IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
914	 40.80	0	980817..981164	+	115	116618088	-	LEUM_0981	-	acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein
915	 41.67	+1	981193..981420	+	75	116618089	-	LEUM_0982	-	hypothetical protein
916	 32.59	-1	981773..982174	+	133	116618090	-	LEUM_0983	-	biotin carboxyl carrier protein
917	 37.29	0	982174..983514	+	446	116618091	-	LEUM_0984	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha / biotin carboxylase
918	 40.52	0	984294..985058	+	254	116618092	-	LEUM_0986	-	lactam utilization protein B related protein
919	 37.88	0	985071..986303	+	410	116618093	-	LEUM_0987	-	manganese transporter NRAMP
920	 33.89	-1	986315..987031	+	238	116618094	-	LEUM_0988	-	allophanate hydrolase subunit 1
921	 37.57	0	987028..988041	+	337	116618095	-	LEUM_0989	-	allophanate hydrolase subunit 2
922	 35.98	0	988057..989229	+	390	116618096	-	LEUM_0990	-	aminotransferase
923	 45.88	+2	991310..991867	+	185	116618097	-	LEUM_0992	-	transposase
924	 40.87	0	993261..994613	+	450	116618098	-	LEUM_0994	-	major facilitator superfamily permease
925	 40.64	0	994708..996966	+	752	116618099	-	LEUM_0995	-	maltose phosphorylase
926	 38.21	0	997023..998006	+	327	116618100	-	LEUM_0996	-	aldose 1-epimerase
927	 41.22	+1	998009..998680	+	223	116618101	-	LEUM_0997	-	HAD family sugar phosphatase
928	 32.54	-1	999155..999280	+	41	116618102	-	LEUM_0998	-	hypothetical protein
929	 31.09	-2	999287..999553	+	88	116618103	-	LEUM_0999	-	hypothetical protein
930	 31.67	-1	1000355..1000954	+	199	116618104	-	LEUM_1001	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
931	 24.84	-2	1002117..1002422	+	101	116618105	-	LEUM_1002	-	hypothetical protein
932	 28.61	-2	1002501..1002881	+	126	116618106	-	LEUM_1003	-	hypothetical protein
933	 32.44	-1	1003365..1004258	-	297	116618107	-	LEUM_1004	-	malolactic fermentation system transcription activator
934	 37.75	0	1004401..1006029	+	542	116618108	-	LEUM_1005	-	malate dehydrogenase
935	 40.22	0	1006046..1007308	+	420	116618109	-	LEUM_1006	-	Na+/malate symporter
936	 38.68	0	1008358..1008600	+	80	116618110	-	LEUM_1008	-	transposase
937	 39.55	0	1008646..1009449	+	267	116618111	-	LEUM_1009	-	transposase
938	 37.86	0	1009626..1009868	-	80	116618112	-	LEUM_1010	-	transposase
939	 33.97	-1	1010072..1012105	+	677	116618113	-	LEUM_1011	-	K+ transporter
940	 40.66	0	1012485..1013276	+	263	116618114	-	LEUM_1012	-	hypothetical protein
941	 30.29	-2	1013766..1014947	+	393	116618115	-	LEUM_1013	-	hypothetical protein
942	 29.85	-2	1014999..1015946	+	315	116618116	-	LEUM_1014	-	P-loop ATPase
943	 46.17	+2	1015940..1016344	-	134	116618117	-	LEUM_1015	-	transposase
944	 51.68	+2	1016555..1017001	-	148	116618118	-	LEUM_1016	-	ribonuclease HI
945	 44.40	+1	1017239..1018765	+	508	116618119	-	LEUM_1017	-	ABC-type proline/glycine betaine transport systems, permease and substrate binding protein
946	 47.63	+2	1018766..1019737	+	323	116618120	-	LEUM_1018	-	ABC-type proline/glycine betaine transport systems, ATPase component
947	 50.68	+2	1019815..1021146	+	443	116618121	-	LEUM_1019	-	glutathione reductase
948	 33.33	-1	1021278..1021439	+	53	116618122	-	LEUM_1020	-	hypothetical protein
949	 29.35	-2	1021436..1021912	+	158	116618123	-	LEUM_1021	-	hypothetical protein
950	 30.10	-2	1022712..1023857	+	381	116618124	-	LEUM_1022	-	hypothetical protein
951	 30.00	-2	1023971..1024120	+	49	116618125	-	LEUM_1023	-	hypothetical protein
952	 29.78	-2	1025448..1027418	+	656	116618126	-	LEUM_1024	-	ATPase or kinase
953	 41.00	0	1027503..1028285	+	260	116618127	-	LEUM_1025	-	hypothetical protein
954	 43.69	+1	1028611..1029672	+	353	116618128	-	LEUM_1026	-	hypothetical protein
955	 34.27	-1	1029708..1030028	+	106	116618129	-	LEUM_1027	-	hypothetical protein
956	 33.89	-1	1030117..1030656	+	179	116618130	-	LEUM_1028	-	hypothetical protein
957	 34.21	-1	1030672..1030899	+	75	116618131	-	LEUM_1029	-	hypothetical protein
958	 33.60	-1	1030901..1031269	+	122	116618132	-	LEUM_1030	-	hypothetical protein
959	 31.34	-1	1031404..1032006	+	200	116618133	-	LEUM_1031	-	hypothetical protein
960	 37.75	0	1032070..1034109	+	679	116618134	-	LEUM_1032	-	hypothetical protein
961	 39.64	0	1034109..1035281	+	390	116618135	-	LEUM_1033	-	surface antigen
962	 36.57	0	1035297..1035821	+	174	116618136	-	LEUM_1034	-	hypothetical protein
963	 33.51	-1	1035811..1036377	+	188	116618137	-	LEUM_1035	-	hypothetical protein
964	 32.24	-1	1036390..1036848	+	152	116618138	-	LEUM_1036	-	hypothetical protein
965	 36.29	0	1036877..1039375	+	832	116618139	-	LEUM_1037	-	conjugal transfer protein, ATPase
966	 29.17	-2	1039389..1039532	+	47	116618140	-	LEUM_1038	-	hypothetical protein
967	 31.03	-2	1039601..1041160	+	519	116618141	-	LEUM_1039	-	primosomal protein N'
968	 34.77	0	1041147..1042535	+	462	116618142	-	LEUM_1040	-	DNA segregation ATPase FtsK/SpoIIIE related protein
969	 31.41	-1	1042535..1042846	+	103	116618143	-	LEUM_1041	-	hypothetical protein
970	 26.55	-2	1043037..1043891	-	284	116618144	-	LEUM_1042	-	hypothetical protein
971	 38.05	0	1044090..1044386	+	98	116618145	-	LEUM_1043	-	hypothetical protein
972	 37.02	0	1044773..1046401	+	542	116618146	-	LEUM_1044	-	transcriptional regulator
973	 39.06	0	1046398..1046589	+	63	116618147	-	LEUM_1045	-	hypothetical protein
974	 31.52	-1	1046660..1048144	+	494	116618148	-	LEUM_1046	-	phytoene dehydrogenase
975	 29.69	-2	1048145..1049023	+	292	116618149	-	LEUM_1047	-	farnesyl-diphosphate farnesyltransferase
976	 33.05	-1	1049063..1050109	+	348	116618150	-	LEUM_1048	-	peptide ABC transporter permease
977	 32.74	-1	1050114..1050788	+	224	116618151	-	LEUM_1049	-	peptide ABC transporter ATPase
978	 33.82	-1	1050918..1051328	+	136	116618152	-	LEUM_1050	-	hypothetical protein
979	 38.75	0	1051827..1053008	+	393	116618153	-	LEUM_1051	-	IS30 family transposase
980	 36.32	0	1053615..1053848	+	77	116618154	-	LEUM_1052	-	XRE family transcriptional regulator
981	 36.11	0	1053838..1054809	+	323	116618155	-	LEUM_1053	-	hypothetical protein
982	 36.96	0	1054837..1055112	+	91	116618156	-	LEUM_1054	-	hypothetical protein
983	 34.73	0	1055081..1055437	+	118	116618157	-	LEUM_1055	-	hypothetical protein
984	 36.01	0	1055427..1055837	+	136	116618158	-	LEUM_1056	-	single-stranded DNA-binding protein
985	 36.53	0	1055842..1056810	+	322	116618159	-	LEUM_1057	-	hypothetical protein
986	 34.92	0	1057017..1057394	+	125	116618160	-	LEUM_1058	-	hypothetical protein
987	 36.13	0	1057410..1058195	+	261	116618161	-	LEUM_1059	-	DNA-entry nuclease
988	 33.61	-1	1058196..1058909	+	237	116618162	-	LEUM_1060	-	hypothetical protein
989	 37.78	0	1058899..1059213	+	104	116618163	-	LEUM_1061	-	hypothetical protein
990	 39.38	0	1059197..1060684	+	495	116618164	-	LEUM_1062	-	hypothetical protein
991	 32.94	-1	1060851..1061864	-	337	116618165	-	LEUM_1063	-	LacI family transcription regulator
992	 35.72	0	1062077..1064128	+	683	116618166	-	LEUM_1064	-	Beta-galactosidase
993	 35.62	0	1064144..1066063	+	639	116618167	-	LEUM_1065	-	Na+/lactose symporter related transporter
994	 37.61	0	1066085..1067323	+	412	116618168	-	LEUM_1066	-	arabinogalactan endo-1,4-beta-galactosidase
995	 38.77	0	1067453..1068961	+	502	116618169	-	LEUM_1067	-	galactose-1-phosphate uridylyltransferase
996	 44.58	+2	1068968..1069972	+	334	116618170	-	LEUM_1068	-	UDP-galactose 4-epimerase
997	 35.77	0	1069995..1071185	+	396	116618171	-	LEUM_1069	-	galactokinase
998	 37.80	0	1071492..1072901	+	469	116618172	-	LEUM_1070	-	transposase
999	 30.69	-2	1073079..1074551	+	490	116618173	-	LEUM_1071	-	hypothetical protein
1000	 26.39	-2	1074551..1074910	+	119	116618174	-	LEUM_1072	-	hypothetical protein
1001	 30.69	-2	1075603..1078026	+	807	116618175	-	LEUM_1073	-	HATPase_c domain-containing protein
1002	 30.18	-2	1078019..1079002	+	327	116618176	-	LEUM_1074	-	signal transduction protein
1003	 31.08	-2	1079091..1080023	+	310	116618177	-	LEUM_1075	-	hypothetical protein
1004	 28.38	-2	1080027..1081580	+	517	116618178	-	LEUM_1076	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
1005	 38.88	0	1082739..1084073	+	444	116618179	-	LEUM_1077	-	major facilitator superfamily permease
1006	 35.89	0	1084114..1084779	+	221	116618180	-	LEUM_1078	-	flavodoxin
1007	 37.65	0	1084822..1085655	+	277	116618181	-	LEUM_1079	-	peptidase
1008	 36.81	0	1085802..1086434	+	210	116618182	-	LEUM_1080	-	saccharopine dehydrogenase related protein
1009	 38.64	0	1086531..1087208	+	225	116618183	-	LEUM_1081	-	flavodoxin
1010	 34.83	0	1087212..1088480	+	422	116618184	-	LEUM_1082	-	ferric reductase
1011	 39.49	0	1088660..1089649	+	329	116618185	-	LEUM_1083	-	aryl-alcohol dehydrogenase
1012	 38.48	0	1089682..1090128	+	148	116618186	-	LEUM_1084	-	double-stranded beta-helix-like protein
1013	 40.88	0	1090121..1090438	+	105	116618187	-	LEUM_1085	-	gamma-carboxymuconolactone decarboxylase subunit-like protein
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.