IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1862	 38.78	0	1910401..1910694	-	97	46908086	-	LMOf2365_1882	-	hypothetical protein
1863	 37.82	0	1910817..1911641	-	274	46908087	-	LMOf2365_1883	-	D-alanyl-D-alanine carboxypeptidase, putative
1864	 37.61	0	1911699..1912400	-	233	46908088	deoD	LMOf2365_1884	-	purine nucleoside phosphorylase
1865	 35.90	0	1912412..1912645	-	77	46908089	-	LMOf2365_1885	-	hypothetical protein
1866	 40.18	0	1912708..1913613	-	301	46908090	-	LMOf2365_1886	-	Gfo/Idh/MocA family oxidoreductase
1867	 40.41	0	1913696..1914133	-	145	46908091	-	LMOf2365_1887	-	methionine sulfoxide reductase B
1868	 39.51	0	1914140..1914673	-	177	46908092	msrA	LMOf2365_1888	-	methionine sulfoxide reductase A
1869	 37.07	0	1914709..1915323	-	204	46908093	-	LMOf2365_1889	-	hypothetical protein
1870	 34.86	0	1915339..1916124	-	261	46908094	-	LMOf2365_1890	-	lipase/acylhydrolase, putative
1871	 36.79	0	1916139..1916978	-	279	46908095	-	LMOf2365_1892	-	DegV family protein
1872	 38.70	0	1917157..1917789	+	210	46908096	hlY-III	LMOf2365_1893	-	hemolysin III
1873	 40.94	0	1917911..1918528	+	205	46908097	-	LMOf2365_1894	-	CBS domain-containing protein
1874	 40.71	0	1918541..1919353	+	270	46908098	-	LMOf2365_1895	-	hypothetical protein
1875	 42.39	+1	1919372..1922011	+	879	46908099	ppdK	LMOf2365_1896	-	pyruvate phosphate dikinase
1876	 34.92	0	1922061..1922438	-	125	46908100	-	LMOf2365_1897	-	hypothetical protein
1877	 39.02	0	1922442..1923425	-	327	46908101	-	LMOf2365_1898	-	hypothetical protein
1878	 37.18	0	1923519..1924142	-	207	46908102	-	LMOf2365_1899	-	DedA family protein
1879	 36.07	0	1924279..1925631	-	450	46908103	-	LMOf2365_1900	-	serine protease, putative
1880	 40.61	0	1925886..1927397	-	503	46908104	-	LMOf2365_1901	-	phosphoglucomutase/phosphomannomutase family protein
1881	 40.79	0	1927466..1928296	-	276	46908105	-	LMOf2365_1902	-	hypothetical protein
1882	 37.27	0	1928394..1928876	-	160	46908106	folA	LMOf2365_1903	-	dihydrofolate reductase
1883	 38.73	0	1928892..1929836	-	314	46908107	thyA	LMOf2365_1904	-	thymidylate synthase
1884	 41.20	0	1929849..1931741	-	630	46908108	-	LMOf2365_1905	-	ABC transporter, ATP-binding protein
1885	 41.53	+1	1931861..1933543	-	560	46908109	fhs	LMOf2365_1906	-	formate--tetrahydrofolate ligase
1886	 38.46	0	1933701..1934129	-	142	46908110	-	LMOf2365_1907	-	manganese transport transcriptional regulator
1887	 41.79	+1	1934494..1934694	+	66	46908111	-	LMOf2365_1908	-	cold-shock domain-contain protein
1888	 39.05	0	1934818..1935219	+	133	46908112	rnhA	LMOf2365_1909	-	ribonuclease HI
1889	 40.66	0	1935238..1936110	-	290	46908113	-	LMOf2365_1910	-	5'-3' exonuclease family protein
1890	 48.52	+2	1936188..1936457	-	89	46908114	rpsN	LMOf2365_1911	-	30S ribosomal protein S14
1891	 41.83	+1	1936580..1937638	-	352	46908115	-	LMOf2365_1912	-	chitinase
1892	 40.90	0	1937830..1939137	-	435	46908116	pbuX	LMOf2365_1913	-	xanthine permease
1893	 37.65	0	1939144..1939722	-	192	46908117	xpt	LMOf2365_1914	-	xanthine phosphoribosyltransferase
1894	 36.94	0	1939950..1941473	-	507	46908118	-	LMOf2365_1915	-	thermostable carboxypeptidase
1895	 41.69	+1	1941478..1942626	-	382	46908119	-	LMOf2365_1916	-	hypothetical protein
1896	 44.64	+1	1942702..1943037	-	111	46908120	-	LMOf2365_1916.5	-	hypothetical protein
1897	 36.84	0	1943206..1943547	-	113	46908121	-	LMOf2365_1917	-	hypothetical protein
1898	 37.73	0	1943679..1944224	-	181	46908122	-	LMOf2365_1918	-	hypothetical protein
1899	 33.88	-1	1944221..1944586	-	121	46908123	-	LMOf2365_1919	-	hypothetical protein
1900	 37.13	0	1944833..1945438	+	201	46908124	recU	LMOf2365_1920	-	Holliday junction-specific endonuclease
1901	 39.81	0	1945470..1947953	+	827	46908125	-	LMOf2365_1921	-	penicillin-binding protein
1902	 35.37	0	1947996..1948487	-	163	46908126	-	LMOf2365_1922	-	hypothetical protein
1903	 38.48	0	1948480..1949139	-	219	46908127	nth	LMOf2365_1923	-	endonuclease III
1904	 38.19	0	1949150..1949869	-	239	46908128	dnaD	LMOf2365_1924	-	DNA replication protein DnaD
1905	 39.98	0	1950019..1951311	-	430	46908129	asnC	LMOf2365_1925	-	asparaginyl-tRNA synthetase
1906	 37.65	0	1951325..1952506	-	393	46908130	-	LMOf2365_1926	-	aspartate aminotransferase
1907	 33.93	-1	1952529..1953035	-	168	46908131	-	LMOf2365_1927	-	hypothetical protein
1908	 38.32	0	1953158..1955944	-	928	46908132	-	LMOf2365_1928	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
1909	 36.20	0	1956041..1956424	-	127	46908133	panD	LMOf2365_1929	-	aspartate alpha-decarboxylase
1910	 38.81	0	1956428..1957285	-	285	46908134	panC	LMOf2365_1930	-	pantoate--beta-alanine ligase
1911	 42.57	+1	1957289..1958122	-	277	46908135	panB	LMOf2365_1931	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1912	 36.71	0	1958289..1958762	-	157	46908136	-	LMOf2365_1932	-	bacteriocin transport accessory protein, putative
1913	 39.88	0	1958910..1959887	-	325	46908137	birA	LMOf2365_1933	-	birA bifunctional protein
1914	 38.92	0	1959877..1961058	-	393	46908138	-	LMOf2365_1934	-	tRNA CCA-pyrophosphorylase
1915	 42.47	+1	1961073..1961477	-	134	46908139	mgsA	LMOf2365_1935	-	methylglyoxal synthase
1916	 38.89	0	1961493..1962284	-	263	46908140	dapB	LMOf2365_1936	-	dihydrodipicolinate reductase
1917	 39.29	0	1962281..1962616	-	111	46908141	-	LMOf2365_1937	-	hypothetical protein
1918	 41.75	+1	1962757..1963623	+	288	46908142	-	LMOf2365_1938	-	YitT family protein
1919	 43.18	+1	1963613..1964719	-	368	46908143	-	LMOf2365_1939	-	oxidoreductase, FAD-binding
1920	 36.15	0	1965039..1966175	+	378	46908144	-	LMOf2365_1940	-	GGDEF domain-containing protein
1921	 37.59	0	1966201..1967328	+	375	46908145	-	LMOf2365_1941	-	GGDEF domain-containing protein
1922	 33.63	-1	1967325..1968329	+	334	46908146	-	LMOf2365_1942	-	hypothetical protein
1923	 36.84	0	1968348..1969031	+	227	46908147	-	LMOf2365_1943	-	EAL domain-containing protein
1924	 41.73	+1	1969142..1970785	+	547	46908148	sfcA	LMOf2365_1944	-	malate dehydrogenase
1925	 39.38	0	1970788..1971795	+	335	46908149	-	LMOf2365_1945	-	peptidase, putative
1926	 38.34	0	1972010..1974307	+	765	46908150	pfl-2	LMOf2365_1946	-	formate acetyltransferase
1927	 40.68	0	1974355..1975620	-	421	46908151	-	LMOf2365_1947	-	hypothetical protein
1928	 41.08	0	1975730..1976413	-	227	46908152	-	LMOf2365_1948	-	hypothetical protein
1929	 37.02	0	1976500..1977096	-	198	46908153	-	LMOf2365_1949	-	hypothetical protein
1930	 37.73	0	1977184..1977729	-	181	46908154	-	LMOf2365_1950	-	hypothetical protein
1931	 38.84	0	1977765..1979018	-	417	46908155	-	LMOf2365_1951	-	TPR domain-containing protein
1932	 42.27	+1	1979150..1980436	-	428	46908156	aroA	LMOf2365_1952	-	3-phosphoshikimate 1-carboxyvinyltransferase
1933	 41.85	+1	1980450..1981553	-	367	46908157	tyrA	LMOf2365_1953	-	prephenate dehydrogenase
1934	 38.78	0	1981574..1982656	-	360	46908158	hisC	LMOf2365_1954	-	histidinol-phosphate aminotransferase
1935	 41.60	+1	1982656..1983030	-	124	46908159	aroH	LMOf2365_1955	-	chorismate mutase
1936	 41.44	0	1983027..1984124	-	365	46908160	aroB	LMOf2365_1956	-	3-dehydroquinate synthase
1937	 43.70	+1	1984127..1985293	-	388	46908161	aroC	LMOf2365_1957	-	chorismate synthase
1938	 39.41	0	1985497..1985940	-	147	46908162	ndk	LMOf2365_1958	-	nucleoside diphosphate kinase
1939	 38.51	0	1985959..1986924	-	321	46908163	hepB	LMOf2365_1959	-	heptaprenyl diphosphate synthase, component II
1940	 39.08	0	1986935..1987648	-	237	46908164	ubiE	LMOf2365_1960	-	ubiquinone/menaquinone biosynthesis methyltransferase
1941	 39.84	0	1987671..1988438	-	255	46908165	-	LMOf2365_1961	-	heptaprenyl diphosphate synthase component I, putative
1942	 38.77	0	1988495..1989064	-	189	46908166	folE	LMOf2365_1962	-	GTP cyclohydrolase I
1943	 37.32	0	1989300..1989575	-	91	46908167	hup	LMOf2365_1963	-	DNA-binding protein HU
1944	 37.61	0	1989986..1990966	-	326	46908168	-	LMOf2365_1964	-	protein-tyrosine phosphatase, putative
1945	 39.63	0	1991069..1992085	-	338	46908169	gpsA	LMOf2365_1965	-	glycerol-3-phosphate dehydrogenase, NAD-dependent
1946	 38.90	0	1992108..1993418	-	436	46908170	engA	LMOf2365_1966	-	GTP-binding protein EngA
1947	 37.70	0	1993562..1994707	-	381	46908171	rpsA	LMOf2365_1967	-	30S ribosomal protein S1
1948	 39.11	0	1995066..1995740	-	224	46908172	cmk	LMOf2365_1968	-	cytidylate kinase
1949	 37.69	0	1995756..1996718	-	320	46908173	ansA	LMOf2365_1969	-	L-asparaginase
1950	 39.59	0	1996799..1997533	-	244	46908174	-	LMOf2365_1970	-	lysM domain-containing protein
1951	 36.68	0	1997853..1999256	-	467	46908175	-	LMOf2365_1971	-	ATP-dependent DNA helicase RecQ, putative
1952	 36.81	0	1999253..2000260	-	335	46908176	-	LMOf2365_1972	-	hypothetical protein
1953	 36.44	0	2000415..2000639	+	74	46908177	-	LMOf2365_1973	-	ferredoxin, 4Fe-4S
1954	 35.58	0	2000703..2006714	-	2003	46908178	-	LMOf2365_1974	-	cell wall surface anchor family protein
1955	 33.33	-1	2006980..2007591	-	203	46908179	-	LMOf2365_1975	-	hypothetical protein
1956	 38.73	0	2008033..2008551	-	172	46908180	-	LMOf2365_1976	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1957	 35.46	0	2008567..2010357	-	596	46908181	resE	LMOf2365_1977	-	sensor histidine kinase ResE
1958	 40.73	0	2010458..2011174	-	238	46908182	resD	LMOf2365_1978	-	DNA-binding response regulator ResD
1959	 36.46	0	2011357..2012091	-	244	46908183	rluB	LMOf2365_1979	-	ribosomal large subunit pseudouridine synthase B
1960	 41.04	0	2012094..2012690	-	198	46908184	-	LMOf2365_1980	-	hypothetical protein
1961	 35.73	0	2012687..2013436	-	249	46908185	scpA	LMOf2365_1981	-	segregation and condensation protein A
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.