IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2024	 40.74	0	2079045..2081810	-	921	46908248	ileS	LMOf2365_2044	-	isoleucyl-tRNA synthetase
2025	 36.36	0	2082093..2082620	-	175	46908249	divIVA	LMOf2365_2045	-	cell division protein DivIVA
2026	 37.93	0	2082716..2083237	-	173	46908250	-	LMOf2365_2046	-	3H domain-containing protein
2027	 38.84	0	2083242..2084348	-	368	46908251	-	LMOf2365_2047	-	carbon-sulfur lyase
2028	 43.16	+1	2084480..2085934	+	484	46908252	nadB	LMOf2365_2048	-	L-aspartate oxidase
2029	 42.43	+1	2085931..2086776	+	281	46908253	nadC	LMOf2365_2049	-	nicotinate-nucleotide pyrophosphorylase
2030	 41.69	+1	2086773..2087873	+	366	46908254	nadA	LMOf2365_2050	-	quinolinate synthetase
2031	 34.08	-1	2088198..2088464	-	88	46908255	-	LMOf2365_2051	-	IS3 family transposase OrfA
2032	 37.91	0	2088540..2088845	-	101	46908256	-	LMOf2365_2052	-	cell wall surface anchor family protein
2033	 36.63	0	2088873..2089358	-	161	46908257	-	LMOf2365_2053	-	hypothetical protein
2034	 33.12	-1	2089378..2089851	-	157	46908258	-	LMOf2365_2054	-	hypothetical protein
2035	 38.75	0	2089917..2091911	-	664	46908259	-	LMOf2365_2055	-	hypothetical protein
2036	 39.00	0	2092046..2094127	-	693	46908260	-	LMOf2365_2056	-	hypothetical protein
2037	 33.14	-1	2094391..2095929	-	512	46908261	-	LMOf2365_2057	-	hypothetical protein
2038	 35.77	0	2095951..2096730	-	259	46908262	-	LMOf2365_2058	-	methyltransferase, putative
2039	 36.36	0	2096758..2097351	-	197	46908263	-	LMOf2365_2059	-	TetR family transcriptional regulator
2040	 38.87	0	2098525..2099301	-	258	46908264	-	LMOf2365_2060	-	S4 domain-containing protein
2041	 34.71	0	2099426..2099716	-	96	46908265	-	LMOf2365_2061	-	YGGT family protein
2042	 37.69	0	2099739..2100197	-	152	46908266	-	LMOf2365_2062	-	hypothetical protein
2043	 37.54	0	2100201..2100890	-	229	46908267	-	LMOf2365_2063	-	hypothetical protein
2044	 40.82	0	2101009..2102184	-	391	46908268	ftsZ	LMOf2365_2064	-	cell division protein FtsZ
2045	 38.64	0	2102251..2103531	-	426	46908269	ftsA	LMOf2365_2065	-	cell division protein FtsA
2046	 33.58	-1	2103897..2104709	-	270	46908270	-	LMOf2365_2066	-	cell division protein FtsQ
2047	 39.47	0	2104732..2105823	-	363	46908271	murG	LMOf2365_2067	-	N-acetylglucosaminyl transferase
2048	 38.89	0	2105820..2107187	-	455	46908272	murD	LMOf2365_2068	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2049	 37.38	0	2107329..2108291	-	320	46908273	mraY	LMOf2365_2069	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2050	 40.24	0	2108350..2109825	-	491	46908274	murE	LMOf2365_2070	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2051	 38.16	0	2110000..2112255	-	751	46908275	-	LMOf2365_2071	-	penicillin-binding protein
2052	 34.99	0	2112252..2112614	-	120	46908276	-	LMOf2365_2072	-	cell division protein FtsL
2053	 38.87	0	2112631..2113569	-	312	46908277	mraW	LMOf2365_2073	-	S-adenosyl-methyltransferase MraW
2054	 37.27	0	2113582..2114013	-	143	46908278	mraZ	LMOf2365_2074	-	cell division protein MraZ
2055	 37.34	0	2114216..2115463	-	415	46908279	-	LMOf2365_2075	-	hypothetical protein
2056	 37.25	0	2115581..2117395	+	604	46908280	-	LMOf2365_2076	-	solute-binding family 5 protein
2057	 36.91	0	2117703..2118596	-	297	46908281	panE	LMOf2365_2077	-	2-dehydropantoate 2-reductase
2058	 43.68	+1	2118746..2118919	-	57	46908282	rpmF	LMOf2365_2078	-	50S ribosomal protein L32
2059	 39.48	0	2119010..2119546	-	178	46908283	-	LMOf2365_2079	-	hypothetical protein
2060	 42.54	+1	2119676..2120848	+	390	46908284	-	LMOf2365_2080	-	hypothetical protein
2061	 40.43	0	2120930..2123170	+	746	46908285	drrC	LMOf2365_2081	-	daunorubicin resistance protein
2062	 38.52	0	2123213..2124253	-	346	46908286	-	LMOf2365_2082	-	hypothetical protein
2063	 40.58	0	2124272..2124754	-	160	46908287	coaD	LMOf2365_2083	-	pantetheine-phosphate adenylyltransferase
2064	 37.81	0	2124757..2125314	-	185	46908288	-	LMOf2365_2084	-	methyltransferase, putative
2065	 34.40	0	2125411..2125692	-	93	46908289	-	LMOf2365_2085	-	hypothetical protein
2066	 43.11	+1	2125723..2126172	-	149	46908290	-	LMOf2365_2086	-	hypothetical protein
2067	 35.63	0	2126220..2127263	-	347	46908291	-	LMOf2365_2087	-	hypothetical protein
2068	 37.97	0	2127423..2128328	-	301	46908292	ctaB	LMOf2365_2088	-	protoheme IX farnesyltransferase
2069	 40.85	0	2128564..2129481	+	305	46908293	-	LMOf2365_2089	-	cytochrome oxidase assembly protein
2070	 37.73	0	2129628..2130332	+	234	46908294	-	LMOf2365_2090	-	ion transport protein, putative
2071	 39.88	0	2130338..2130979	-	213	46908295	-	LMOf2365_2091	-	MOSC domain-containing protein
2072	 42.07	+1	2130998..2131615	-	205	46908296	-	LMOf2365_2092	-	hypothetical protein
2073	 39.36	0	2131628..2133253	-	541	46908297	-	LMOf2365_2093	-	copper resistance domain-containing protein
2074	 37.50	0	2133393..2133584	+	63	46908298	-	LMOf2365_2094	-	hypothetical protein
2075	 35.92	0	2133646..2134032	+	128	46908299	mscL	LMOf2365_2095	-	large conductance mechanosensitive channel protein
2076	 36.39	0	2134167..2134559	-	130	46908300	-	LMOf2365_2096	-	hypothetical protein
2077	 38.10	0	2134604..2134813	-	69	46908301	-	LMOf2365_2097	-	hypothetical protein
2078	 36.40	0	2134964..2135941	-	325	46908302	cbH	LMOf2365_2098	-	choloylglycine hydrolase
2079	 41.93	+1	2136196..2137824	-	542	46908303	groEL	LMOf2365_2099	-	chaperonin GroEL
2080	 39.65	0	2137858..2138142	-	94	46908304	groES	LMOf2365_2100	-	co-chaperonin GroES
2081	 30.48	-2	2138240..2138344	+	34	46908305	-	LMOf2365_2101	-	hypothetical protein
2082	 34.06	-1	2138377..2139063	+	228	46908306	-	LMOf2365_2102	-	CAAX amino terminal protease family protein
2083	 30.30	-2	2139065..2139262	+	65	46908307	-	LMOf2365_2103	-	hypothetical protein
2084	 37.04	0	2139296..2139943	-	215	46908308	-	LMOf2365_2104	-	redox-sensing transcriptional repressor Rex
2085	 38.97	0	2140253..2142205	+	650	46908309	-	LMOf2365_2105	-	ABC transporter, ATP-binding protein
2086	 40.21	0	2142230..2143189	+	319	46908310	-	LMOf2365_2106	-	hypothetical protein
2087	 41.94	+1	2143734..2144756	-	340	46908311	-	LMOf2365_2107	-	O-sialoglycoprotein endopeptidase
2088	 41.67	+1	2144753..2145208	-	151	46908312	rimI	LMOf2365_2108	-	ribosomal-protein-alanine acetyltransferase
2089	 44.88	+1	2145205..2145897	-	230	46908313	-	LMOf2365_2109	-	hypothetical protein
2090	 41.99	+1	2145894..2146355	-	153	46908314	-	LMOf2365_2110	-	hypothetical protein
2091	 33.07	-1	2146460..2147602	-	380	46908315	-	LMOf2365_2111	-	putative lipoprotein
2092	 37.80	0	2147739..2148119	-	126	46908316	-	LMOf2365_2112	-	putative lipoprotein
2093	 34.73	0	2148214..2148570	-	118	46908317	-	LMOf2365_2113	-	CrcB protein, putative
2094	 40.00	0	2148560..2148949	-	129	46908318	-	LMOf2365_2114	-	CrcB protein
2095	 42.58	+1	2149055..2149681	-	208	46908319	-	LMOf2365_2115	-	hypothetical protein
2096	 37.66	0	2150838..2152526	-	562	46908320	-	LMOf2365_2117	-	cell wall surface anchor family protein
2097	 33.02	-1	2152623..2153894	-	423	46908321	-	LMOf2365_2118	-	DNA-binding protein
2098	 37.54	0	2154530..2155861	-	443	46908322	-	LMOf2365_2119	-	MATE efflux family protein
2099	 37.56	0	2155871..2156461	-	196	46908323	-	LMOf2365_2120	-	TetR family transcriptional regulator
2100	 39.27	0	2156572..2157615	-	347	46908324	-	LMOf2365_2121	-	lipase
2101	 38.93	0	2157848..2159062	+	404	46908325	argG	LMOf2365_2122	-	argininosuccinate synthase
2102	 40.92	0	2159066..2160436	+	456	46908326	argH	LMOf2365_2123	-	argininosuccinate lyase
2103	 40.75	0	2160604..2162127	+	507	46908327	-	LMOf2365_2124	-	glycine betaine transporter
2104	 36.87	0	2162171..2162368	-	65	46908328	-	LMOf2365_2125	-	hypothetical protein
2105	 37.63	0	2162372..2163022	-	216	46908329	-	LMOf2365_2126	-	hypothetical protein
2106	 39.44	0	2163024..2163956	-	310	46908330	-	LMOf2365_2127	-	carbohydrate kinase
2107	 38.07	0	2163974..2165323	-	449	46908331	-	LMOf2365_2128	-	PTS system, galactitol-specific, IIC component, putative
2108	 34.42	0	2165351..2165626	-	91	46908332	-	LMOf2365_2129	-	PTS system galactitol-specific enzyme IIB component
2109	 35.26	0	2165632..2166099	-	155	46908333	-	LMOf2365_2130	-	PTS system galactitol-specific enzyme IIA component
2110	 36.97	0	2166107..2168113	-	668	46908334	-	LMOf2365_2131	-	hypothetical protein
2111	 41.84	+1	2168294..2169739	-	481	46908335	-	LMOf2365_2132	-	transcriptional regulator, GntR family/aminotransferase family protein
2112	 45.61	+2	2169863..2170750	+	295	46908336	-	LMOf2365_2133	-	pyridoxine biosynthesis protein
2113	 40.39	0	2170752..2171318	+	188	46908337	-	LMOf2365_2134	-	glutamine amidotransferase subunit PdxT
2114	 41.00	0	2171357..2172334	-	325	46908338	eutD	LMOf2365_2135	-	phosphotransacetylase
2115	 39.04	0	2172654..2172881	+	75	46908339	-	LMOf2365_2136	-	ferrous iron transport protein A
2116	 41.35	0	2172878..2174872	+	664	46908340	feoB	LMOf2365_2137	-	ferrous iron transport protein B
2117	 34.43	0	2174879..2175061	+	60	46908341	-	LMOf2365_2138	-	hypothetical protein
2118	 37.08	0	2175091..2175945	-	284	46908342	-	LMOf2365_2139	-	Ser/Thr protein phosphatase family protein
2119	 35.70	0	2176198..2176959	+	253	46908343	-	LMOf2365_2140	-	DeoR family transcriptional regulator
2120	 39.42	0	2176965..2178098	+	377	46908344	nagA-2	LMOf2365_2141	-	N-acetylglucosamine-6-phosphate deacetylase
2121	 34.32	0	2178140..2178949	+	269	46908345	-	LMOf2365_2142	-	alpha/beta fold family hydrolase
2122	 40.65	0	2179055..2180011	-	318	46908346	manA	LMOf2365_2143	-	mannose-6-phosphate isomerase, class I
2123	 39.89	0	2180091..2180822	-	243	46908347	-	LMOf2365_2144	-	nitroreductase family protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.