IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2106	 39.44	0	2163024..2163956	-	310	46908330	-	LMOf2365_2127	-	carbohydrate kinase
2107	 38.07	0	2163974..2165323	-	449	46908331	-	LMOf2365_2128	-	PTS system, galactitol-specific, IIC component, putative
2108	 34.42	0	2165351..2165626	-	91	46908332	-	LMOf2365_2129	-	PTS system galactitol-specific enzyme IIB component
2109	 35.26	0	2165632..2166099	-	155	46908333	-	LMOf2365_2130	-	PTS system galactitol-specific enzyme IIA component
2110	 36.97	0	2166107..2168113	-	668	46908334	-	LMOf2365_2131	-	hypothetical protein
2111	 41.84	+1	2168294..2169739	-	481	46908335	-	LMOf2365_2132	-	transcriptional regulator, GntR family/aminotransferase family protein
2112	 45.61	+2	2169863..2170750	+	295	46908336	-	LMOf2365_2133	-	pyridoxine biosynthesis protein
2113	 40.39	0	2170752..2171318	+	188	46908337	-	LMOf2365_2134	-	glutamine amidotransferase subunit PdxT
2114	 41.00	0	2171357..2172334	-	325	46908338	eutD	LMOf2365_2135	-	phosphotransacetylase
2115	 39.04	0	2172654..2172881	+	75	46908339	-	LMOf2365_2136	-	ferrous iron transport protein A
2116	 41.35	0	2172878..2174872	+	664	46908340	feoB	LMOf2365_2137	-	ferrous iron transport protein B
2117	 34.43	0	2174879..2175061	+	60	46908341	-	LMOf2365_2138	-	hypothetical protein
2118	 37.08	0	2175091..2175945	-	284	46908342	-	LMOf2365_2139	-	Ser/Thr protein phosphatase family protein
2119	 35.70	0	2176198..2176959	+	253	46908343	-	LMOf2365_2140	-	DeoR family transcriptional regulator
2120	 39.42	0	2176965..2178098	+	377	46908344	nagA-2	LMOf2365_2141	-	N-acetylglucosamine-6-phosphate deacetylase
2121	 34.32	0	2178140..2178949	+	269	46908345	-	LMOf2365_2142	-	alpha/beta fold family hydrolase
2122	 40.65	0	2179055..2180011	-	318	46908346	manA	LMOf2365_2143	-	mannose-6-phosphate isomerase, class I
2123	 39.89	0	2180091..2180822	-	243	46908347	-	LMOf2365_2144	-	nitroreductase family protein
2124	 41.13	0	2180945..2181175	+	76	46908348	-	LMOf2365_2145	-	DNA-binding protein, putative
2125	 40.61	0	2181259..2182014	+	251	46908349	-	LMOf2365_2146	-	putative heme peroxidase
2126	 36.85	0	2182210..2182977	+	255	46908350	-	LMOf2365_2147	-	ABC transporter, ATP-binding protein
2127	 33.59	-1	2182964..2184904	+	646	46908351	-	LMOf2365_2148	-	ABC transporter, permease protein
2128	 33.09	-1	2184942..2185775	-	277	46908352	-	LMOf2365_2149	-	hypothetical protein
2129	 32.68	-1	2185827..2186288	+	153	46908353	-	LMOf2365_2150	-	acetyltransferase
2130	 39.10	0	2186323..2187675	-	450	46908354	glmM	LMOf2365_2151	-	phosphoglucosamine mutase
2131	 38.03	0	2187925..2189286	-	453	46908355	-	LMOf2365_2152	-	hypothetical protein
2132	 37.47	0	2189283..2190104	-	273	46908356	-	LMOf2365_2153	-	hypothetical protein
2133	 39.26	0	2191682..2193943	-	753	46908357	-	LMOf2365_2155	-	glycosyl transferase family protein
2134	 40.17	0	2193959..2194792	-	277	46908358	-	LMOf2365_2156	-	hypothetical protein
2135	 41.67	+1	2194820..2195671	-	283	46908359	-	LMOf2365_2157	-	maltose/maltodextrin ABC transporter, permease protein
2136	 37.54	0	2195672..2196979	-	435	46908360	-	LMOf2365_2158	-	maltose/maltodextrin ABC transporter, permease protein
2137	 36.83	0	2197067..2198326	-	419	46908361	-	LMOf2365_2159	-	maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein
2138	 38.29	0	2198539..2200314	-	591	46908362	nplT	LMOf2365_2160	-	neopullulanase
2139	 35.85	0	2200572..2201207	+	211	46908363	-	LMOf2365_2161	-	CAAX amino terminal protease family protein
2140	 37.47	0	2201243..2202208	-	321	46908364	-	LMOf2365_2162	-	LacI family transcription regulator
2141	 32.91	-1	2202347..2202583	-	78	46908365	-	LMOf2365_2163	-	hypothetical protein
2142	 36.46	0	2203183..2205006	-	607	46908366	-	LMOf2365_2164	-	hypothetical protein
2143	 30.72	-1	2206015..2206704	-	229	46908367	-	LMOf2365_2165	-	hypothetical protein
2144	 32.77	-1	2207183..2207893	+	236	46908368	-	LMOf2365_2166	-	hypothetical protein
2145	 38.44	0	2207923..2208822	-	299	46908369	-	LMOf2365_2167	-	hypothetical protein
2146	 40.35	0	2208839..2209693	-	284	46908370	-	LMOf2365_2168	-	fructose-bisphosphate aldolase
2147	 32.51	-1	2211631..2213088	-	485	46908371	-	LMOf2365_2170	-	DNA-binding PRD domain-containing protein
2148	 36.88	0	2213284..2214186	+	300	46908372	-	LMOf2365_2171	-	ABC transporter, ATP-binding protein
2149	 39.24	0	2214179..2215414	+	411	46908373	-	LMOf2365_2172	-	ABC transporter, permease protein
2150	 39.24	0	2215431..2215904	+	157	46908374	-	LMOf2365_2173	-	acetyltransferase
2151	 37.09	0	2216494..2217159	-	221	46908375	-	LMOf2365_2174	-	hypothetical protein
2152	 40.62	0	2217400..2219115	+	571	46908376	-	LMOf2365_2175	-	mannose-6-phosphate isomerase, class I, putative
2153	 37.55	0	2219154..2219888	-	244	46908377	-	LMOf2365_2176	-	GntR family transcriptional regulator
2154	 43.17	+1	2220003..2221019	-	338	46908378	-	LMOf2365_2177	-	hypothetical protein
2155	 37.19	0	2221088..2221942	-	284	46908379	-	LMOf2365_2178	-	LysR family transcriptional regulator
2156	 39.09	0	2222048..2223055	+	335	46908380	-	LMOf2365_2179	-	hypothetical protein
2157	 34.89	0	2223111..2223752	+	213	46908381	-	LMOf2365_2180	-	hypothetical protein
2158	 36.79	0	2223802..2224119	-	105	46908382	-	LMOf2365_2181	-	hypothetical protein
2159	 33.33	-1	2224318..2224494	+	58	46908383	-	LMOf2365_2182	-	hypothetical protein
2160	 37.67	0	2224537..2224836	-	99	46908384	-	LMOf2365_2183	-	hypothetical protein
2161	 32.72	-1	2224943..2225269	-	108	46908385	-	LMOf2365_2184	-	thioredoxin, putative
2162	 42.92	+1	2225266..2225703	-	145	46908386	-	LMOf2365_2185	-	flavodoxin
2163	 36.00	0	2225700..2226749	-	349	46908387	nrdF	LMOf2365_2186	-	ribonucleotide-diphosphate reductase subunit beta
2164	 37.52	0	2226805..2229096	-	763	46908388	nrdA	LMOf2365_2187	-	ribonucleotide-diphosphate reductase subunit alpha
2165	 31.58	-1	2229632..2229973	+	113	46908389	-	LMOf2365_2188	-	hypothetical protein
2166	 40.01	0	2230027..2231928	-	633	46908390	-	LMOf2365_2189	-	metallo-beta-lactamase family protein
2167	 37.10	0	2232059..2232244	-	61	46908391	-	LMOf2365_2190	-	hypothetical protein
2168	 40.19	0	2232338..2233387	-	349	46908392	-	LMOf2365_2191	-	Gfo/Idh/MocA family oxidoreductase
2169	 40.76	0	2233410..2234378	-	322	46908393	-	LMOf2365_2192	-	hypothetical protein
2170	 43.85	+1	2234381..2235103	-	240	46908394	-	LMOf2365_2193	-	hypothetical protein
2171	 37.92	0	2235105..2235845	-	246	46908395	-	LMOf2365_2194	-	hypothetical protein
2172	 39.74	0	2235861..2236937	-	358	46908396	-	LMOf2365_2195	-	Gfo/Idh/MocA family oxidoreductase
2173	 36.18	0	2237012..2237890	-	292	46908397	-	LMOf2365_2196	-	AraC family transcriptional regulator
2174	 30.60	-2	2237960..2238655	-	231	46908398	-	LMOf2365_2197	-	hypothetical protein
2175	 32.59	-1	2238908..2239579	-	223	46908399	-	LMOf2365_2198	-	cyclic nucleotide-binding protein
2176	 35.28	0	2239644..2240261	-	205	46908400	-	LMOf2365_2199	-	metallo-beta-lactamase family protein
2177	 36.92	0	2240392..2240781	+	129	46908401	-	LMOf2365_2200	-	lactoylglutathione lyase, putative
2178	 28.30	-2	2240804..2240962	+	52	46908402	-	LMOf2365_2201	-	hypothetical protein
2179	 41.72	+1	2241008..2241937	-	309	46908403	-	LMOf2365_2202	-	enoyl-(acyl-carrier-protein) reductase
2180	 41.91	+1	2241959..2243182	-	407	46908404	-	LMOf2365_2203	-	major facilitator family transporter
2181	 40.40	0	2243179..2244762	-	527	46908405	pct	LMOf2365_2204	-	propionate CoA-transferase
2182	 38.91	0	2244992..2246299	-	435	46908406	-	LMOf2365_2205	-	sigma-54 dependent transcriptional regulator
2183	 35.38	0	2246465..2247538	-	357	46908407	-	LMOf2365_2206	-	GGDEF domain-containing protein
2184	 40.29	0	2247717..2248478	-	253	46908408	-	LMOf2365_2207	-	3-ketoacyl-(acyl-carrier-protein) reductase
2185	 34.04	-1	2248662..2249225	+	187	46908409	-	LMOf2365_2208	-	TetR family transcriptional regulator
2186	 32.76	-1	2249331..2249678	+	115	46908410	-	LMOf2365_2209	-	hypothetical protein
2187	 34.99	0	2249718..2254307	-	1529	46908411	-	LMOf2365_2210	-	cell wall surface anchor family protein
2188	 37.08	0	2254576..2259669	-	1697	46908412	-	LMOf2365_2211	-	cell wall surface anchor family protein
2189	 35.94	0	2259889..2263344	-	1151	46908413	-	LMOf2365_2212	-	cell wall surface anchor family protein
2190	 30.61	-2	2263537..2264013	-	158	46908414	-	LMOf2365_2213	-	hypothetical protein
2191	 33.33	-1	2264074..2264814	-	246	46908415	-	LMOf2365_2214	-	hypothetical protein
2192	 37.56	0	2264818..2265597	-	259	46908416	-	LMOf2365_2215	-	iron compound ABC transporter, ATP-binding protein
2193	 40.81	0	2265578..2266567	-	329	46908417	-	LMOf2365_2216	-	iron compound ABC transporter, permease protein
2194	 39.63	0	2266557..2267429	-	290	46908418	-	LMOf2365_2217	-	iron compound ABC transporter, iron compound-binding protein
2195	 36.67	0	2267516..2269225	-	569	46908419	-	LMOf2365_2218	-	hypothetical protein
2196	 37.32	0	2269238..2269864	-	208	46908420	-	LMOf2365_2219	-	hypothetical protein
2197	 31.03	-1	2270075..2270335	-	86	46908421	-	LMOf2365_2220	-	hypothetical protein
2198	 36.27	0	2270634..2272439	-	601	46908422	pepF	LMOf2365_2221	-	oligoendopeptidase F
2199	 34.53	0	2272512..2273597	-	361	46908423	-	LMOf2365_2222	-	CoiA-like family protein
2200	 36.85	0	2273753..2274406	-	217	46908424	-	LMOf2365_2223	-	adaptor protein
2201	 37.12	0	2274638..2275033	-	131	46908425	spxA	LMOf2365_2224	-	transcriptional regulator Spx
2202	 37.67	0	2275353..2276321	-	322	46908426	-	LMOf2365_2225	-	oligopeptide ABC transporter, ATP-binding protein
2203	 38.16	0	2276318..2277394	-	358	46908427	-	LMOf2365_2226	-	oligopeptide ABC transporter, ATP-binding protein
2204	 36.14	0	2277412..2278446	-	344	46908428	-	LMOf2365_2227	-	oligopeptide ABC transporter, permease protein
2205	 36.88	0	2278446..2279375	-	309	46908429	-	LMOf2365_2228	-	oligopeptide ABC transporter, permease protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.