IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1099	 38.10	0	1126762..1126887	-	41	46907323	-	LMOf2365_1112	-	hypothetical protein
1100	 30.07	-2	1126911..1127798	+	295	46907324	-	LMOf2365_1113	-	ABC transporter, ATP-binding protein
1101	 28.80	-2	1127798..1128547	+	249	46907325	-	LMOf2365_1114	-	ABC transporter, permease protein
1102	 30.50	-2	1128588..1128905	+	105	46907326	-	LMOf2365_1115	-	hypothetical protein
1103	 29.57	-2	1128902..1129777	+	291	46907327	-	LMOf2365_1116	-	hypothetical protein
1104	 28.98	-2	1129785..1130702	+	305	46907328	-	LMOf2365_1117	-	hypothetical protein
1105	 30.37	-2	1130695..1132008	+	437	46907329	-	LMOf2365_1118	-	hypothetical protein
1106	 24.49	-2	1132001..1132588	+	195	46907330	-	LMOf2365_1119	-	CAAX amino terminal protease family protein
1107	 31.65	-1	1132833..1133606	+	257	46907331	-	LMOf2365_1120	-	AraC family transcriptional regulator
1108	 33.05	-1	1133671..1134027	+	118	46907332	-	LMOf2365_1121	-	glyoxalase family protein
1109	 27.38	-2	1134444..1134779	-	111	46907333	-	LMOf2365_1122	-	hypothetical protein
1110	 27.06	-2	1134754..1135566	-	270	46907334	-	LMOf2365_1123	-	hypothetical protein
1111	 37.32	0	1136256..1136606	+	116	46907335	-	LMOf2365_1125	-	hypothetical protein
1112	 35.46	0	1136609..1136749	+	46	46907336	-	LMOf2365_1126	-	hypothetical protein
1113	 26.29	-2	1136761..1137129	+	122	46907337	-	LMOf2365_1127	-	hypothetical protein
1114	 29.76	-2	1137166..1137585	+	139	46907338	-	LMOf2365_1128	-	hypothetical protein
1115	 28.06	-2	1137671..1138144	+	157	46907339	-	LMOf2365_1129	-	hypothetical protein
1116	 32.19	-1	1138134..1138571	+	145	46907340	-	LMOf2365_1130	-	hypothetical protein
1117	 35.99	0	1138975..1139313	+	112	46907341	-	LMOf2365_1131	-	hypothetical protein
1118	 37.84	0	1139331..1139774	+	147	46907342	-	LMOf2365_1132	-	acetyltransferase
1119	 35.09	0	1139774..1140229	+	151	46907343	-	LMOf2365_1133	-	hypothetical protein
1120	 40.14	0	1140243..1141241	-	332	46907344	-	LMOf2365_1134	-	hypothetical protein
1121	 34.51	0	1141238..1141834	-	198	46907345	-	LMOf2365_1135	-	acetyltransferase
1122	 32.36	-1	1141831..1142550	-	239	46907346	-	LMOf2365_1136	-	hypothetical protein
1123	 36.83	0	1142801..1144516	+	571	46907347	-	LMOf2365_1137	-	ABC transporter, ATP-binding/permease protein
1124	 38.25	0	1144518..1146164	+	548	46907348	-	LMOf2365_1138	-	ABC transporter, ATP-binding/permease protein
1125	 36.89	0	1146203..1146511	-	102	46907349	-	LMOf2365_1139	-	hypothetical protein
1126	 31.90	-1	1146579..1146926	+	115	46907350	-	LMOf2365_1140	-	MerR family transcriptional regulator
1127	 33.07	-1	1146951..1148090	+	379	46907351	-	LMOf2365_1141	-	hypothetical protein
1128	 39.49	0	1148209..1148679	+	156	46907352	-	LMOf2365_1142	-	hypothetical protein
1129	 34.02	-1	1148676..1148966	+	96	46907353	-	LMOf2365_1143	-	hypothetical protein
1130	 37.17	0	1149246..1150781	+	511	46907354	-	LMOf2365_1144	-	cell wall surface anchor family protein
1131	 32.47	-1	1150816..1151163	-	115	46907355	-	LMOf2365_1145	-	hypothetical protein
1132	 39.62	0	1151228..1151800	-	190	46907356	clpP-1	LMOf2365_1146	-	ATP-dependent Clp protease proteolytic subunit
1133	 40.20	0	1151931..1152338	-	135	46907357	-	LMOf2365_1147	-	hypothetical protein
1134	 39.38	0	1152430..1152909	+	159	46907358	-	LMOf2365_1148	-	siroheme synthase subunit family protein
1135	 39.93	0	1153028..1154392	+	454	46907359	-	LMOf2365_1149	-	PduS protein
1136	 40.54	0	1154389..1154943	+	184	46907360	-	LMOf2365_1150	-	PduT protein
1137	 38.46	0	1155091..1155441	+	116	46907361	pduU	LMOf2365_1151	-	propanediol utilization protein PduU
1138	 40.05	0	1155447..1155878	+	143	46907362	-	LMOf2365_1152	-	propanediol utilization protein PduV
1139	 43.41	+1	1155903..1156646	+	247	46907363	-	LMOf2365_1153	-	hypothetical protein
1140	 38.10	0	1156651..1157196	+	181	46907364	cobU	LMOf2365_1154	-	cobinamide kinase/cobinamide phosphate guanylyltransferase
1141	 40.70	0	1157198..1157944	+	248	46907365	cobS	LMOf2365_1155	-	cobalamin 5'-phosphate synthase
1142	 38.54	0	1157945..1158520	+	191	46907366	cobC	LMOf2365_1156	-	alpha-ribazole-5'-phosphate phosphatase
1143	 37.97	0	1158930..1159814	-	294	46907367	-	LMOf2365_1157	-	transcriptional regulator PocR, putative
1144	 33.93	-1	1159883..1160050	-	55	46907368	-	LMOf2365_1158	-	hypothetical protein
1145	 47.57	+2	1160117..1160404	+	95	46907369	pduA	LMOf2365_1159	-	propanediol utilization protein PduA
1146	 42.31	+1	1160499..1161200	+	233	46907370	pduB	LMOf2365_1160	-	propanediol utilization protein PduB
1147	 41.20	0	1161219..1162883	+	554	46907371	pduC	LMOf2365_1161	-	glycerol dehydratase large subunit
1148	 40.30	0	1162921..1163580	+	219	46907372	pduD	LMOf2365_1162	-	propanediol utilization: dehydratase, medium subunit
1149	 39.38	0	1163597..1164109	+	170	46907373	pduE	LMOf2365_1163	-	propanediol utilization: dehydratase, small subunit
1150	 42.72	+1	1164155..1165975	+	606	46907374	pduG	LMOf2365_1164	-	propanediol utilization: diol dehydratase reactivation
1151	 38.79	0	1165972..1166319	+	115	46907375	-	LMOf2365_1165	-	PduH protein
1152	 42.92	+1	1166332..1166769	+	145	46907376	-	LMOf2365_1166	-	propanediol utilization protein PduK, putative
1153	 43.84	+1	1166794..1167069	+	91	46907377	-	LMOf2365_1167	-	propanediol utilization protein PduJ, putative
1154	 40.41	0	1167073..1167708	+	211	46907378	-	LMOf2365_1168	-	propanediol utilization protein PduL
1155	 44.05	+1	1167729..1168568	+	279	46907379	eutJ	LMOf2365_1169	-	ethanolamine utilization protein
1156	 37.71	0	1168565..1169044	+	159	46907380	pduM	LMOf2365_1170	-	propanediol utilization protein PduM
1157	 40.53	0	1169049..1169312	+	87	46907381	pduN	LMOf2365_1171	-	propanediol utilization: polyhedral bodies
1158	 40.06	0	1169327..1170322	+	331	46907382	-	LMOf2365_1172	-	PduO protein
1159	 40.50	0	1170329..1171738	+	469	46907383	pduP	LMOf2365_1173	-	CoA-dependent propionaldehyde dehydrogenase
1160	 40.21	0	1171754..1172872	+	372	46907384	pduQ	LMOf2365_1174	-	propanol dehydrogenase
1161	 40.00	0	1172900..1173604	+	234	46907385	glpF-1	LMOf2365_1175	-	glycerol uptake facilitator protein
1162	 40.12	0	1173670..1174863	+	397	46907386	-	LMOf2365_1176	-	propionate/acetate kinase, putative
1163	 39.13	0	1174877..1175962	+	361	46907387	-	LMOf2365_1177	-	threonine-phosphate decarboxylase
1164	 42.01	+1	1175952..1176827	+	291	46907388	-	LMOf2365_1178	-	propanediol utilization protein PduX
1165	 39.64	0	1176851..1176961	-	36	46907389	-	LMOf2365_1179	-	hypothetical protein
1166	 36.46	0	1176998..1177093	-	31	46907390	-	LMOf2365_1180	-	hypothetical protein
1167	 37.98	0	1177417..1178556	+	379	46907391	-	LMOf2365_1181	-	alcohol dehydrogenase, iron-dependent
1168	 39.09	0	1178840..1179412	+	190	46907392	-	LMOf2365_1182	-	transcription antiterminator response regulator, putative
1169	 37.31	0	1179405..1180862	+	485	46907393	-	LMOf2365_1183	-	sensor histidine kinase
1170	 39.80	0	1180952..1182373	+	473	46907394	eutA	LMOf2365_1184	-	reactivating factor for ethanolamine ammonia lyase
1171	 40.66	0	1182415..1183779	+	454	46907395	eutB	LMOf2365_1185	-	ethanolamine ammonia-lyase heavy chain
1172	 39.00	0	1183799..1184680	+	293	46907396	eutC	LMOf2365_1186	-	ethanolamine ammonia-lyase small subunit
1173	 40.83	0	1184703..1185356	+	217	46907397	eutL	LMOf2365_1187	-	ethanolamine utilization protein
1174	 37.74	0	1185371..1185892	+	173	46907398	-	LMOf2365_1188	-	ethanolamine utilization protein, putative
1175	 39.90	0	1185892..1187352	+	486	46907399	-	LMOf2365_1189	-	aldehyde dehydrogenase family protein
1176	 47.02	+2	1187384..1187668	+	94	46907400	-	LMOf2365_1190	-	ethanolamine utilization protein, putative
1177	 37.04	0	1187834..1188589	+	251	46907401	-	LMOf2365_1191	-	hypothetical protein
1178	 39.10	0	1188602..1189243	+	213	46907402	-	LMOf2365_1192	-	hypothetical protein
1179	 36.86	0	1189246..1189812	+	188	46907403	-	LMOf2365_1193	-	hypothetical protein
1180	 46.30	+2	1189827..1190096	+	89	46907404	-	LMOf2365_1194	-	carboxysome protein, putative
1181	 40.11	0	1190089..1190634	+	181	46907405	-	LMOf2365_1195	-	hypothetical protein
1182	 39.66	0	1190650..1191771	+	373	46907406	-	LMOf2365_1196	-	hypothetical protein
1183	 36.04	0	1191764..1192207	+	147	46907407	-	LMOf2365_1197	-	hypothetical protein
1184	 31.78	-1	1192249..1192764	-	171	46907408	-	LMOf2365_1198	-	AraC family transcriptional regulator
1185	 40.00	0	1193114..1193608	+	164	46907409	-	LMOf2365_1199	-	hypothetical protein
1186	 41.80	+1	1193941..1195299	+	452	46907410	cobB	LMOf2365_1200	-	cobyrinic acid a,c-diamide synthase
1187	 40.93	0	1195296..1196243	+	315	46907411	cobD	LMOf2365_1201	-	cobalamin biosynthesis protein
1188	 38.55	0	1196256..1196888	+	210	46907412	cbiC	LMOf2365_1202	-	precorrin-8X methylmutase
1189	 43.40	+1	1196904..1198025	+	373	46907413	cbiD	LMOf2365_1203	-	cobalt-precorrin-6A synthase
1190	 37.52	0	1198022..1198618	+	198	46907414	cbiE	LMOf2365_1204	-	cobalt-precorrin-6Y C(5)-methyltransferase
1191	 38.42	0	1198608..1199177	+	189	46907415	cbiT	LMOf2365_1205	-	cobalt-precorrin-6Y C(15)-methyltransferase
1192	 42.67	+1	1199183..1199932	+	249	46907416	cobM	LMOf2365_1206	-	precorrin-4 C11-methyltransferase
1193	 41.38	0	1199919..1200950	+	343	46907417	cbiG	LMOf2365_1207	-	cobalamin biosynthesis protein CbiG
1194	 41.46	0	1200947..1201672	+	241	46907418	cobJ	LMOf2365_1208	-	precorrin-3B C17-methyltransferase
1195	 39.71	0	1201669..1202421	+	250	46907419	cobK	LMOf2365_1209	-	precorrin-6X reductase
1196	 41.63	+1	1202421..1203902	+	493	46907420	-	LMOf2365_1210	-	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase
1197	 40.08	0	1203899..1204684	+	261	46907421	cbiK	LMOf2365_1211	-	cobalt chelatase
1198	 39.10	0	1204677..1205387	+	236	46907422	cobI	LMOf2365_1212	-	cobalt-precorrin-2 C(20)-methyltransferase
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.