IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2222	 38.04	0	2296372..2297433	-	353	46908446	hemE	LMOf2365_2245	-	uroporphyrinogen decarboxylase
2223	 34.72	0	2297630..2298133	+	167	46908447	-	LMOf2365_2246	-	hypothetical protein
2224	 36.62	0	2298172..2299389	-	405	46908448	-	LMOf2365_2247	-	ABC transporter, permease protein
2225	 36.52	0	2299379..2300131	-	250	46908449	-	LMOf2365_2248	-	ABC transporter, ATP-binding protein
2226	 37.59	0	2300292..2300714	+	140	46908450	-	LMOf2365_2249	-	HIT family protein
2227	 35.54	0	2300744..2301106	+	120	46908451	-	LMOf2365_2250	-	hypothetical protein
2228	 31.85	-1	2301289..2301828	+	179	46908452	-	LMOf2365_2251	-	hypothetical protein
2229	 36.96	0	2301945..2302826	+	293	46908453	prsA-2	LMOf2365_2252	-	protein export protein
2230	 36.52	0	2302867..2303808	-	313	46908454	-	LMOf2365_2253	-	3'-5' exoribonuclease YhaM
2231	 35.83	0	2303853..2306576	-	907	46908455	-	LMOf2365_2254	-	hypothetical protein
2232	 36.57	0	2306573..2307808	-	411	46908456	-	LMOf2365_2255	-	Ser/Thr protein phosphatase family protein
2233	 34.18	-1	2307951..2308304	-	117	46908457	-	LMOf2365_2256	-	hypothetical protein
2234	 35.19	0	2308386..2309519	-	377	46908458	-	LMOf2365_2257	-	hypothetical protein
2235	 39.40	0	2309623..2310990	-	455	46908459	fumC	LMOf2365_2258	-	fumarate hydratase
2236	 37.86	0	2311060..2311854	-	264	46908460	-	LMOf2365_2259	-	hypothetical protein
2237	 36.98	0	2311851..2312756	-	301	46908461	-	LMOf2365_2260	-	ABC transporter, ATP-binding protein
2238	 31.82	-1	2312756..2312953	-	65	46908462	-	LMOf2365_2261	-	hypothetical protein
2239	 38.61	0	2313063..2315204	-	713	46908463	-	LMOf2365_2262	-	penicillin-binding protein
2240	 37.09	0	2315527..2315952	+	141	46908464	-	LMOf2365_2263	-	arsenate reductase, putative
2241	 37.01	0	2316016..2316885	+	289	46908465	-	LMOf2365_2264	-	cation efflux family protein
2242	 38.62	0	2317141..2318445	+	434	46908466	-	LMOf2365_2265	-	CBS domain-containing protein
2243	 39.14	0	2318486..2319364	-	292	46908467	-	LMOf2365_2266	-	LysR family transcriptional regulator
2244	 43.16	+1	2319665..2320519	+	284	46908468	-	LMOf2365_2267	-	IolI protein, putative
2245	 43.51	+1	2320579..2322513	+	644	46908469	-	LMOf2365_2268	-	NADH oxidase, putative
2246	 39.20	0	2322572..2323441	+	289	46908470	-	LMOf2365_2269	-	shikimate 5-dehydrogenase
2247	 37.97	0	2323474..2324682	+	402	46908471	-	LMOf2365_2270	-	transporter, putative
2248	 36.94	0	2324842..2326032	+	396	46908472	-	LMOf2365_2271	-	major facilitator family transporter
2249	 32.58	-1	2326071..2327135	-	354	46908473	-	LMOf2365_2272	-	hypothetical protein
2250	 32.88	-1	2327132..2328010	-	292	46908474	-	LMOf2365_2273	-	ABC transporter, ATP-binding protein
2251	 33.84	-1	2328000..2328395	-	131	46908475	-	LMOf2365_2274	-	GntR family transcriptional regulator
2252	 37.37	0	2329106..2329675	+	189	46908476	-	LMOf2365_2276	-	Ada regulatory protein, putative
2253	 39.89	0	2329697..2330566	+	289	46908477	-	LMOf2365_2277	-	ribosomal large subunit pseudouridine synthase D
2254	 36.64	0	2330579..2330971	-	130	46908478	-	LMOf2365_2278	-	glyoxalase family protein
2255	 39.73	0	2330973..2331629	-	218	46908479	-	LMOf2365_2279	-	hypothetical protein
2256	 38.87	0	2331626..2332510	-	294	46908480	-	LMOf2365_2280	-	aldo/keto reductase family oxidoreductase
2257	 33.98	-1	2332897..2333517	+	206	46908481	-	LMOf2365_2281	-	hypothetical protein
2258	 41.04	0	2333531..2334529	+	332	46908482	-	LMOf2365_2282	-	phosphate transporter family protein
2259	 38.74	0	2334721..2336181	+	486	46908483	-	LMOf2365_2283	-	His/Glu/Gln/Arg/opine ABC transporter permease
2260	 42.42	+1	2336174..2336899	+	241	46908484	-	LMOf2365_2284	-	amino acid ABC transporter, ATP-binding protein
2261	 37.50	0	2336972..2338123	+	383	46908485	aspB	LMOf2365_2285	-	aspartate aminotransferase
2262	 38.41	0	2338167..2338796	-	209	46908486	-	LMOf2365_2286	-	HAD superfamily hydrolase
2263	 39.21	0	2338969..2340261	+	430	46908487	-	LMOf2365_2287	-	xanthine/uracil permease family protein
2264	 39.33	0	2340374..2340640	+	88	46908488	-	LMOf2365_2288	-	hypothetical protein
2265	 42.34	+1	2340683..2341204	-	173	46908489	-	LMOf2365_2289	-	PfpI family intracellular peptidase
2266	 29.28	-2	2341368..2341712	-	114	46908490	-	LMOf2365_2290	-	hypothetical protein
2267	 36.98	0	2341709..2341900	-	63	46908491	-	LMOf2365_2291	-	ribulose-phosphate 3-epimerase family protein
2268	 37.32	0	2342051..2342401	+	116	46908492	-	LMOf2365_2292	-	PTS system, beta-glucoside-specific, IIA component
2269	 30.71	-2	2342392..2343267	-	291	46908493	-	LMOf2365_2293	-	acetyltransferase
2270	 38.19	0	2343347..2343655	-	102	46908494	-	LMOf2365_2294	-	hypothetical protein
2271	 36.12	0	2343720..2344472	-	250	46908495	-	LMOf2365_2295	-	hypothetical protein
2272	 38.87	0	2344624..2345436	+	270	46908496	-	LMOf2365_2296	-	HAD family hydrolase
2273	 34.55	0	2345514..2346416	-	300	46908497	-	LMOf2365_2297	-	hypothetical protein
2274	 32.23	-1	2346500..2346862	-	120	46908498	-	LMOf2365_2298	-	hypothetical protein
2275	 35.34	0	2346882..2347730	-	282	46908499	-	LMOf2365_2299	-	fumarylacetoacetate hydrolase family protein
2276	 34.12	-1	2347731..2351438	-	1235	46908500	addA	LMOf2365_2300	-	ATP-dependent nuclease, subunit A
2277	 34.43	0	2351440..2354913	-	1157	46908501	addB	LMOf2365_2301	-	ATP-dependent nuclease, subunit B
2278	 31.93	-1	2355063..2355419	-	118	46908502	yhzC	LMOf2365_2302	-	YhzC protein
2279	 34.15	-1	2355550..2356158	+	202	46908503	-	LMOf2365_2303	-	transcription regulator
2280	 33.33	-1	2356213..2356569	-	118	46908504	-	LMOf2365_2304	-	DNA-binding protein
2281	 39.55	0	2356666..2358564	-	632	46908505	-	LMOf2365_2305	-	PTS system, fructose-specific, IIABC component
2282	 36.69	0	2358566..2359489	-	307	46908506	fruB	LMOf2365_2306	-	1-phosphofructokinase
2283	 35.06	0	2359486..2360238	-	250	46908507	-	LMOf2365_2307	-	DeoR family transcriptional regulator
2284	 35.07	0	2360456..2361781	+	441	46908508	-	LMOf2365_2308	-	aminopeptidase C
2285	 39.19	0	2361778..2362221	-	147	46908509	-	LMOf2365_2309	-	hypothetical protein
2286	 40.57	0	2362302..2363213	-	303	46908510	-	LMOf2365_2310	-	indigoidine synthase A-like protein
2287	 40.48	0	2363210..2364328	-	372	46908511	-	LMOf2365_2311	-	carbohydrate kinase
2288	 40.88	0	2364461..2365162	-	233	46908512	rsuA	LMOf2365_2312	-	ribosomal small subunit pseudouridine synthase A
2289	 42.33	+1	2365236..2366558	-	440	46908513	-	LMOf2365_2313	-	NtaA/SnaA/SoxA family monooxygenase
2290	 38.20	0	2366555..2366821	-	88	46908514	-	LMOf2365_2314	-	glutaredoxin family protein
2291	 41.67	+1	2366814..2367809	-	331	46908515	-	LMOf2365_2315	-	luciferase family protein
2292	 40.90	0	2367806..2368585	-	259	46908516	-	LMOf2365_2316	-	amino acid ABC transporter, ATP-binding protein
2293	 41.38	0	2368582..2369289	-	235	46908517	-	LMOf2365_2317	-	amino acid ABC transporter, permease protein
2294	 39.19	0	2369303..2370019	-	238	46908518	-	LMOf2365_2318	-	amino acid ABC transporter, permease protein
2295	 36.17	0	2370041..2370850	-	269	46908519	-	LMOf2365_2319	-	amino acid ABC transporter, amino acid-binding protein
2296	 43.39	+1	2370867..2371403	-	178	46908520	-	LMOf2365_2320	-	acetyltransferase
2297	 39.93	0	2371419..2371964	-	181	46908521	-	LMOf2365_2321	-	FMN reductase, NADPH-dependent
2298	 39.11	0	2372207..2373106	+	299	46908522	-	LMOf2365_2322	-	LysR family transcriptional regulator
2299	 38.25	0	2373132..2375084	-	650	46908523	-	LMOf2365_2323	-	sodium/hydrogen exchanger family protein
2300	 42.34	+1	2375208..2376806	-	532	46908524	-	LMOf2365_2324	-	hypothetical protein
2301	 39.69	0	2376810..2378051	-	413	46908525	-	LMOf2365_2325	-	transporter, putative
2302	 32.84	-1	2378252..2378863	-	203	46908526	-	LMOf2365_2326	-	hypothetical protein
2303	 32.96	-1	2379053..2379583	-	176	46908527	-	LMOf2365_2327	-	hypothetical protein
2304	 38.25	0	2379599..2380330	-	243	46908528	-	LMOf2365_2328	-	glucosamine-6-phosphate isomerase, putative
2305	 38.30	0	2380374..2381219	-	281	46908529	-	LMOf2365_2329	-	Cof-like hydrolase
2306	 39.80	0	2381339..2384122	-	927	46908530	-	LMOf2365_2330	-	hypothetical protein
2307	 38.00	0	2384156..2384626	-	156	46908531	-	LMOf2365_2331	-	Rrf2 family protein
2308	 29.91	-2	2384738..2384854	+	38	46908532	-	LMOf2365_2332	-	hypothetical protein
2309	 41.08	0	2385019..2386542	+	507	46908533	-	LMOf2365_2333	-	amino acid antiporter
2310	 42.58	+1	2386555..2387949	+	464	46908534	gadB	LMOf2365_2334	-	glutamate decarboxylase beta
2311	 36.77	0	2387958..2389472	-	504	46908535	-	LMOf2365_2335	-	RofA family transcriptional regulator
2312	 35.48	0	2396512..2396604	-	30	46908536	-	LMOf2365_2336	-	hypothetical protein
2313	 42.03	+1	2396689..2397447	-	252	46908537	-	LMOf2365_2337	-	DeoR family transcriptional regulator
2314	 39.25	0	2397552..2398904	-	450	46908538	pgi	LMOf2365_2338	-	glucose-6-phosphate isomerase
2315	 40.20	0	2399006..2399413	-	135	46908539	-	LMOf2365_2339	-	MutT/nudix family protein
2316	 34.75	0	2399561..2399914	-	117	46908540	-	LMOf2365_2340	-	general stress protein 13
2317	 40.27	0	2400068..2401234	+	388	46908541	-	LMOf2365_2341	-	aminotransferase, class I
2318	 36.96	0	2401373..2402476	+	367	46908542	-	LMOf2365_2342	-	ABC transporter, permease protein
2319	 41.26	0	2402476..2403156	+	226	46908543	-	LMOf2365_2343	-	ABC transporter, ATP-binding protein
2320	 38.93	0	2403140..2403514	-	124	46908544	-	LMOf2365_2344	-	PTS system, cellobiose-specific, IIB component
2321	 40.53	0	2403759..2405120	+	453	46908545	-	LMOf2365_2345	-	aspartate kinase
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.