IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1918	 41.75	+1	1962757..1963623	+	288	46908142	-	LMOf2365_1938	-	YitT family protein
1919	 43.18	+1	1963613..1964719	-	368	46908143	-	LMOf2365_1939	-	oxidoreductase, FAD-binding
1920	 36.15	0	1965039..1966175	+	378	46908144	-	LMOf2365_1940	-	GGDEF domain-containing protein
1921	 37.59	0	1966201..1967328	+	375	46908145	-	LMOf2365_1941	-	GGDEF domain-containing protein
1922	 33.63	-1	1967325..1968329	+	334	46908146	-	LMOf2365_1942	-	hypothetical protein
1923	 36.84	0	1968348..1969031	+	227	46908147	-	LMOf2365_1943	-	EAL domain-containing protein
1924	 41.73	+1	1969142..1970785	+	547	46908148	sfcA	LMOf2365_1944	-	malate dehydrogenase
1925	 39.38	0	1970788..1971795	+	335	46908149	-	LMOf2365_1945	-	peptidase, putative
1926	 38.34	0	1972010..1974307	+	765	46908150	pfl-2	LMOf2365_1946	-	formate acetyltransferase
1927	 40.68	0	1974355..1975620	-	421	46908151	-	LMOf2365_1947	-	hypothetical protein
1928	 41.08	0	1975730..1976413	-	227	46908152	-	LMOf2365_1948	-	hypothetical protein
1929	 37.02	0	1976500..1977096	-	198	46908153	-	LMOf2365_1949	-	hypothetical protein
1930	 37.73	0	1977184..1977729	-	181	46908154	-	LMOf2365_1950	-	hypothetical protein
1931	 38.84	0	1977765..1979018	-	417	46908155	-	LMOf2365_1951	-	TPR domain-containing protein
1932	 42.27	+1	1979150..1980436	-	428	46908156	aroA	LMOf2365_1952	-	3-phosphoshikimate 1-carboxyvinyltransferase
1933	 41.85	+1	1980450..1981553	-	367	46908157	tyrA	LMOf2365_1953	-	prephenate dehydrogenase
1934	 38.78	0	1981574..1982656	-	360	46908158	hisC	LMOf2365_1954	-	histidinol-phosphate aminotransferase
1935	 41.60	+1	1982656..1983030	-	124	46908159	aroH	LMOf2365_1955	-	chorismate mutase
1936	 41.44	0	1983027..1984124	-	365	46908160	aroB	LMOf2365_1956	-	3-dehydroquinate synthase
1937	 43.70	+1	1984127..1985293	-	388	46908161	aroC	LMOf2365_1957	-	chorismate synthase
1938	 39.41	0	1985497..1985940	-	147	46908162	ndk	LMOf2365_1958	-	nucleoside diphosphate kinase
1939	 38.51	0	1985959..1986924	-	321	46908163	hepB	LMOf2365_1959	-	heptaprenyl diphosphate synthase, component II
1940	 39.08	0	1986935..1987648	-	237	46908164	ubiE	LMOf2365_1960	-	ubiquinone/menaquinone biosynthesis methyltransferase
1941	 39.84	0	1987671..1988438	-	255	46908165	-	LMOf2365_1961	-	heptaprenyl diphosphate synthase component I, putative
1942	 38.77	0	1988495..1989064	-	189	46908166	folE	LMOf2365_1962	-	GTP cyclohydrolase I
1943	 37.32	0	1989300..1989575	-	91	46908167	hup	LMOf2365_1963	-	DNA-binding protein HU
1944	 37.61	0	1989986..1990966	-	326	46908168	-	LMOf2365_1964	-	protein-tyrosine phosphatase, putative
1945	 39.63	0	1991069..1992085	-	338	46908169	gpsA	LMOf2365_1965	-	glycerol-3-phosphate dehydrogenase, NAD-dependent
1946	 38.90	0	1992108..1993418	-	436	46908170	engA	LMOf2365_1966	-	GTP-binding protein EngA
1947	 37.70	0	1993562..1994707	-	381	46908171	rpsA	LMOf2365_1967	-	30S ribosomal protein S1
1948	 39.11	0	1995066..1995740	-	224	46908172	cmk	LMOf2365_1968	-	cytidylate kinase
1949	 37.69	0	1995756..1996718	-	320	46908173	ansA	LMOf2365_1969	-	L-asparaginase
1950	 39.59	0	1996799..1997533	-	244	46908174	-	LMOf2365_1970	-	lysM domain-containing protein
1951	 36.68	0	1997853..1999256	-	467	46908175	-	LMOf2365_1971	-	ATP-dependent DNA helicase RecQ, putative
1952	 36.81	0	1999253..2000260	-	335	46908176	-	LMOf2365_1972	-	hypothetical protein
1953	 36.44	0	2000415..2000639	+	74	46908177	-	LMOf2365_1973	-	ferredoxin, 4Fe-4S
1954	 35.58	0	2000703..2006714	-	2003	46908178	-	LMOf2365_1974	-	cell wall surface anchor family protein
1955	 33.33	-1	2006980..2007591	-	203	46908179	-	LMOf2365_1975	-	hypothetical protein
1956	 38.73	0	2008033..2008551	-	172	46908180	-	LMOf2365_1976	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1957	 35.46	0	2008567..2010357	-	596	46908181	resE	LMOf2365_1977	-	sensor histidine kinase ResE
1958	 40.73	0	2010458..2011174	-	238	46908182	resD	LMOf2365_1978	-	DNA-binding response regulator ResD
1959	 36.46	0	2011357..2012091	-	244	46908183	rluB	LMOf2365_1979	-	ribosomal large subunit pseudouridine synthase B
1960	 41.04	0	2012094..2012690	-	198	46908184	-	LMOf2365_1980	-	hypothetical protein
1961	 35.73	0	2012687..2013436	-	249	46908185	scpA	LMOf2365_1981	-	segregation and condensation protein A
1962	 40.27	0	2013452..2014762	-	436	46908186	lysA	LMOf2365_1982	-	diaminopimelate decarboxylase
1963	 39.68	0	2014943..2015761	-	272	46908187	-	LMOf2365_1983	-	purine nucleoside phosphorylase
1964	 38.99	0	2015780..2016964	-	394	46908188	deoB	LMOf2365_1984	-	phosphopentomutase
1965	 39.04	0	2016993..2017886	-	297	46908189	xerD	LMOf2365_1985	-	integrase/recombinase XerD
1966	 37.97	0	2018041..2018493	-	150	46908190	-	LMOf2365_1986	-	FUR family transcriptional regulator
1967	 42.33	+1	2018735..2019757	-	340	46908191	-	LMOf2365_1987	-	iron compound ABC transporter, permease protein
1968	 44.25	+1	2019757..2020782	-	341	46908192	-	LMOf2365_1988	-	iron compound ABC transporter, permease protein
1969	 39.92	0	2020884..2021825	-	313	46908193	-	LMOf2365_1989	-	iron compound ABC transporter, iron compound-binding protein
1970	 39.88	0	2021990..2022814	+	274	46908194	-	LMOf2365_1990	-	iron compound ABC transporter, ATP-binding protein
1971	 42.14	+1	2022804..2023802	+	332	46908195	-	LMOf2365_1991	-	pyridine nucleotide-disulfide oxidoreductase family protein
1972	 39.13	0	2023819..2024439	-	206	46908196	-	LMOf2365_1992	-	TetR family transcriptional regulator
1973	 38.48	0	2024439..2025254	-	271	46908197	-	LMOf2365_1993	-	ABC transporter, permease protein, putative
1974	 37.05	0	2025251..2026138	-	295	46908198	-	LMOf2365_1994	-	ABC transporter, ATP-binding protein
1975	 39.43	0	2026612..2027169	-	185	46908199	-	LMOf2365_1995	-	MutT/nudix family protein
1976	 34.70	0	2027443..2028102	+	219	46908200	-	LMOf2365_1996	-	hypothetical protein
1977	 38.92	0	2028080..2029279	+	399	46908201	-	LMOf2365_1997	-	tellurite resistance protein, putative
1978	 39.50	0	2029316..2030386	-	356	46908202	-	LMOf2365_1998	-	DNA-damage-inducible protein P, putative
1979	 35.48	0	2030495..2031286	-	263	46908203	-	LMOf2365_1999	-	short chain dehydrogenase/reductase family oxidoreductase
1980	 38.22	0	2031291..2032211	-	306	46908204	-	LMOf2365_2000	-	metallo-beta-lactamase family protein
1981	 27.78	-2	2032318..2032443	-	41	46908205	-	LMOf2365_2001	-	hypothetical protein
1982	 40.24	0	2032512..2033987	+	491	46908206	zwf	LMOf2365_2002	-	glucose-6-phosphate 1-dehydrogenase
1983	 34.95	0	2034106..2034537	+	143	46908207	-	LMOf2365_2003	-	hypothetical protein
1984	 39.30	0	2034689..2035174	-	161	46908208	-	LMOf2365_2004	-	hypothetical protein
1985	 37.12	0	2035147..2035674	-	175	46908209	-	LMOf2365_2005	-	acetyltransferase
1986	 43.24	+1	2036365..2038059	+	564	46908210	ilvD	LMOf2365_2006	-	dihydroxy-acid dehydratase
1987	 43.21	+1	2038077..2039798	+	573	46908211	ilvB	LMOf2365_2007	-	acetolactate synthase, large subunit, biosynthetic type
1988	 44.11	+1	2039799..2040290	+	163	46908212	ilvN	LMOf2365_2008	-	acetolactate synthase 3 regulatory subunit
1989	 40.76	0	2040389..2041384	+	331	46908213	ilvC	LMOf2365_2009	-	ketol-acid reductoisomerase
1990	 41.85	+1	2041542..2043080	+	512	46908214	leuA	LMOf2365_2010	-	2-isopropylmalate synthase
1991	 43.21	+1	2043082..2044134	+	350	46908215	leuB	LMOf2365_2011	-	3-isopropylmalate dehydrogenase
1992	 42.69	+1	2044136..2045524	+	462	46908216	leuC	LMOf2365_2012	-	isopropylmalate isomerase large subunit
1993	 40.21	0	2045511..2046092	+	193	46908217	leuD	LMOf2365_2013	-	isopropylmalate isomerase small subunit
1994	 40.98	0	2046111..2047379	+	422	46908218	ilvA	LMOf2365_2014	-	threonine dehydratase
1995	 39.86	0	2047572..2048291	+	239	46908219	budA	LMOf2365_2015	-	alpha-acetolactate decarboxylase
1996	 42.09	+1	2048328..2049629	-	433	46908220	pyn	LMOf2365_2016	-	pyrimidine-nucleoside phosphorylase
1997	 39.76	0	2049760..2050770	-	336	46908221	-	LMOf2365_2017	-	LacI family transcription regulator
1998	 41.67	+1	2050850..2051521	-	223	46908222	deoC	LMOf2365_2018	-	deoxyribose-phosphate aldolase
1999	 42.30	+1	2051584..2052531	-	315	46908223	deoR	LMOf2365_2019	-	transcriptional repressor DeoR
2000	 39.09	0	2052629..2053045	-	138	46908224	-	LMOf2365_2020	-	PTS system mannose/fructose/sorbose family IIA subunit
2001	 38.76	0	2053062..2054057	-	331	46908225	-	LMOf2365_2021	-	hypothetical protein
2002	 39.58	0	2054080..2055135	-	351	46908226	-	LMOf2365_2022	-	SIS domain-containing protein
2003	 37.59	0	2055157..2055978	-	273	46908227	-	LMOf2365_2023	-	PTS system mannose/fructose/sorbose family IID subunit
2004	 40.42	0	2055959..2056777	-	272	46908228	-	LMOf2365_2024	-	PTS system, IIC component
2005	 38.03	0	2056800..2057267	-	155	46908229	-	LMOf2365_2025	-	PTS system mannose/fructose/sorbose family IIB subunit
2006	 34.33	0	2057287..2057988	-	233	46908230	-	LMOf2365_2026	-	GntR family transcriptional regulator
2007	 36.89	0	2057990..2058721	-	243	46908231	-	LMOf2365_2027	-	GntR family transcriptional regulator
2008	 27.03	-2	2058763..2058873	-	36	46908232	-	LMOf2365_2028	-	hypothetical protein
2009	 40.56	0	2058894..2059889	-	331	46908233	-	LMOf2365_2029	-	aldo/keto reductase family oxidoreductase
2010	 43.76	+1	2060006..2061703	-	565	46908234	alsS	LMOf2365_2030	-	acetolactate synthase
2011	 37.86	0	2061898..2063355	-	485	46908235	-	LMOf2365_2031	-	ABC transporter, substrate-binding protein
2012	 38.44	0	2063375..2064295	-	306	46908236	-	LMOf2365_2032	-	ABC transporter, permease protein, putative
2013	 38.34	0	2064365..2065303	-	312	46908237	-	LMOf2365_2033	-	ABC transporter, permease protein, putative
2014	 37.64	0	2065407..2066891	-	494	46908238	-	LMOf2365_2034	-	DNA-binding response regulator
2015	 36.95	0	2066891..2068630	-	579	46908239	-	LMOf2365_2035	-	sensor histidine kinase
2016	 38.89	0	2068687..2069298	-	203	46908240	-	LMOf2365_2036	-	hypothetical protein
2017	 40.23	0	2069359..2070663	-	434	46908241	-	LMOf2365_2037	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.