IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2174	 30.60	-2	2237960..2238655	-	231	46908398	-	LMOf2365_2197	-	hypothetical protein
2175	 32.59	-1	2238908..2239579	-	223	46908399	-	LMOf2365_2198	-	cyclic nucleotide-binding protein
2176	 35.28	0	2239644..2240261	-	205	46908400	-	LMOf2365_2199	-	metallo-beta-lactamase family protein
2177	 36.92	0	2240392..2240781	+	129	46908401	-	LMOf2365_2200	-	lactoylglutathione lyase, putative
2178	 28.30	-2	2240804..2240962	+	52	46908402	-	LMOf2365_2201	-	hypothetical protein
2179	 41.72	+1	2241008..2241937	-	309	46908403	-	LMOf2365_2202	-	enoyl-(acyl-carrier-protein) reductase
2180	 41.91	+1	2241959..2243182	-	407	46908404	-	LMOf2365_2203	-	major facilitator family transporter
2181	 40.40	0	2243179..2244762	-	527	46908405	pct	LMOf2365_2204	-	propionate CoA-transferase
2182	 38.91	0	2244992..2246299	-	435	46908406	-	LMOf2365_2205	-	sigma-54 dependent transcriptional regulator
2183	 35.38	0	2246465..2247538	-	357	46908407	-	LMOf2365_2206	-	GGDEF domain-containing protein
2184	 40.29	0	2247717..2248478	-	253	46908408	-	LMOf2365_2207	-	3-ketoacyl-(acyl-carrier-protein) reductase
2185	 34.04	-1	2248662..2249225	+	187	46908409	-	LMOf2365_2208	-	TetR family transcriptional regulator
2186	 32.76	-1	2249331..2249678	+	115	46908410	-	LMOf2365_2209	-	hypothetical protein
2187	 34.99	0	2249718..2254307	-	1529	46908411	-	LMOf2365_2210	-	cell wall surface anchor family protein
2188	 37.08	0	2254576..2259669	-	1697	46908412	-	LMOf2365_2211	-	cell wall surface anchor family protein
2189	 35.94	0	2259889..2263344	-	1151	46908413	-	LMOf2365_2212	-	cell wall surface anchor family protein
2190	 30.61	-2	2263537..2264013	-	158	46908414	-	LMOf2365_2213	-	hypothetical protein
2191	 33.33	-1	2264074..2264814	-	246	46908415	-	LMOf2365_2214	-	hypothetical protein
2192	 37.56	0	2264818..2265597	-	259	46908416	-	LMOf2365_2215	-	iron compound ABC transporter, ATP-binding protein
2193	 40.81	0	2265578..2266567	-	329	46908417	-	LMOf2365_2216	-	iron compound ABC transporter, permease protein
2194	 39.63	0	2266557..2267429	-	290	46908418	-	LMOf2365_2217	-	iron compound ABC transporter, iron compound-binding protein
2195	 36.67	0	2267516..2269225	-	569	46908419	-	LMOf2365_2218	-	hypothetical protein
2196	 37.32	0	2269238..2269864	-	208	46908420	-	LMOf2365_2219	-	hypothetical protein
2197	 31.03	-1	2270075..2270335	-	86	46908421	-	LMOf2365_2220	-	hypothetical protein
2198	 36.27	0	2270634..2272439	-	601	46908422	pepF	LMOf2365_2221	-	oligoendopeptidase F
2199	 34.53	0	2272512..2273597	-	361	46908423	-	LMOf2365_2222	-	CoiA-like family protein
2200	 36.85	0	2273753..2274406	-	217	46908424	-	LMOf2365_2223	-	adaptor protein
2201	 37.12	0	2274638..2275033	-	131	46908425	spxA	LMOf2365_2224	-	transcriptional regulator Spx
2202	 37.67	0	2275353..2276321	-	322	46908426	-	LMOf2365_2225	-	oligopeptide ABC transporter, ATP-binding protein
2203	 38.16	0	2276318..2277394	-	358	46908427	-	LMOf2365_2226	-	oligopeptide ABC transporter, ATP-binding protein
2204	 36.14	0	2277412..2278446	-	344	46908428	-	LMOf2365_2227	-	oligopeptide ABC transporter, permease protein
2205	 36.88	0	2278446..2279375	-	309	46908429	-	LMOf2365_2228	-	oligopeptide ABC transporter, permease protein
2206	 36.14	0	2279654..2281330	-	558	46908430	-	LMOf2365_2229	-	oligopeptide ABC transporter, oligopeptide-binding protein
2207	 31.59	-1	2281954..2282298	+	114	46908431	-	LMOf2365_2230	-	hypothetical protein
2208	 36.75	0	2282633..2283628	+	331	46908432	trpS	LMOf2365_2231	-	tryptophanyl-tRNA synthetase
2209	 38.61	0	2283684..2284100	-	138	46908433	-	LMOf2365_2232	-	OsmC/Ohr family protein
2210	 34.87	0	2284084..2284539	-	151	46908434	-	LMOf2365_2233	-	MarR family transcriptional regulator
2211	 39.61	0	2284658..2285899	-	413	46908435	fabF	LMOf2365_2234	-	beta-ketoacyl-acyl carrier protein synthase II
2212	 39.72	0	2286102..2287040	-	312	46908436	fabH	LMOf2365_2235	-	3-oxoacyl-(acyl carrier protein) synthase III
2213	 36.14	0	2287160..2288263	-	367	46908437	-	LMOf2365_2236	-	N-acetylmuramoyl-L-alanine amidase
2214	 32.28	-1	2288610..2288798	+	62	46908438	-	LMOf2365_2237	-	hypothetical protein
2215	 38.26	0	2288888..2289577	-	229	46908439	gpm	LMOf2365_2238	-	phosphoglycerate mutase
2216	 37.56	0	2289668..2292268	-	866	46908440	-	LMOf2365_2239	-	clpB protein
2217	 37.61	0	2292416..2293093	-	225	46908441	-	LMOf2365_2240	-	hypothetical protein
2218	 36.84	0	2293205..2293975	-	256	46908442	-	LMOf2365_2241	-	HAD superfamily hydrolase
2219	 35.50	0	2294039..2294824	-	261	46908443	-	LMOf2365_2242	-	acetyltransferase
2220	 32.75	-1	2294945..2295289	-	114	46908444	-	LMOf2365_2243	-	hypothetical protein
2221	 38.17	0	2295446..2296375	-	309	46908445	hemH	LMOf2365_2244	-	ferrochelatase
2222	 38.04	0	2296372..2297433	-	353	46908446	hemE	LMOf2365_2245	-	uroporphyrinogen decarboxylase
2223	 34.72	0	2297630..2298133	+	167	46908447	-	LMOf2365_2246	-	hypothetical protein
2224	 36.62	0	2298172..2299389	-	405	46908448	-	LMOf2365_2247	-	ABC transporter, permease protein
2225	 36.52	0	2299379..2300131	-	250	46908449	-	LMOf2365_2248	-	ABC transporter, ATP-binding protein
2226	 37.59	0	2300292..2300714	+	140	46908450	-	LMOf2365_2249	-	HIT family protein
2227	 35.54	0	2300744..2301106	+	120	46908451	-	LMOf2365_2250	-	hypothetical protein
2228	 31.85	-1	2301289..2301828	+	179	46908452	-	LMOf2365_2251	-	hypothetical protein
2229	 36.96	0	2301945..2302826	+	293	46908453	prsA-2	LMOf2365_2252	-	protein export protein
2230	 36.52	0	2302867..2303808	-	313	46908454	-	LMOf2365_2253	-	3'-5' exoribonuclease YhaM
2231	 35.83	0	2303853..2306576	-	907	46908455	-	LMOf2365_2254	-	hypothetical protein
2232	 36.57	0	2306573..2307808	-	411	46908456	-	LMOf2365_2255	-	Ser/Thr protein phosphatase family protein
2233	 34.18	-1	2307951..2308304	-	117	46908457	-	LMOf2365_2256	-	hypothetical protein
2234	 35.19	0	2308386..2309519	-	377	46908458	-	LMOf2365_2257	-	hypothetical protein
2235	 39.40	0	2309623..2310990	-	455	46908459	fumC	LMOf2365_2258	-	fumarate hydratase
2236	 37.86	0	2311060..2311854	-	264	46908460	-	LMOf2365_2259	-	hypothetical protein
2237	 36.98	0	2311851..2312756	-	301	46908461	-	LMOf2365_2260	-	ABC transporter, ATP-binding protein
2238	 31.82	-1	2312756..2312953	-	65	46908462	-	LMOf2365_2261	-	hypothetical protein
2239	 38.61	0	2313063..2315204	-	713	46908463	-	LMOf2365_2262	-	penicillin-binding protein
2240	 37.09	0	2315527..2315952	+	141	46908464	-	LMOf2365_2263	-	arsenate reductase, putative
2241	 37.01	0	2316016..2316885	+	289	46908465	-	LMOf2365_2264	-	cation efflux family protein
2242	 38.62	0	2317141..2318445	+	434	46908466	-	LMOf2365_2265	-	CBS domain-containing protein
2243	 39.14	0	2318486..2319364	-	292	46908467	-	LMOf2365_2266	-	LysR family transcriptional regulator
2244	 43.16	+1	2319665..2320519	+	284	46908468	-	LMOf2365_2267	-	IolI protein, putative
2245	 43.51	+1	2320579..2322513	+	644	46908469	-	LMOf2365_2268	-	NADH oxidase, putative
2246	 39.20	0	2322572..2323441	+	289	46908470	-	LMOf2365_2269	-	shikimate 5-dehydrogenase
2247	 37.97	0	2323474..2324682	+	402	46908471	-	LMOf2365_2270	-	transporter, putative
2248	 36.94	0	2324842..2326032	+	396	46908472	-	LMOf2365_2271	-	major facilitator family transporter
2249	 32.58	-1	2326071..2327135	-	354	46908473	-	LMOf2365_2272	-	hypothetical protein
2250	 32.88	-1	2327132..2328010	-	292	46908474	-	LMOf2365_2273	-	ABC transporter, ATP-binding protein
2251	 33.84	-1	2328000..2328395	-	131	46908475	-	LMOf2365_2274	-	GntR family transcriptional regulator
2252	 37.37	0	2329106..2329675	+	189	46908476	-	LMOf2365_2276	-	Ada regulatory protein, putative
2253	 39.89	0	2329697..2330566	+	289	46908477	-	LMOf2365_2277	-	ribosomal large subunit pseudouridine synthase D
2254	 36.64	0	2330579..2330971	-	130	46908478	-	LMOf2365_2278	-	glyoxalase family protein
2255	 39.73	0	2330973..2331629	-	218	46908479	-	LMOf2365_2279	-	hypothetical protein
2256	 38.87	0	2331626..2332510	-	294	46908480	-	LMOf2365_2280	-	aldo/keto reductase family oxidoreductase
2257	 33.98	-1	2332897..2333517	+	206	46908481	-	LMOf2365_2281	-	hypothetical protein
2258	 41.04	0	2333531..2334529	+	332	46908482	-	LMOf2365_2282	-	phosphate transporter family protein
2259	 38.74	0	2334721..2336181	+	486	46908483	-	LMOf2365_2283	-	His/Glu/Gln/Arg/opine ABC transporter permease
2260	 42.42	+1	2336174..2336899	+	241	46908484	-	LMOf2365_2284	-	amino acid ABC transporter, ATP-binding protein
2261	 37.50	0	2336972..2338123	+	383	46908485	aspB	LMOf2365_2285	-	aspartate aminotransferase
2262	 38.41	0	2338167..2338796	-	209	46908486	-	LMOf2365_2286	-	HAD superfamily hydrolase
2263	 39.21	0	2338969..2340261	+	430	46908487	-	LMOf2365_2287	-	xanthine/uracil permease family protein
2264	 39.33	0	2340374..2340640	+	88	46908488	-	LMOf2365_2288	-	hypothetical protein
2265	 42.34	+1	2340683..2341204	-	173	46908489	-	LMOf2365_2289	-	PfpI family intracellular peptidase
2266	 29.28	-2	2341368..2341712	-	114	46908490	-	LMOf2365_2290	-	hypothetical protein
2267	 36.98	0	2341709..2341900	-	63	46908491	-	LMOf2365_2291	-	ribulose-phosphate 3-epimerase family protein
2268	 37.32	0	2342051..2342401	+	116	46908492	-	LMOf2365_2292	-	PTS system, beta-glucoside-specific, IIA component
2269	 30.71	-2	2342392..2343267	-	291	46908493	-	LMOf2365_2293	-	acetyltransferase
2270	 38.19	0	2343347..2343655	-	102	46908494	-	LMOf2365_2294	-	hypothetical protein
2271	 36.12	0	2343720..2344472	-	250	46908495	-	LMOf2365_2295	-	hypothetical protein
2272	 38.87	0	2344624..2345436	+	270	46908496	-	LMOf2365_2296	-	HAD family hydrolase
2273	 34.55	0	2345514..2346416	-	300	46908497	-	LMOf2365_2297	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.