IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1246	 31.44	-1	1254592..1254855	+	87	46907470	-	LMOf2365_1261	-	hypothetical protein
1247	 36.27	0	1255023..1255499	+	158	46907471	-	LMOf2365_1262	-	MutT/nudix family protein
1248	 33.33	-1	1255537..1255782	-	81	46907472	-	LMOf2365_1263	-	hypothetical protein
1249	 37.65	0	1255779..1256984	-	401	46907473	-	LMOf2365_1264	-	transporter, putative
1250	 33.48	-1	1257189..1257848	+	219	46907474	-	LMOf2365_1265	-	transcriptional regulator, putative
1251	 30.86	-1	1257820..1258062	+	80	46907475	-	LMOf2365_1266	-	hypothetical protein
1252	 35.57	0	1258149..1258997	-	282	46907476	-	LMOf2365_1267	-	hypothetical protein
1253	 28.70	-2	1259195..1259302	-	35	46907477	-	LMOf2365_1268	-	hypothetical protein
1254	 28.26	-2	1259327..1259464	-	45	46907478	-	LMOf2365_1269	-	hypothetical protein
1255	 37.25	0	1259615..1260328	+	237	46907479	treR	LMOf2365_1270	-	trehalose operon transcriptional repressor
1256	 38.92	0	1260359..1262005	-	548	46907480	treC-2	LMOf2365_1271	-	trehalose-6-phosphate hydrolase
1257	 39.33	0	1262024..1263508	-	494	46907481	treB	LMOf2365_1272	-	PTS system, trehalose-specific, IIBC component
1258	 35.06	0	1263626..1264087	+	153	46907482	-	LMOf2365_1273	-	MutT/nudix family protein
1259	 32.90	-1	1264126..1264590	-	154	46907483	-	LMOf2365_1274	-	hypothetical protein
1260	 37.81	0	1264779..1265693	+	304	46907484	-	LMOf2365_1275	-	alpha/beta fold family hydrolase
1261	 39.18	0	1265719..1266966	-	415	46907485	proA	LMOf2365_1276	-	gamma-glutamyl phosphate reductase
1262	 37.79	0	1266950..1267780	-	276	46907486	proB	LMOf2365_1277	-	gamma-glutamyl kinase
1263	 37.02	0	1267927..1269066	-	379	46907487	-	LMOf2365_1278	-	hypothetical protein
1264	 34.85	0	1269146..1269541	-	131	46907488	-	LMOf2365_1279	-	ans operon transcriptional repressor, putative
1265	 35.19	0	1269692..1269907	+	71	46907489	-	LMOf2365_1280	-	DNA-binding protein
1266	 34.46	0	1270031..1270564	+	177	46907490	-	LMOf2365_1281	-	hypothetical protein
1267	 32.88	-1	1270580..1271245	+	221	46907491	-	LMOf2365_1282	-	putative lipoprotein
1268	 34.08	-1	1271507..1272445	+	312	46907492	-	LMOf2365_1283	-	hypothetical protein
1269	 37.69	0	1272560..1273843	+	427	46907493	tig	LMOf2365_1284	-	trigger factor
1270	 33.33	-1	1273929..1274021	+	30	46907494	-	LMOf2365_1285	-	hypothetical protein
1271	 37.30	0	1274028..1275287	+	419	46907495	clpX	LMOf2365_1286	-	ATP-dependent protease ATP-binding subunit
1272	 35.45	0	1275406..1275972	+	188	46907496	-	LMOf2365_1287	-	signal peptidase I
1273	 39.12	0	1276007..1276576	+	189	46907497	-	LMOf2365_1288	-	signal peptidase I
1274	 36.83	0	1276678..1277220	+	180	46907498	-	LMOf2365_1289	-	signal peptidase I
1275	 38.43	0	1277230..1278093	+	287	46907499	rbgA	LMOf2365_1290	-	ribosomal biogenesis GTPase
1276	 37.53	0	1278090..1278875	+	261	46907500	rnhB	LMOf2365_1291	-	ribonuclease HII
1277	 35.89	0	1279009..1279869	+	286	46907501	-	LMOf2365_1292	-	Smf family protein
1278	 37.52	0	1280142..1282220	+	692	46907502	topA	LMOf2365_1293	-	DNA topoisomerase I
1279	 40.08	0	1282283..1283587	+	434	46907503	gid	LMOf2365_1294	-	tRNA (uracil-5-)-methyltransferase Gid
1280	 37.87	0	1283870..1284772	+	300	46907504	xerC	LMOf2365_1295	-	integrase/recombinase XerC
1281	 40.37	0	1284793..1285332	+	179	46907505	hslV	LMOf2365_1296	-	ATP-dependent protease peptidase subunit
1282	 37.43	0	1285364..1286755	+	463	46907506	hslU	LMOf2365_1297	-	ATP-dependent protease ATP-binding subunit
1283	 36.54	0	1286776..1287555	+	259	46907507	-	LMOf2365_1298	-	transcriptional repressor CodY
1284	 37.38	0	1287658..1288077	+	139	46907508	-	LMOf2365_1299	-	4-hydroxybenzoyl-CoA thioesterase family protein
1285	 38.14	0	1288100..1288411	+	103	46907509	-	LMOf2365_1300	-	hypothetical protein
1286	 38.14	0	1288414..1289286	+	290	46907510	-	LMOf2365_1301	-	aldose epimerase family protein
1287	 40.37	0	1289328..1289924	-	198	46907511	-	LMOf2365_1302	-	hypothetical protein
1288	 39.22	0	1290082..1290489	+	135	46907512	-	LMOf2365_1303	-	CoA-binding domain-containing protein
1289	 42.33	+1	1290670..1292637	+	655	46907513	parE	LMOf2365_1304	-	DNA topoisomerase IV subunit B
1290	 38.01	0	1292634..1295093	+	819	46907514	parC	LMOf2365_1305	-	DNA topoisomerase IV subunit A
1291	 39.53	0	1295176..1295643	+	155	46907515	luxS	LMOf2365_1306	-	S-ribosylhomocysteinase
1292	 36.02	0	1296271..1298097	+	608	46907516	-	LMOf2365_1307	-	hypothetical protein
1293	 36.78	0	1298130..1300016	-	628	46907517	-	LMOf2365_1308	-	acyltransferase family protein
1294	 38.05	0	1300229..1300927	+	232	46907518	-	LMOf2365_1309	-	glycerophosphoryl diester phosphodiesterase, putative
1295	 38.10	0	1301160..1302836	+	558	46907519	glpD	LMOf2365_1310	-	glycerol-3-phosphate dehydrogenase, aerobic
1296	 37.25	0	1302963..1303880	+	305	46907520	miaA	LMOf2365_1311	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1297	 35.47	0	1304002..1304235	+	77	46907521	hfq	LMOf2365_1312	-	hfq protein
1298	 37.15	0	1304340..1305569	+	409	46907522	-	LMOf2365_1313	-	GTP-binding domain-containing protein
1299	 39.20	0	1305562..1306788	+	408	46907523	-	LMOf2365_1314	-	hypothetical protein
1300	 27.93	-2	1306804..1306914	+	36	46907524	-	LMOf2365_1315	-	hypothetical protein
1301	 39.02	0	1306990..1307358	+	122	46907525	glnR	LMOf2365_1316	-	transcriptional repressor GlnR
1302	 39.25	0	1307429..1308763	+	444	46907526	glnA	LMOf2365_1317	-	glutamine synthetase, type I
1303	 36.88	0	1308907..1310202	+	431	46907527	arsB	LMOf2365_1318	-	arsenical pump membrane protein
1304	 37.33	0	1310236..1310760	-	174	46907528	-	LMOf2365_1319	-	acetyltransferase
1305	 38.70	0	1310791..1311405	-	204	46907529	lexA	LMOf2365_1320	-	LexA repressor
1306	 34.55	0	1311562..1311891	+	109	46907530	-	LMOf2365_1321	-	hypothetical protein
1307	 32.89	-1	1311985..1312212	+	75	46907531	-	LMOf2365_1322	-	hypothetical protein
1308	 39.85	0	1312359..1314353	+	664	46907532	tkt-2	LMOf2365_1323	-	transketolase
1309	 33.75	-1	1314574..1314813	+	79	46907533	-	LMOf2365_1324	-	hypothetical protein
1310	 37.57	0	1314862..1315593	-	243	46907534	-	LMOf2365_1325	-	hypothetical protein
1311	 37.87	0	1315615..1316121	-	168	46907535	-	LMOf2365_1326	-	ParB-like nuclease domain-containing protein
1312	 35.40	0	1316131..1317435	-	434	46907536	-	LMOf2365_1327	-	hypothetical protein
1313	 31.67	-1	1317425..1318624	-	399	46907537	-	LMOf2365_1328	-	SNF2 family protein
1314	 29.07	-2	1318608..1318982	-	124	46907538	-	LMOf2365_1329	-	hypothetical protein
1315	 41.43	0	1319275..1320003	+	242	46907539	pyrH	LMOf2365_1330	-	uridylate kinase
1316	 36.02	0	1320003..1320560	+	185	46907540	frr	LMOf2365_1331	-	ribosome recycling factor
1317	 38.87	0	1320791..1321549	+	252	46907541	uppS	LMOf2365_1332	-	undecaprenyl diphosphate synthase
1318	 34.60	0	1321563..1322351	+	262	46907542	cdsA	LMOf2365_1333	-	phosphatidate cytidylyltransferase
1319	 39.90	0	1322366..1323508	+	380	46907543	dxr	LMOf2365_1334	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1320	 39.19	0	1323522..1324784	+	420	46907544	-	LMOf2365_1335	-	membrane-associated zinc metalloprotease, putative
1321	 39.19	0	1324825..1326531	+	568	46907545	proS	LMOf2365_1336	-	prolyl-tRNA synthetase
1322	 39.31	0	1326637..1330971	+	1444	46907546	polC	LMOf2365_1337	-	DNA polymerase III PolC
1323	 37.61	0	1331153..1331620	+	155	46907547	-	LMOf2365_1338	-	hypothetical protein
1324	 39.86	0	1331650..1332768	+	372	46907548	nusA	LMOf2365_1339	-	transcription elongation factor NusA
1325	 39.30	0	1332783..1333067	+	94	46907549	-	LMOf2365_1340	-	hypothetical protein
1326	 39.33	0	1333060..1333359	+	99	46907550	-	LMOf2365_1341	-	ribosomal protein L7A family protein
1327	 39.51	0	1333382..1335730	+	782	46907551	infB	LMOf2365_1342	-	translation initiation factor IF-2
1328	 40.14	0	1335727..1336005	+	92	46907552	-	LMOf2365_1343	-	hypothetical protein
1329	 38.26	0	1336022..1336366	+	114	46907553	rbfA	LMOf2365_1344	-	ribosome-binding factor A
1330	 39.89	0	1336462..1337376	+	304	46907554	truB	LMOf2365_1345	-	tRNA pseudouridine synthase B
1331	 38.20	0	1337446..1338390	+	314	46907555	ribF	LMOf2365_1346	-	riboflavin biosynthesis protein RibF
1332	 37.41	0	1338527..1338796	+	89	46907556	rpsO	LMOf2365_1347	-	30S ribosomal protein S15
1333	 39.83	0	1339044..1341215	+	723	46907557	pnp	LMOf2365_1348	-	polynucleotide phosphorylase/polyadenylase
1334	 39.39	0	1341254..1342294	-	346	46907558	-	LMOf2365_1349	-	hypothetical protein
1335	 32.68	-1	1342457..1342918	-	153	46907559	-	LMOf2365_1350	-	hypothetical protein
1336	 33.61	-1	1342964..1343320	-	118	46907560	-	LMOf2365_1351	-	hypothetical protein
1337	 34.67	0	1343518..1343667	+	49	161611350	rpmG	LMOf2365_1352	-	50S ribosomal protein L33
1338	 32.96	-1	1343723..1344262	+	179	46907562	-	LMOf2365_1353	-	5-formyltetrahydrofolate cyclo-ligase family protein
1339	 36.10	0	1344343..1345899	+	518	46907563	-	LMOf2365_1354	-	rhomboid family protein
1340	 26.29	-2	1345912..1346124	+	70	46907564	-	LMOf2365_1355	-	hypothetical protein
1341	 37.46	0	1346149..1347117	+	322	46907565	glcK	LMOf2365_1356	-	glucokinase
1342	 31.50	-1	1347263..1348354	+	363	46907566	-	LMOf2365_1357	-	putative lipoprotein
1343	 31.76	-1	1348372..1348689	-	105	46907567	-	LMOf2365_1358	-	hypothetical protein
1344	 31.84	-1	1348686..1349153	-	155	46907568	-	LMOf2365_1359	-	hypothetical protein
1345	 31.93	-1	1349116..1349400	-	94	46907569	-	LMOf2365_1360	-	ATP-binding protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.