IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.91   STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.54	0	319..1674	+	451	46906225	dnaA	LMOf2365_0001	-	chromosomal replication initiation protein
2	 34.29	-1	1868..3013	+	381	46906226	dnaN	LMOf2365_0002	-	DNA polymerase III subunit beta
3	 39.43	0	3121..4464	+	447	46906227	-	LMOf2365_0003	-	MATE efflux family protein
4	 40.54	0	4644..4865	+	73	46906228	-	LMOf2365_0004	-	hypothetical protein
5	 39.17	0	4869..5981	+	370	46906229	recF	LMOf2365_0005	-	recombination protein F
6	 40.29	0	6030..7970	+	646	46906230	gyrB	LMOf2365_0006	-	DNA gyrase, B subunit
7	 40.17	0	8065..10593	+	842	46906231	gyrA	LMOf2365_0007	-	DNA gyrase, A subunit
8	 37.49	0	10727..12241	+	504	46906232	cls-1	LMOf2365_0008	-	cardiolipin synthetase
9	 33.53	-1	12257..12775	+	172	46906233	speG	LMOf2365_0009	-	spermidine N1-acetyltransferase
10	 31.62	-1	12779..12895	+	38	46906234	-	LMOf2365_0010	-	hypothetical protein
11	 38.39	0	12917..13885	+	322	46906235	-	LMOf2365_0011	-	mevalonate kinase
12	 40.74	0	13842..14813	+	323	46906236	mvaD	LMOf2365_0012	-	diphosphomevalonate decarboxylase
13	 39.31	0	14803..15873	+	356	46906237	-	LMOf2365_0013	-	phosphomevalonate kinase
14	 27.69	-2	15966..16160	-	64	46906238	-	LMOf2365_0014	-	hypothetical protein
15	 38.21	0	18301..19407	+	368	46906239	qoxA	LMOf2365_0016	-	quinol oxidase AA3, subunit II
16	 40.61	0	19426..21405	+	659	46906240	qoxB	LMOf2365_0017	-	quinol oxidase AA3, subunit I
17	 38.24	0	21393..22004	+	203	46906241	qoxC	LMOf2365_0018	-	quinol oxidase AA3, subunit III
18	 37.84	0	22006..22338	+	110	46906242	qoxD	LMOf2365_0019	-	quinol oxidase AA3, subunit IV
19	 34.58	0	22389..23507	-	372	46906243	-	LMOf2365_0020	-	hypothetical protein
20	 39.68	0	23733..25166	+	477	46906244	-	LMOf2365_0021	-	glycosy hydrolase family protein
21	 38.56	0	25213..26034	-	273	46906245	-	LMOf2365_0022	-	hypothetical protein
22	 33.47	-1	26275..27015	+	246	46906246	-	LMOf2365_0023	-	GntR family transcriptional regulator
23	 41.29	0	27031..27432	+	133	46906247	-	LMOf2365_0024	-	PTS system, fructose-specific, IIA component
24	 39.47	0	27432..27920	+	162	46906248	-	LMOf2365_0025	-	PTS system mannose/fructose/sorbose family IIB subunit
25	 43.03	+1	27943..28746	+	267	46906249	-	LMOf2365_0026	-	PTS system, mannose-specific, IIC component, putative
26	 39.78	0	28727..29548	+	273	46906250	-	LMOf2365_0027	-	PTS system mannose/fructose/sorbose family IID subunit
27	 40.71	0	29576..30280	+	234	46906251	-	LMOf2365_0028	-	hypothetical protein
28	 39.72	0	30335..30976	+	213	46906252	-	LMOf2365_0029	-	cutC family protein
29	 38.69	0	31181..33085	+	634	46906253	-	LMOf2365_0030	-	PTS system, beta-glucoside-specific, IIABC component
30	 35.73	0	33167..34042	+	291	46906254	-	LMOf2365_0031	-	hypothetical protein
31	 33.49	-1	34191..34811	-	206	46906255	-	LMOf2365_0032	-	hypothetical protein
32	 27.52	-2	35448..36170	-	240	46906256	-	LMOf2365_0034	-	hypothetical protein
33	 29.55	-2	36172..36885	-	237	46906257	-	LMOf2365_0035	-	hypothetical protein
34	 30.33	-2	36872..37636	-	254	46906258	-	LMOf2365_0036	-	hypothetical protein
35	 33.78	-1	37707..38156	-	149	46906259	-	LMOf2365_0037	-	hypothetical protein
36	 41.00	0	38379..38717	+	112	46906260	-	LMOf2365_0038	-	hypothetical protein
37	 36.54	0	38754..39563	-	269	46906261	-	LMOf2365_0039	-	HAD superfamily hydrolase
38	 37.41	0	39580..40635	-	351	46906262	-	LMOf2365_0040	-	LacI family transcription regulator
39	 40.68	0	40837..41802	+	321	46906263	-	LMOf2365_0041	-	ROK family protein
40	 40.78	0	41799..44201	+	800	46906264	-	LMOf2365_0042	-	glycosy hydrolase family protein
41	 39.74	0	44214..45572	+	452	46906265	-	LMOf2365_0043	-	PTS system, beta-glucoside-specific, IIC component
42	 38.49	0	45574..46659	+	361	46906266	-	LMOf2365_0044	-	SIS domain-containing protein
43	 37.91	0	46891..47916	+	341	46906267	argF-1	LMOf2365_0045	-	putrescine carbamoyltransferase
44	 37.23	0	47989..49374	+	461	46906268	-	LMOf2365_0046	-	amino acid permease family protein
45	 40.09	0	49361..50455	+	364	46906269	-	LMOf2365_0047	-	agmatine deiminase
46	 40.02	0	50468..51409	+	313	46906270	arcC	LMOf2365_0048	-	carbamate kinase
47	 38.83	0	51510..52619	+	369	46906271	-	LMOf2365_0049	-	agmatine deiminase
48	 32.69	-1	52636..53415	+	259	46906272	-	LMOf2365_0050	-	phosphosugar-binding protein
49	 34.70	0	53519..54178	+	219	46906273	-	LMOf2365_0051	-	DedA family protein
50	 37.88	0	54257..55489	+	410	46906274	arcA	LMOf2365_0052	-	arginine deiminase
51	 35.71	0	55768..56061	+	97	46906275	rpsF	LMOf2365_0053	-	30S ribosomal protein S6
52	 40.97	0	56117..56653	+	178	46906276	ssb-1	LMOf2365_0054	-	single-strand binding protein
53	 39.58	0	56697..56936	+	79	46906277	rpsR	LMOf2365_0055	-	30S ribosomal protein S18
54	 32.52	-1	57089..57700	+	203	46906278	-	LMOf2365_0056	-	putative lipoprotein
55	 35.61	0	57957..58571	+	204	46906279	-	LMOf2365_0057	-	putative accessory gene regulator protein
56	 30.07	-2	58564..58716	+	50	46906280	-	LMOf2365_0058	-	accessory gene regulator protein D, putative
57	 31.79	-1	58812..60107	+	431	46906281	agrC	LMOf2365_0059	-	accessory gene regulator protein C
58	 34.84	0	60126..60854	+	242	46906282	agrA	LMOf2365_0060	-	accessory gene regulator protein A
59	 42.55	+1	61021..62994	+	657	46906283	-	LMOf2365_0061	-	DHH subfamily 1 protein
60	 35.12	0	62997..63443	+	148	46906284	rplI	LMOf2365_0062	-	50S ribosomal protein L9
61	 42.35	+1	63468..64820	+	450	46906285	dnaB	LMOf2365_0063	-	replicative DNA helicase
62	 30.00	-2	64876..65025	+	49	46906286	-	LMOf2365_0064	-	hypothetical protein
63	 39.98	0	65079..66371	+	430	46906287	purA	LMOf2365_0065	-	adenylosuccinate synthetase
64	 26.80	-2	66420..66572	+	50	46906288	-	LMOf2365_0066	-	hypothetical protein
65	 38.44	0	66674..66967	+	97	46906289	-	LMOf2365_0067	-	hypothetical protein
66	 36.51	0	67116..70322	+	1068	46906290	-	LMOf2365_0068	-	hypothetical protein
67	 38.57	0	70312..70827	+	171	46906291	-	LMOf2365_0069	-	hypothetical protein
68	 34.13	-1	70845..71096	+	83	46906292	-	LMOf2365_0070	-	hypothetical protein
69	 35.17	0	71118..72314	+	398	46906293	-	LMOf2365_0071	-	hypothetical protein
70	 40.16	0	72328..76821	+	1497	46906294	-	LMOf2365_0072	-	diarrheal toxin/FtsK/SpoIIIE family protein
71	 34.85	0	76841..77236	+	131	46906295	-	LMOf2365_0073	-	hypothetical protein
72	 35.67	0	77229..77528	+	99	46906296	-	LMOf2365_0074	-	hypothetical protein
73	 35.47	0	77525..78226	+	233	46906297	-	LMOf2365_0075	-	hypothetical protein
74	 36.64	0	78227..78559	+	110	46906298	-	LMOf2365_0076	-	hypothetical protein
75	 44.31	+1	78573..80249	+	558	46906299	-	LMOf2365_0077	-	hypothetical protein
76	 23.59	-2	80262..80651	+	129	46906300	-	LMOf2365_0078	-	hypothetical protein
77	 24.33	-2	80789..81199	+	136	46906301	-	LMOf2365_0079	-	hypothetical protein
78	 35.29	0	81384..81638	+	84	46906302	-	LMOf2365_0080	-	hypothetical protein
79	 30.56	-2	81770..82093	+	107	46906303	-	LMOf2365_0081	-	hypothetical protein
80	 43.17	+1	82350..84047	+	565	46906304	-	LMOf2365_0082	-	hypothetical protein
81	 25.75	-2	84049..84483	+	144	46906305	-	LMOf2365_0083	-	hypothetical protein
82	 39.24	0	84907..85617	+	236	46906306	-	LMOf2365_0084	-	hypothetical protein
83	 33.33	-1	85618..85941	+	107	46906307	-	LMOf2365_0085	-	hypothetical protein
84	 37.07	0	86108..86401	+	97	46906308	-	LMOf2365_0086	-	hypothetical protein
85	 27.52	-2	86538..87260	+	240	46906309	-	LMOf2365_0087	-	hypothetical protein
86	 36.61	0	87500..87682	+	60	46906310	-	LMOf2365_0088	-	hypothetical protein
87	 32.35	-1	88139..88240	+	33	46906311	-	LMOf2365_0089	-	hypothetical protein
88	 30.18	-2	88367..88651	+	94	46906312	-	LMOf2365_0090	-	hypothetical protein
89	 26.00	-2	88639..89088	+	149	46906313	-	LMOf2365_0091	-	hypothetical protein
90	 44.96	+1	89326..90099	+	257	46906314	-	LMOf2365_0092	-	transferase, putative
91	 41.60	+1	90096..91148	+	350	46906315	ada	LMOf2365_0093	-	Ada regulatory protein
92	 38.24	0	91170..91883	-	237	46906316	-	LMOf2365_0094	-	pentapeptide repeat-containing protein
93	 44.10	+1	91939..92895	+	318	46906317	-	LMOf2365_0095	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
94	 37.66	0	93236..94759	+	507	46906318	-	LMOf2365_0096	-	hypothetical protein
95	 30.42	-2	94741..95118	+	125	46906319	-	LMOf2365_0097	-	hypothetical protein
96	 27.83	-2	95591..95935	+	114	46906320	-	LMOf2365_0098	-	hypothetical protein
97	 34.80	0	96061..96402	+	113	46906321	-	LMOf2365_0099	-	hypothetical protein
98	 39.84	0	96469..96837	-	122	46906322	-	LMOf2365_0100	-	MerR family transcriptional regulator
99	 41.87	+1	96893..97876	-	327	46906323	-	LMOf2365_0101	-	aldo/keto reductase family oxidoreductase
100	 32.17	-1	98267..98956	+	229	46906324	-	LMOf2365_0102	-	hypothetical protein
37.91	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.