IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1009	 31.93	-1	1032959..1033243	-	94	46907233	-	LMOf2365_1022	-	hypothetical protein
1010	 39.70	0	1033550..1033816	+	88	46907234	ptsH	LMOf2365_1023	-	phosphocarrier protein HPr
1011	 38.39	0	1033816..1035534	+	572	46907235	ptsI	LMOf2365_1024	-	phosphoenolpyruvate-protein phosphotransferase
1012	 33.33	-1	1035647..1036681	+	344	46907236	-	LMOf2365_1025	-	hypothetical protein
1013	 40.65	0	1036694..1037554	+	286	46907237	-	LMOf2365_1026	-	3-hydroxyisobutyrate dehydrogenase family protein
1014	 40.05	0	1037593..1038738	-	381	46907238	-	LMOf2365_1027	-	aromatic amino acid aminotransferase, putative
1015	 36.94	0	1038958..1039179	+	73	46907239	-	LMOf2365_1028	-	hypothetical protein
1016	 34.62	0	1039484..1039717	+	77	46907240	-	LMOf2365_1029	-	hypothetical protein
1017	 34.66	0	1039919..1040371	+	150	46907241	-	LMOf2365_1030	-	CBS domain-containing protein
1018	 38.79	0	1040368..1041246	+	292	46907242	-	LMOf2365_1031	-	LysR family transcriptional regulator
1019	 40.08	0	1041294..1042004	+	236	46907243	-	LMOf2365_1032	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative
1020	 40.14	0	1042068..1043183	+	371	46907244	-	LMOf2365_1033	-	M20/M25/M40 family peptidase
1021	 38.53	0	1043227..1044072	-	281	46907245	-	LMOf2365_1034	-	mechanosensitive ion channel family protein
1022	 39.61	0	1044444..1045637	+	397	46907246	-	LMOf2365_1035	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
1023	 40.40	0	1045630..1046478	+	282	46907247	-	LMOf2365_1036	-	glycine betaine/L-proline ABC transporter, permease protein
1024	 38.10	0	1046492..1047394	+	300	46907248	-	LMOf2365_1037	-	glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein
1025	 34.76	0	1047509..1048000	+	163	46907249	-	LMOf2365_1038	-	PTS system, glucose-specific, IIA component, putative
1026	 39.66	0	1048112..1048807	+	231	46907250	-	LMOf2365_1039	-	cutC family protein
1027	 39.86	0	1048888..1049760	+	290	46907251	-	LMOf2365_1040	-	hypothetical protein
1028	 37.73	0	1049904..1050608	+	234	46907252	-	LMOf2365_1041	-	hypothetical protein
1029	 38.81	0	1050605..1051663	+	352	46907253	-	LMOf2365_1042	-	histidine kinase, putative
1030	 38.18	0	1051660..1052298	+	212	46907254	-	LMOf2365_1043	-	DNA-binding response regulator
1031	 39.39	0	1052317..1052976	+	219	46907255	-	LMOf2365_1044	-	TrkA domain-containing protein
1032	 35.94	0	1053132..1054052	+	306	46907256	-	LMOf2365_1045	-	hypothetical protein
1033	 34.27	-1	1054049..1054900	+	283	46907257	-	LMOf2365_1046	-	hypothetical protein
1034	 35.92	0	1054941..1055906	-	321	46907258	-	LMOf2365_1047	-	transcriptional regulator, putative
1035	 38.43	0	1056015..1057682	-	555	46907259	-	LMOf2365_1048	-	metallo-beta-lactamase family protein
1036	 36.67	0	1057689..1057898	-	69	46907260	-	LMOf2365_1049	-	hypothetical protein
1037	 38.52	0	1058382..1059152	+	256	46907261	-	LMOf2365_1050	-	Cof-like hydrolase
1038	 36.35	0	1059200..1060228	-	342	46907262	-	LMOf2365_1051	-	LacI family transcription regulator
1039	 38.46	0	1060491..1061894	+	467	46907263	-	LMOf2365_1052	-	hypothetical protein
1040	 39.88	0	1061910..1062734	+	274	46907264	-	LMOf2365_1053	-	transketolase, N-terminal subunit
1041	 41.24	0	1062727..1063674	+	315	46907265	-	LMOf2365_1054	-	transketolase, C-terminal subunit, putative
1042	 37.98	0	1063671..1065134	+	487	46907266	glpK-1	LMOf2365_1055	-	glycerol kinase
1043	 37.10	0	1065131..1066987	+	618	46907267	-	LMOf2365_1056	-	PTS system, beta-glucoside-specific, IIABC component
1044	 36.26	0	1067007..1068272	+	421	46907268	-	LMOf2365_1057	-	hypothetical protein
1045	 34.95	0	1068333..1069136	-	267	46907269	-	LMOf2365_1058	-	hypothetical protein
1046	 40.21	0	1069204..1069785	-	193	46907270	mobA	LMOf2365_1059	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1047	 37.86	0	1069766..1070428	-	220	46907271	modC	LMOf2365_1060	-	molybdenum ABC transporter, ATP-binding protein
1048	 38.24	0	1070431..1071102	-	223	46907272	modB	LMOf2365_1061	-	molybdenum ABC transporter, permease protein
1049	 39.17	0	1071206..1071976	+	256	46907273	modA	LMOf2365_1062	-	molybdenum ABC transporter, molybdenum-binding protein
1050	 39.87	0	1072071..1073294	+	407	46907274	moeA	LMOf2365_1063	-	molybdopterin biosynthesis protein MoeA
1051	 37.65	0	1073273..1073758	+	161	46907275	mobB	LMOf2365_1064	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1052	 39.72	0	1073755..1074177	+	140	46907276	moaE	LMOf2365_1065	-	molybdenum cofactor biosynthesis protein E
1053	 38.15	0	1074161..1074409	+	82	46907277	moaD	LMOf2365_1066	-	molybdenum cofactor biosynthesis protein D
1054	 42.03	+1	1074422..1074904	+	160	46907278	moaC	LMOf2365_1067	-	molybdenum cofactor biosynthesis protein C
1055	 38.02	0	1074933..1075934	+	333	46907279	moaA	LMOf2365_1068	-	molybdenum cofactor biosynthesis protein A
1056	 41.10	0	1075969..1076457	-	162	46907280	moaB	LMOf2365_1069	-	molybdenum cofactor biosynthesis protein B
1057	 37.74	0	1076469..1077467	-	332	46907281	moeB	LMOf2365_1070	-	molybdopterin biosynthesis protein MoeB
1058	 37.66	0	1077599..1078153	+	184	46907282	-	LMOf2365_1071	-	hypothetical protein
1059	 39.67	0	1078202..1078753	-	183	46907283	def	LMOf2365_1072	-	peptide deformylase
1060	 40.86	0	1079587..1080702	+	371	46907284	pdhA	LMOf2365_1073	-	pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit
1061	 41.31	0	1080705..1081682	+	325	46907285	pdhB	LMOf2365_1074	-	pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit
1062	 40.37	0	1081793..1083427	+	544	46907286	-	LMOf2365_1075	-	dihydrolipoamide acetyltransferase
1063	 41.88	+1	1083432..1084835	+	467	46907287	-	LMOf2365_1076	-	dihydrolipoamide dehydrogenase
1064	 35.26	0	1085022..1085333	+	103	46907288	-	LMOf2365_1077	-	hypothetical protein
1065	 36.79	0	1085462..1086415	+	317	46907289	-	LMOf2365_1078	-	lactate/malate dehydrogenase family protein
1066	 37.73	0	1086415..1086687	+	90	46907290	-	LMOf2365_1079	-	hypothetical protein
1067	 36.91	0	1086709..1087239	+	176	46907291	-	LMOf2365_1080	-	hypothetical protein
1068	 35.24	0	1087297..1088241	-	314	46907292	-	LMOf2365_1081	-	magnesium transporter CorA family protein
1069	 39.35	0	1088442..1089056	-	204	46907293	-	LMOf2365_1082	-	hypothetical protein
1070	 39.28	0	1089187..1089960	+	257	46907294	-	LMOf2365_1083	-	inositol monophosphatase family protein
1071	 39.10	0	1090152..1091990	+	612	46907295	typA	LMOf2365_1084	-	GTP-binding protein TypA
1072	 35.84	0	1092168..1093043	+	291	46907296	-	LMOf2365_1085	-	hypothetical protein
1073	 33.33	-1	1093075..1093305	-	76	46907297	-	LMOf2365_1086	-	hypothetical protein
1074	 35.82	0	1093511..1093792	+	93	46907298	-	LMOf2365_1087	-	hypothetical protein
1075	 36.89	0	1093968..1095176	+	402	46907299	-	LMOf2365_1088	-	cell cycle protein FtsW
1076	 39.47	0	1095454..1098894	+	1146	46907300	pyc	LMOf2365_1089	-	pyruvate carboxylase
1077	 35.23	0	1099048..1099941	+	297	46907301	-	LMOf2365_1090	-	ABC transporter, substrate-binding protein
1078	 33.46	-1	1100235..1101026	+	263	46907302	-	LMOf2365_1091	-	techoic acid ABC transporter, efflux permease
1079	 33.43	-1	1101039..1102046	+	335	46907303	-	LMOf2365_1092	-	techoic acid ABC transporter, ATP-binding protein, putative
1080	 36.22	0	1102270..1104594	+	774	46907304	-	LMOf2365_1093	-	N-acetylmuramoyl-L-alanine amidase
1081	 31.99	-1	1104657..1106663	-	668	46907305	-	LMOf2365_1094	-	hypothetical protein
1082	 33.74	-1	1106955..1107938	+	327	46907306	-	LMOf2365_1095	-	glycosyl transferase, group 2 family protein
1083	 32.05	-1	1107950..1110052	+	700	46907307	-	LMOf2365_1096	-	hypothetical protein
1084	 33.68	-1	1110083..1112407	+	774	46907308	-	LMOf2365_1097	-	glycosyl transferase, group 2 family protein
1085	 32.05	-1	1112404..1113414	+	336	46907309	-	LMOf2365_1098	-	hypothetical protein
1086	 35.25	0	1113463..1114350	-	295	46907310	galU	LMOf2365_1099	-	UTP-glucose-1-phosphate uridylyltransferase
1087	 34.59	0	1114574..1115287	+	237	46907311	ispD	LMOf2365_1100	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1088	 39.08	0	1115280..1116305	+	341	46907312	-	LMOf2365_1101	-	alcohol dehydrogenase, zinc-dependent
1089	 36.23	0	1116448..1117827	+	459	46907313	-	LMOf2365_1102	-	glycosyl transferase, group 2 family protein
1090	 34.29	-1	1117827..1118981	+	384	46907314	-	LMOf2365_1103	-	teichoic acid biosynthesis domain-containing protein
1091	 36.11	0	1118994..1120145	+	383	46907315	-	LMOf2365_1104	-	teichoic acid biosynthesis protein B, putative
1092	 33.33	-1	1120210..1120593	+	127	46907316	tagD	LMOf2365_1105	-	glycerol-3-phosphate cytidylyltransferase
1093	 38.83	0	1120711..1122201	+	496	46907317	-	LMOf2365_1106	-	nicotinate phosphoribosyltransferase
1094	 42.18	+1	1122213..1123037	+	274	46907318	nadE	LMOf2365_1107	-	NAD synthetase
1095	 37.54	0	1123050..1123358	+	102	46907319	-	LMOf2365_1108	-	hypothetical protein
1096	 43.21	+1	1123418..1123822	+	134	46907320	-	LMOf2365_1109	-	PTS system, IIB component, putative
1097	 43.37	+1	1123963..1125507	+	514	46907321	guaA	LMOf2365_1110	-	bifunctional GMP synthase/glutamine amidotransferase protein
1098	 34.73	0	1125798..1126154	+	118	46907322	-	LMOf2365_1111	-	hypothetical protein
1099	 38.10	0	1126762..1126887	-	41	46907323	-	LMOf2365_1112	-	hypothetical protein
1100	 30.07	-2	1126911..1127798	+	295	46907324	-	LMOf2365_1113	-	ABC transporter, ATP-binding protein
1101	 28.80	-2	1127798..1128547	+	249	46907325	-	LMOf2365_1114	-	ABC transporter, permease protein
1102	 30.50	-2	1128588..1128905	+	105	46907326	-	LMOf2365_1115	-	hypothetical protein
1103	 29.57	-2	1128902..1129777	+	291	46907327	-	LMOf2365_1116	-	hypothetical protein
1104	 28.98	-2	1129785..1130702	+	305	46907328	-	LMOf2365_1117	-	hypothetical protein
1105	 30.37	-2	1130695..1132008	+	437	46907329	-	LMOf2365_1118	-	hypothetical protein
1106	 24.49	-2	1132001..1132588	+	195	46907330	-	LMOf2365_1119	-	CAAX amino terminal protease family protein
1107	 31.65	-1	1132833..1133606	+	257	46907331	-	LMOf2365_1120	-	AraC family transcriptional regulator
1108	 33.05	-1	1133671..1134027	+	118	46907332	-	LMOf2365_1121	-	glyoxalase family protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.