IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1686	 44.50	+1	1715689..1716861	-	390	46907910	-	LMOf2365_1703	-	cystathionine beta-lyase
1687	 43.11	+1	1716854..1717978	-	374	46907911	-	LMOf2365_1704	-	cystathionine beta/gamma-lyase
1688	 39.95	0	1718000..1720297	-	765	46907912	metE	LMOf2365_1705	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1689	 38.44	0	1720587..1721762	-	391	46907913	-	LMOf2365_1706	-	major facilitator family transporter
1690	 36.24	0	1729190..1729636	-	148	46907914	-	LMOf2365_1707	-	peroxide operon transcriptional regulator
1691	 34.39	0	1729719..1730660	-	313	46907915	-	LMOf2365_1708	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1692	 42.49	+1	1730805..1732103	+	432	46907916	gsaB	LMOf2365_1709	-	glutamate-1-semialdehyde aminotransferase
1693	 34.62	0	1732209..1733297	+	362	46907917	-	LMOf2365_1710	-	hypothetical protein
1694	 39.39	0	1733339..1733866	-	175	46907918	-	LMOf2365_1711	-	hypothetical protein
1695	 38.96	0	1734021..1734767	-	248	46907919	-	LMOf2365_1712	-	enoyl-(acyl carrier protein) reductase
1696	 38.66	0	1734771..1735859	-	362	46907920	mutY	LMOf2365_1713	-	A/G-specific adenine glycosylase
1697	 37.31	0	1736068..1737048	+	326	46907921	-	LMOf2365_1714	-	hypothetical protein
1698	 37.79	0	1737077..1737547	-	156	46907922	-	LMOf2365_1715	-	dUTPase family protein
1699	 41.03	0	1737550..1737783	-	77	46907923	-	LMOf2365_1716	-	hypothetical protein
1700	 36.91	0	1737785..1738594	-	269	46907924	recX	LMOf2365_1717	-	recombination regulator RecX
1701	 36.40	0	1738683..1739594	+	303	46907925	-	LMOf2365_1718	-	hypothetical protein
1702	 36.18	0	1739615..1742212	-	865	46907926	-	LMOf2365_1719	-	hypothetical protein
1703	 33.04	-1	1742239..1742913	-	224	46907927	-	LMOf2365_1720	-	hypothetical protein
1704	 39.96	0	1743121..1744086	+	321	46907928	-	LMOf2365_1721	-	cation efflux family protein
1705	 37.75	0	1744131..1744673	-	180	46907929	-	LMOf2365_1722	-	acetyltransferase
1706	 39.31	0	1744863..1745765	+	300	46907930	-	LMOf2365_1723	-	methyl-accepting chemotaxis protein
1707	 37.20	0	1745793..1745999	+	68	46907931	-	LMOf2365_1724	-	hypothetical protein
1708	 39.27	0	1746039..1746392	-	117	46907932	-	LMOf2365_1725	-	hypothetical protein
1709	 34.33	0	1746421..1746822	-	133	46907933	-	LMOf2365_1726	-	glyoxalase family protein
1710	 41.52	+1	1746837..1748216	-	459	46907934	-	LMOf2365_1727	-	RNA methyltransferase
1711	 37.27	0	1748281..1748661	-	126	46907935	-	LMOf2365_1728	-	hypothetical protein
1712	 36.43	0	1748768..1749412	+	214	46907936	-	LMOf2365_1729	-	deoxynucleoside kinase family protein
1713	 37.70	0	1749442..1750311	-	289	46907937	-	LMOf2365_1730	-	ribonuclease BN, putative
1714	 34.68	0	1750401..1750622	+	73	46907938	-	LMOf2365_1731	-	hypothetical protein
1715	 41.13	0	1750642..1751436	-	264	46907939	-	LMOf2365_1732	-	aminoglycoside N3-acetyltransferase
1716	 39.92	0	1751574..1752332	-	252	46907940	map	LMOf2365_1733	-	methionine aminopeptidase
1717	 37.58	0	1752520..1752966	+	148	46907941	-	LMOf2365_1734	-	flavodoxin
1718	 40.39	0	1753104..1754336	+	410	46907942	-	LMOf2365_1735	-	aminopeptidase
1719	 38.57	0	1754440..1755699	+	419	46907943	-	LMOf2365_1736	-	major facilitator family transporter
1720	 30.82	-1	1755674..1755832	+	52	46907944	-	LMOf2365_1737	-	hypothetical protein
1721	 43.30	+1	1755917..1756909	+	330	46907945	-	LMOf2365_1738	-	cell shape-determining protein
1722	 32.29	-1	1757183..1757755	-	190	46907946	-	LMOf2365_1739	-	hypothetical protein
1723	 32.13	-1	1757846..1758511	-	221	46907947	-	LMOf2365_1740	-	hypothetical protein
1724	 34.53	0	1758699..1759283	+	194	46907948	-	LMOf2365_1741	-	TetR family transcriptional regulator
1725	 39.21	0	1759375..1760463	-	362	46907949	-	LMOf2365_1742	-	hypothetical protein
1726	 38.94	0	1760485..1760787	-	100	46907950	-	LMOf2365_1743	-	PTS system, beta-glucoside-specific, IIA component
1727	 39.16	0	1760857..1761165	-	102	46907951	-	LMOf2365_1744	-	PTS system, beta-glucoside-specific, IIB component
1728	 38.83	0	1764136..1765464	-	442	46907952	-	LMOf2365_1746	-	helicase domain-containing protein
1729	 34.88	0	1765507..1766280	-	257	46907953	-	LMOf2365_1747	-	hypothetical protein
1730	 35.24	0	1766273..1766953	-	226	46907954	-	LMOf2365_1748	-	ABC transporter, ATP-binding protein
1731	 39.84	0	1766946..1767314	-	122	46907955	-	LMOf2365_1749	-	GntR family transcriptional regulator
1732	 38.62	0	1767435..1768418	-	327	46907956	-	LMOf2365_1750	-	Gfo/Idh/MocA family oxidoreductase
1733	 40.79	0	1768478..1769443	-	321	46907957	-	LMOf2365_1751	-	LacI family transcription regulator
1734	 39.35	0	1769491..1772745	-	1084	46907958	-	LMOf2365_1752	-	hypothetical protein
1735	 41.39	0	1772748..1774919	-	723	46907959	bglX-1	LMOf2365_1753	-	beta-glucosidase
1736	 38.71	0	1775348..1776592	+	414	46907960	-	LMOf2365_1754	-	ABC transporter, substrate-binding protein
1737	 37.81	0	1776653..1777546	+	297	46907961	-	LMOf2365_1755	-	ABC transporter, permease protein
1738	 37.67	0	1777564..1778394	+	276	46907962	-	LMOf2365_1756	-	ABC transporter, permease protein
1739	 43.81	+1	1778439..1779908	-	489	46907963	gltD	LMOf2365_1757	-	glutamate synthase subunit beta
1740	 41.45	0	1779923..1784515	-	1530	46907964	gltB	LMOf2365_1758	-	glutamate synthase, large subunit
1741	 40.20	0	1784708..1785595	+	295	46907965	gltC	LMOf2365_1759	-	transcriptional regulator GltC
1742	 41.43	0	1785592..1786110	-	172	46907966	-	LMOf2365_1760	-	acetyltransferase
1743	 41.30	0	1786113..1787216	-	367	46907967	-	LMOf2365_1761	-	alcohol dehydrogenase, iron-dependent
1744	 34.19	-1	1787311..1788126	-	271	46907968	-	LMOf2365_1762	-	amino acid ABC transporter, amino acid-binding protein
1745	 37.04	0	1788128..1788775	-	215	46907969	-	LMOf2365_1763	-	amino acid ABC transporter, ATP-binding protein
1746	 36.45	0	1788786..1789427	-	213	46907970	-	LMOf2365_1764	-	amino acid ABC transporter, permease protein
1747	 34.01	-1	1789825..1790865	-	346	46907971	-	LMOf2365_1766	-	sensor histidine kinase
1748	 39.08	0	1790887..1792626	-	579	46907972	ade	LMOf2365_1767	-	adenine deaminase
1749	 35.08	0	1792646..1793104	-	152	46907973	-	LMOf2365_1768	-	hypothetical protein
1750	 36.64	0	1793125..1794000	-	291	46907974	-	LMOf2365_1769	-	hypothetical protein
1751	 32.30	-1	1794070..1794747	-	225	46907975	-	LMOf2365_1770	-	DNA-binding response regulator
1752	 32.22	-1	1794810..1796789	-	659	46907976	-	LMOf2365_1771	-	ABC transporter, permease protein
1753	 38.15	0	1796779..1797546	-	255	46907977	-	LMOf2365_1772	-	ABC transporter, ATP-binding protein
1754	 35.10	0	1797675..1798184	-	169	46907978	-	LMOf2365_1773	-	hypothetical protein
1755	 36.71	0	1798408..1798881	+	157	46907979	aroK	LMOf2365_1774	-	shikimate kinase
1756	 37.12	0	1798912..1799466	-	184	46907980	-	LMOf2365_1775	-	hypothetical protein
1757	 38.99	0	1799801..1801162	-	453	46907981	-	LMOf2365_1776	-	RNA methyltransferase
1758	 31.75	-1	1801186..1801941	-	251	46907982	-	LMOf2365_1777	-	hypothetical protein
1759	 38.16	0	1802089..1803021	-	310	46907983	-	LMOf2365_1778	-	putative lipid kinase
1760	 38.16	0	1803167..1804597	-	476	46907984	gatB	LMOf2365_1779	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1761	 37.74	0	1804609..1806060	-	483	46907985	gatA	LMOf2365_1780	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1762	 37.41	0	1806084..1806377	-	97	46907986	gatC	LMOf2365_1781	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1763	 36.11	0	1806502..1807617	-	371	46907987	-	LMOf2365_1782	-	putative lipoprotein
1764	 40.72	0	1807614..1809629	-	671	46907988	ligA	LMOf2365_1783	-	NAD-dependent DNA ligase LigA
1765	 39.96	0	1809655..1811856	-	733	46907989	pcrA	LMOf2365_1784	-	ATP-dependent DNA helicase PcrA
1766	 37.76	0	1811915..1812592	-	225	46907990	-	LMOf2365_1785	-	geranylgeranylglyceryl phosphate synthase-like protein
1767	 40.19	0	1812799..1814154	+	451	46907991	-	LMOf2365_1786	-	sodium:neurotransmitter symporter family protein
1768	 35.29	0	1814197..1814451	-	84	46907992	-	LMOf2365_1787	-	hypothetical protein
1769	 35.02	0	1814468..1814764	-	98	46907993	-	LMOf2365_1788	-	hypothetical protein
1770	 40.54	0	1814903..1816165	-	420	46907994	purD	LMOf2365_1789	-	phosphoribosylamine--glycine ligase
1771	 40.20	0	1816190..1817719	-	509	46907995	purH	LMOf2365_1790	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1772	 38.45	0	1817725..1818291	-	188	46907996	purN	LMOf2365_1791	-	phosphoribosylglycinamide formyltransferase
1773	 42.67	+1	1818288..1819337	-	349	46907997	purM	LMOf2365_1792	-	phosphoribosylaminoimidazole synthetase
1774	 41.74	+1	1819356..1820783	-	475	46907998	purF	LMOf2365_1793	-	amidophosphoribosyltransferase
1775	 42.57	+1	1820768..1822987	-	739	46907999	purL	LMOf2365_1794	-	phosphoribosylformylglycinamidine synthase II
1776	 41.52	+1	1822980..1823663	-	227	46908000	purQ	LMOf2365_1795	-	phosphoribosylformylglycinamidine synthase subunit I
1777	 34.96	0	1823667..1823912	-	81	46908001	purS	LMOf2365_1796	-	phosphoribosylformylglycinamidine synthase subunit PurS
1778	 38.66	0	1823924..1824637	-	237	46908002	purC	LMOf2365_1797	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1779	 39.91	0	1824718..1826010	-	430	46908003	purB	LMOf2365_1798	-	adenylosuccinate lyase
1780	 37.74	0	1826029..1827162	-	377	46908004	purK	LMOf2365_1799	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1781	 41.51	+1	1827146..1827634	-	162	46908005	purE	LMOf2365_1800	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1782	 33.14	-1	1827840..1828364	-	174	46908006	-	LMOf2365_1801	-	hypothetical protein
1783	 36.12	0	1833750..1834358	-	202	46908007	-	LMOf2365_1802	-	HD domain-containing protein
1784	 38.42	0	1834412..1835197	+	261	46908008	-	LMOf2365_1803	-	ABC transporter, ATP-binding protein
1785	 34.19	-1	1835259..1835609	+	116	46908009	-	LMOf2365_1804	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.