IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1954	 35.58	0	2000703..2006714	-	2003	46908178	-	LMOf2365_1974	-	cell wall surface anchor family protein
1955	 33.33	-1	2006980..2007591	-	203	46908179	-	LMOf2365_1975	-	hypothetical protein
1956	 38.73	0	2008033..2008551	-	172	46908180	-	LMOf2365_1976	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1957	 35.46	0	2008567..2010357	-	596	46908181	resE	LMOf2365_1977	-	sensor histidine kinase ResE
1958	 40.73	0	2010458..2011174	-	238	46908182	resD	LMOf2365_1978	-	DNA-binding response regulator ResD
1959	 36.46	0	2011357..2012091	-	244	46908183	rluB	LMOf2365_1979	-	ribosomal large subunit pseudouridine synthase B
1960	 41.04	0	2012094..2012690	-	198	46908184	-	LMOf2365_1980	-	hypothetical protein
1961	 35.73	0	2012687..2013436	-	249	46908185	scpA	LMOf2365_1981	-	segregation and condensation protein A
1962	 40.27	0	2013452..2014762	-	436	46908186	lysA	LMOf2365_1982	-	diaminopimelate decarboxylase
1963	 39.68	0	2014943..2015761	-	272	46908187	-	LMOf2365_1983	-	purine nucleoside phosphorylase
1964	 38.99	0	2015780..2016964	-	394	46908188	deoB	LMOf2365_1984	-	phosphopentomutase
1965	 39.04	0	2016993..2017886	-	297	46908189	xerD	LMOf2365_1985	-	integrase/recombinase XerD
1966	 37.97	0	2018041..2018493	-	150	46908190	-	LMOf2365_1986	-	FUR family transcriptional regulator
1967	 42.33	+1	2018735..2019757	-	340	46908191	-	LMOf2365_1987	-	iron compound ABC transporter, permease protein
1968	 44.25	+1	2019757..2020782	-	341	46908192	-	LMOf2365_1988	-	iron compound ABC transporter, permease protein
1969	 39.92	0	2020884..2021825	-	313	46908193	-	LMOf2365_1989	-	iron compound ABC transporter, iron compound-binding protein
1970	 39.88	0	2021990..2022814	+	274	46908194	-	LMOf2365_1990	-	iron compound ABC transporter, ATP-binding protein
1971	 42.14	+1	2022804..2023802	+	332	46908195	-	LMOf2365_1991	-	pyridine nucleotide-disulfide oxidoreductase family protein
1972	 39.13	0	2023819..2024439	-	206	46908196	-	LMOf2365_1992	-	TetR family transcriptional regulator
1973	 38.48	0	2024439..2025254	-	271	46908197	-	LMOf2365_1993	-	ABC transporter, permease protein, putative
1974	 37.05	0	2025251..2026138	-	295	46908198	-	LMOf2365_1994	-	ABC transporter, ATP-binding protein
1975	 39.43	0	2026612..2027169	-	185	46908199	-	LMOf2365_1995	-	MutT/nudix family protein
1976	 34.70	0	2027443..2028102	+	219	46908200	-	LMOf2365_1996	-	hypothetical protein
1977	 38.92	0	2028080..2029279	+	399	46908201	-	LMOf2365_1997	-	tellurite resistance protein, putative
1978	 39.50	0	2029316..2030386	-	356	46908202	-	LMOf2365_1998	-	DNA-damage-inducible protein P, putative
1979	 35.48	0	2030495..2031286	-	263	46908203	-	LMOf2365_1999	-	short chain dehydrogenase/reductase family oxidoreductase
1980	 38.22	0	2031291..2032211	-	306	46908204	-	LMOf2365_2000	-	metallo-beta-lactamase family protein
1981	 27.78	-2	2032318..2032443	-	41	46908205	-	LMOf2365_2001	-	hypothetical protein
1982	 40.24	0	2032512..2033987	+	491	46908206	zwf	LMOf2365_2002	-	glucose-6-phosphate 1-dehydrogenase
1983	 34.95	0	2034106..2034537	+	143	46908207	-	LMOf2365_2003	-	hypothetical protein
1984	 39.30	0	2034689..2035174	-	161	46908208	-	LMOf2365_2004	-	hypothetical protein
1985	 37.12	0	2035147..2035674	-	175	46908209	-	LMOf2365_2005	-	acetyltransferase
1986	 43.24	+1	2036365..2038059	+	564	46908210	ilvD	LMOf2365_2006	-	dihydroxy-acid dehydratase
1987	 43.21	+1	2038077..2039798	+	573	46908211	ilvB	LMOf2365_2007	-	acetolactate synthase, large subunit, biosynthetic type
1988	 44.11	+1	2039799..2040290	+	163	46908212	ilvN	LMOf2365_2008	-	acetolactate synthase 3 regulatory subunit
1989	 40.76	0	2040389..2041384	+	331	46908213	ilvC	LMOf2365_2009	-	ketol-acid reductoisomerase
1990	 41.85	+1	2041542..2043080	+	512	46908214	leuA	LMOf2365_2010	-	2-isopropylmalate synthase
1991	 43.21	+1	2043082..2044134	+	350	46908215	leuB	LMOf2365_2011	-	3-isopropylmalate dehydrogenase
1992	 42.69	+1	2044136..2045524	+	462	46908216	leuC	LMOf2365_2012	-	isopropylmalate isomerase large subunit
1993	 40.21	0	2045511..2046092	+	193	46908217	leuD	LMOf2365_2013	-	isopropylmalate isomerase small subunit
1994	 40.98	0	2046111..2047379	+	422	46908218	ilvA	LMOf2365_2014	-	threonine dehydratase
1995	 39.86	0	2047572..2048291	+	239	46908219	budA	LMOf2365_2015	-	alpha-acetolactate decarboxylase
1996	 42.09	+1	2048328..2049629	-	433	46908220	pyn	LMOf2365_2016	-	pyrimidine-nucleoside phosphorylase
1997	 39.76	0	2049760..2050770	-	336	46908221	-	LMOf2365_2017	-	LacI family transcription regulator
1998	 41.67	+1	2050850..2051521	-	223	46908222	deoC	LMOf2365_2018	-	deoxyribose-phosphate aldolase
1999	 42.30	+1	2051584..2052531	-	315	46908223	deoR	LMOf2365_2019	-	transcriptional repressor DeoR
2000	 39.09	0	2052629..2053045	-	138	46908224	-	LMOf2365_2020	-	PTS system mannose/fructose/sorbose family IIA subunit
2001	 38.76	0	2053062..2054057	-	331	46908225	-	LMOf2365_2021	-	hypothetical protein
2002	 39.58	0	2054080..2055135	-	351	46908226	-	LMOf2365_2022	-	SIS domain-containing protein
2003	 37.59	0	2055157..2055978	-	273	46908227	-	LMOf2365_2023	-	PTS system mannose/fructose/sorbose family IID subunit
2004	 40.42	0	2055959..2056777	-	272	46908228	-	LMOf2365_2024	-	PTS system, IIC component
2005	 38.03	0	2056800..2057267	-	155	46908229	-	LMOf2365_2025	-	PTS system mannose/fructose/sorbose family IIB subunit
2006	 34.33	0	2057287..2057988	-	233	46908230	-	LMOf2365_2026	-	GntR family transcriptional regulator
2007	 36.89	0	2057990..2058721	-	243	46908231	-	LMOf2365_2027	-	GntR family transcriptional regulator
2008	 27.03	-2	2058763..2058873	-	36	46908232	-	LMOf2365_2028	-	hypothetical protein
2009	 40.56	0	2058894..2059889	-	331	46908233	-	LMOf2365_2029	-	aldo/keto reductase family oxidoreductase
2010	 43.76	+1	2060006..2061703	-	565	46908234	alsS	LMOf2365_2030	-	acetolactate synthase
2011	 37.86	0	2061898..2063355	-	485	46908235	-	LMOf2365_2031	-	ABC transporter, substrate-binding protein
2012	 38.44	0	2063375..2064295	-	306	46908236	-	LMOf2365_2032	-	ABC transporter, permease protein, putative
2013	 38.34	0	2064365..2065303	-	312	46908237	-	LMOf2365_2033	-	ABC transporter, permease protein, putative
2014	 37.64	0	2065407..2066891	-	494	46908238	-	LMOf2365_2034	-	DNA-binding response regulator
2015	 36.95	0	2066891..2068630	-	579	46908239	-	LMOf2365_2035	-	sensor histidine kinase
2016	 38.89	0	2068687..2069298	-	203	46908240	-	LMOf2365_2036	-	hypothetical protein
2017	 40.23	0	2069359..2070663	-	434	46908241	-	LMOf2365_2037	-	hypothetical protein
2018	 41.35	0	2070667..2073324	-	885	46908242	-	LMOf2365_2038	-	glycosy hydrolase family protein
2019	 35.66	0	2073321..2073578	-	85	46908243	-	LMOf2365_2039	-	hypothetical protein
2020	 40.88	0	2073579..2076677	+	1032	46908244	-	LMOf2365_2040	-	alpha-D-mannosidase
2021	 40.30	0	2076746..2076946	-	66	46908245	-	LMOf2365_2041	-	cold-shock domain-contain protein
2022	 38.36	0	2077235..2077930	-	231	46908246	-	LMOf2365_2042	-	PAP2 family protein
2023	 38.28	0	2077944..2078933	-	329	46908247	dapF	LMOf2365_2043	-	diaminopimelate epimerase
2024	 40.74	0	2079045..2081810	-	921	46908248	ileS	LMOf2365_2044	-	isoleucyl-tRNA synthetase
2025	 36.36	0	2082093..2082620	-	175	46908249	divIVA	LMOf2365_2045	-	cell division protein DivIVA
2026	 37.93	0	2082716..2083237	-	173	46908250	-	LMOf2365_2046	-	3H domain-containing protein
2027	 38.84	0	2083242..2084348	-	368	46908251	-	LMOf2365_2047	-	carbon-sulfur lyase
2028	 43.16	+1	2084480..2085934	+	484	46908252	nadB	LMOf2365_2048	-	L-aspartate oxidase
2029	 42.43	+1	2085931..2086776	+	281	46908253	nadC	LMOf2365_2049	-	nicotinate-nucleotide pyrophosphorylase
2030	 41.69	+1	2086773..2087873	+	366	46908254	nadA	LMOf2365_2050	-	quinolinate synthetase
2031	 34.08	-1	2088198..2088464	-	88	46908255	-	LMOf2365_2051	-	IS3 family transposase OrfA
2032	 37.91	0	2088540..2088845	-	101	46908256	-	LMOf2365_2052	-	cell wall surface anchor family protein
2033	 36.63	0	2088873..2089358	-	161	46908257	-	LMOf2365_2053	-	hypothetical protein
2034	 33.12	-1	2089378..2089851	-	157	46908258	-	LMOf2365_2054	-	hypothetical protein
2035	 38.75	0	2089917..2091911	-	664	46908259	-	LMOf2365_2055	-	hypothetical protein
2036	 39.00	0	2092046..2094127	-	693	46908260	-	LMOf2365_2056	-	hypothetical protein
2037	 33.14	-1	2094391..2095929	-	512	46908261	-	LMOf2365_2057	-	hypothetical protein
2038	 35.77	0	2095951..2096730	-	259	46908262	-	LMOf2365_2058	-	methyltransferase, putative
2039	 36.36	0	2096758..2097351	-	197	46908263	-	LMOf2365_2059	-	TetR family transcriptional regulator
2040	 38.87	0	2098525..2099301	-	258	46908264	-	LMOf2365_2060	-	S4 domain-containing protein
2041	 34.71	0	2099426..2099716	-	96	46908265	-	LMOf2365_2061	-	YGGT family protein
2042	 37.69	0	2099739..2100197	-	152	46908266	-	LMOf2365_2062	-	hypothetical protein
2043	 37.54	0	2100201..2100890	-	229	46908267	-	LMOf2365_2063	-	hypothetical protein
2044	 40.82	0	2101009..2102184	-	391	46908268	ftsZ	LMOf2365_2064	-	cell division protein FtsZ
2045	 38.64	0	2102251..2103531	-	426	46908269	ftsA	LMOf2365_2065	-	cell division protein FtsA
2046	 33.58	-1	2103897..2104709	-	270	46908270	-	LMOf2365_2066	-	cell division protein FtsQ
2047	 39.47	0	2104732..2105823	-	363	46908271	murG	LMOf2365_2067	-	N-acetylglucosaminyl transferase
2048	 38.89	0	2105820..2107187	-	455	46908272	murD	LMOf2365_2068	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2049	 37.38	0	2107329..2108291	-	320	46908273	mraY	LMOf2365_2069	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2050	 40.24	0	2108350..2109825	-	491	46908274	murE	LMOf2365_2070	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2051	 38.16	0	2110000..2112255	-	751	46908275	-	LMOf2365_2071	-	penicillin-binding protein
2052	 34.99	0	2112252..2112614	-	120	46908276	-	LMOf2365_2072	-	cell division protein FtsL
2053	 38.87	0	2112631..2113569	-	312	46908277	mraW	LMOf2365_2073	-	S-adenosyl-methyltransferase MraW
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.