOf2365_2298	-	hypothetical protein
2275	 35.34	0	2346882..2347730	-	282	46908499	-	LMOf2365_2299	-	fumarylacetoacetate hydrolase family protein
2276	 34.12	-1	2347731..2351438	-	1235	46908500	addA	LMOf2365_2300	-	ATP-dependent nuclease, subunit A
2277	 34.43	0	2351440..2354913	-	1157	46908501	addB	LMOf2365_2301	-	ATP-dependent nuclease, subunit B
2278	 31.93	-1	2355063..2355419	-	118	46908502	yhzC	LMOf2365_2302	-	YhzC protein
2279	 34.15	-1	2355550..2356158	+	202	46908503	-	LMOf2365_2303	-	transcription regulator
2280	 33.33	-1	2356213..2356569	-	118	46908504	-	LMOf2365_2304	-	DNA-binding protein
2281	 39.55	0	2356666..2358564	-	632	46908505	-	LMOf2365_2305	-	PTS system, fructose-specific, IIABC component
2282	 36.69	0	2358566..2359489	-	307	46908506	fruB	LMOf2365_2306	-	1-phosphofructokinase
2283	 35.06	0	2359486..2360238	-	250	46908507	-	LMOf2365_2307	-	DeoR family transcriptional regulator
2284	 35.07	0	2360456..2361781	+	441	46908508	-	LMOf2365_2308	-	aminopeptidase C
2285	 39.19	0	2361778..2362221	-	147	46908509	-	LMOf2365_2309	-	hypothetical protein
2286	 40.57	0	2362302..2363213	-	303	46908510	-	LMOf2365_2310	-	indigoidine synthase A-like protein
2287	 40.48	0	2363210..2364328	-	372	46908511	-	LMOf2365_2311	-	carbohydrate kinase
2288	 40.88	0	2364461..2365162	-	233	46908512	rsuA	LMOf2365_2312	-	ribosomal small subunit pseudouridine synthase A
2289	 42.33	+1	2365236..2366558	-	440	46908513	-	LMOf2365_2313	-	NtaA/SnaA/SoxA family monooxygenase
2290	 38.20	0	2366555..2366821	-	88	46908514	-	LMOf2365_2314	-	glutaredoxin family protein
2291	 41.67	+1	2366814..2367809	-	331	46908515	-	LMOf2365_2315	-	luciferase family protein
2292	 40.90	0	2367806..2368585	-	259	46908516	-	LMOf2365_2316	-	amino acid ABC transporter, ATP-binding protein
2293	 41.38	0	2368582..2369289	-	235	46908517	-	LMOf2365_2317	-	amino acid ABC transporter, permease protein
2294	 39.19	0	2369303..2370019	-	238	46908518	-	LMOf2365_2318	-	amino acid ABC transporter, permease protein
2295	 36.17	0	2370041..2370850	-	269	46908519	-	LMOf2365_2319	-	amino acid ABC transporter, amino acid-binding protein
2296	 43.39	+1	2370867..2371403	-	178	46908520	-	LMOf2365_2320	-	acetyltransferase
2297	 39.93	0	2371419..2371964	-	181	46908521	-	LMOf2365_2321	-	FMN reductase, NADPH-dependent
2298	 39.11	0	2372207..2373106	+	299	46908522	-	LMOf2365_2322	-	LysR family transcriptional regulator
2299	 38.25	0	2373132..2375084	-	650	46908523	-	LMOf2365_2323	-	sodium/hydrogen exchanger family protein
2300	 42.34	+1	2375208..2376806	-	532	46908524	-	LMOf2365_2324	-	hypothetical protein
2301	 39.69	0	2376810..2378051	-	413	46908525	-	LMOf2365_2325	-	transporter, putative
2302	 32.84	-1	2378252..2378863	-	203	46908526	-	LMOf2365_2326	-	hypothetical protein
2303	 32.96	-1	2379053..2379583	-	176	46908527	-	LMOf2365_2327	-	hypothetical protein
2304	 38.25	0	2379599..2380330	-	243	46908528	-	LMOf2365_2328	-	glucosamine-6-phosphate isomerase, putative
2305	 38.30	0	2380374..2381219	-	281	46908529	-	LMOf2365_2329	-	Cof-like hydrolase
2306	 39.80	0	2381339..2384122	-	927	46908530	-	LMOf2365_2330	-	hypothetical protein
2307	 38.00	0	2384156..2384626	-	156	46908531	-	LMOf2365_2331	-	Rrf2 family protein
2308	 29.91	-2	2384738..2384854	+	38	46908532	-	LMOf2365_2332	-	hypothetical protein
2309	 41.08	0	2385019..2386542	+	507	46908533	-	LMOf2365_2333	-	amino acid antiporter
2310	 42.58	+1	2386555..2387949	+	464	46908534	gadB	LMOf2365_2334	-	glutamate decarboxylase beta
2311	 36.77	0	2387958..2389472	-	504	46908535	-	LMOf2365_2335	-	RofA family transcriptional regulator
2312	 35.48	0	2396512..2396604	-	30	46908536	-	LMOf2365_2336	-	hypothetical protein
2313	 42.03	+1	2396689..2397447	-	252	46908537	-	LMOf2365_2337	-	DeoR family transcriptional regulator
2314	 39.25	0	2397552..2398904	-	450	46908538	pgi	LMOf2365_2338	-	glucose-6-phosphate isomerase
2315	 40.20	0	2399006..2399413	-	135	46908539	-	LMOf2365_2339	-	MutT/nudix family protein
2316	 34.75	0	2399561..2399914	-	117	46908540	-	LMOf2365_2340	-	general stress protein 13
2317	 40.27	0	2400068..2401234	+	388	46908541	-	LMOf2365_2341	-	aminotransferase, class I
2318	 36.96	0	2401373..2402476	+	367	46908542	-	LMOf2365_2342	-	ABC transporter, permease protein
2319	 41.26	0	2402476..2403156	+	226	46908543	-	LMOf2365_2343	-	ABC transporter, ATP-binding protein
2320	 38.93	0	2403140..2403514	-	124	46908544	-	LMOf2365_2344	-	PTS system, cellobiose-specific, IIB component
2321	 40.53	0	2403759..2405120	+	453	46908545	-	LMOf2365_2345	-	aspartate kinase
2322	 35.37	0	2405165..2405557	-	130	46908546	-	LMOf2365_2346	-	hypothetical protein
2323	 26.70	-2	2405671..2407041	-	456	46908547	-	LMOf2365_2347	-	hypothetical protein
2324	 25.81	-2	2407223..2407501	+	92	46908548	-	LMOf2365_2348	-	hypothetical protein
2325	 43.08	+1	2407526..2408110	-	194	46908549	-	LMOf2365_2349	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2326	 42.33	+1	2408342..2409553	+	403	46908550	-	LMOf2365_2350	-	major facilitator family transporter
2327	 39.81	0	2409898..2412306	+	802	46908551	-	LMOf2365_2351	-	monovalent cation/H+ antiporter subunit A
2328	 41.13	0	2412293..2412715	+	140	46908552	-	LMOf2365_2352	-	putative monovalent cation/H+ antiporter subunit B
2329	 42.24	+1	2412715..2413062	+	115	46908553	-	LMOf2365_2353	-	putative monovalent cation/H+ antiporter subunit C
2330	 38.98	0	2413052..2414539	+	495	46908554	-	LMOf2365_2354	-	putative monovalent cation/H+ antiporter subunit D
2331	 38.54	0	2414546..2415025	+	159	46908555	-	LMOf2365_2355	-	putative monovalent cation/H+ antiporter subunit E
2332	 36.11	0	2415022..2415309	+	95	46908556	-	LMOf2365_2356	-	putative monovalent cation/H+ antiporter subunit F
2333	 40.57	0	2415293..2415886	+	197	46908557	-	LMOf2365_2357	-	putative monovalent cation/H+ antiporter subunit G
2334	 37.90	0	2415931..2416302	-	123	46908558	-	LMOf2365_2358	-	thioesterase family protein
2335	 41.14	0	2416430..2416903	+	157	46908559	-	LMOf2365_2359	-	hypothetical protein
2336	 37.67	0	2417015..2418235	+	406	46908560	-	LMOf2365_2360	-	hypothetical protein
2337	 27.39	-2	2418262..2418867	-	201	46908561	-	LMOf2365_2361	-	hypothetical protein
2338	 37.12	0	2419029..2419847	-	272	46908562	-	LMOf2365_2362	-	hypothetical protein
2339	 40.18	0	2419932..2421143	-	403	46908563	-	LMOf2365_2363	-	pyridine nucleotide-disulfide oxidoreductase family protein
2340	 41.16	0	2421593..2422588	+	331	46908564	-	LMOf2365_2364	-	pyridine nucleotide-disulfide oxidoreductase family protein
2341	 42.70	+1	2422676..2423305	+	209	46908565	-	LMOf2365_2365	-	hypothetical protein
2342	 41.03	0	2423351..2423584	-	77	46908566	-	LMOf2365_2366	-	hypothetical protein
2343	 43.12	+1	2423606..2423932	-	108	46908567	-	LMOf2365_2367	-	hypothetical protein
2344	 47.47	+2	2424173..2424370	-	65	46908568	-	LMOf2365_2368	-	hypothetical protein
2345	 35.83	0	2424411..2424530	-	39	46908569	-	LMOf2365_2369	-	hypothetical protein
2346	 36.73	0	2424856..2427243	+	795	46908570	-	LMOf2365_2370	-	cell wall surface anchor family protein
2347	 37.13	0	2427416..2427652	+	78	46908571	-	LMOf2365_2371	-	NifU family protein
2348	 42.32	+1	2427765..2428265	+	166	46908572	-	LMOf2365_2372	-	hypothetical protein
2349	 40.73	0	2428290..2429600	-	436	46908573	-	LMOf2365_2373	-	CBS domain-containing protein
2350	 40.77	0	2429636..2430079	-	147	46908574	-	LMOf2365_2374	-	acetyltransferase
2351	 41.02	0	2430128..2430895	-	255	46908575	-	LMOf2365_2375	-	HAD family hydrolase
2352	 36.59	0	2430915..2431190	-	91	46908576	-	LMOf2365_2376	-	hypothetical protein
2353	 40.53	0	2431187..2432575	-	462	46908577	-	LMOf2365_2377	-	Ser/Thr protein phosphatase family protein
2354	 43.82	+1	2432702..2433550	+	282	46908578	-	LMOf2365_2378	-	hypothetical protein
2355	 39.07	0	2433551..2433916	+	121	46908579	-	LMOf2365_2379	-	hypothetical protein
2356	 40.57	0	2433949..2434791	-	280	46908580	-	LMOf2365_2380	-	hypothetical protein
2357	 33.02	-1	2434933..2435247	-	104	46908581	-	LMOf2365_2381	-	hypothetical protein
2358	 41.79	+1	2435382..2436776	-	464	46908582	sufB	LMOf2365_2382	-	FeS assembly protein SufB
2359	 41.67	+1	2436799..2437242	-	147	46908583	-	LMOf2365_2383	-	NifU family protein
2360	 42.05	+1	2437239..2438465	-	408	46908584	-	LMOf2365_2384	-	SufD subfamily cysteine desulfurase
2361	 40.93	0	2438466..2439755	-	429	46908585	sufD	LMOf2365_2385	-	FeS assembly protein SufD
2362	 40.20	0	2439786..2440571	-	261	46908586	sufC	LMOf2365_2386	-	SUF system FeS assembly ATPase
2363	 35.00	0	2440911..2441987	+	358	46908587	-	LMOf2365_2387	-	putative lipoprotein
2364	 35.74	0	2442029..2442859	-	276	46908588	-	LMOf2365_2388	-	ABC transporter, substrate-binding protein
2365	 39.70	0	2442924..2443598	-	224	46908589	-	LMOf2365_2389	-	ABC transporter, permease protein
2366	 40.37	0	2443595..2444617	-	340	46908590	-	LMOf2365_2390	-	ABC transporter, ATP-binding protein
2367	 27.51	-2	2444934..2445122	-	62	46908591	-	LMOf2365_2391	-	hypothetical protein
2368	 38.15	0	2445201..2446343	-	380	46908592	-	LMOf2365_2392	-	sensor histidine kinase
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.