IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.86   STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
825	 37.00	0	887465..888991	+	508	116617999	-	LEUM_0890	-	Alpha-L-arabinofuranosidase
826	 39.72	0	889113..890099	+	328	116618000	-	LEUM_0891	-	LacI family transcription regulator
827	 39.62	0	890102..891055	+	317	116618001	-	LEUM_0892	-	LacI family transcription regulator
828	 39.02	0	891162..892514	+	450	116618002	-	LEUM_0893	-	major facilitator superfamily permease
829	 38.69	0	892559..894817	+	752	116618003	-	LEUM_0894	-	maltose phosphorylase
830	 39.88	0	894834..895520	+	228	116618004	-	LEUM_0895	-	HAD family sugar phosphatase
831	 38.59	0	895571..896578	-	335	116618005	-	LEUM_0896	-	LacI family transcription regulator
832	 36.92	0	896689..898359	+	556	116618006	-	LEUM_0897	-	trehalose-6-phosphate hydrolase
833	 38.97	0	898441..899805	+	454	116618007	-	LEUM_0898	-	major facilitator superfamily permease
834	 38.98	0	899809..901491	+	560	116618008	-	LEUM_0899	-	trehalose-6-phosphate hydrolase
835	 34.96	0	901719..902579	+	286	116618009	-	LEUM_0900	-	beta-glucoside operon antiterminator
836	 41.87	+1	902678..904516	+	612	116618010	-	LEUM_0901	-	trehalose PTS trehalose component IIBC
837	 39.22	0	904531..905991	+	486	116618011	-	LEUM_0902	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
838	 32.97	-1	906043..906588	-	181	116618012	-	LEUM_0903	-	acetyltransferase
839	 37.06	0	906822..907277	+	151	116618013	-	LEUM_0904	-	GAF domain-containing protein
840	 36.91	0	907352..908806	-	484	116618014	-	LEUM_0905	-	polysaccharide transporter
841	 35.43	0	909745..910125	+	126	116618015	-	LEUM_0907	-	6-pyruvoyl-tetrahydropterin synthase
842	 32.18	-1	910129..911685	+	518	116618016	-	LEUM_0908	-	hypothetical protein
843	 37.71	0	911892..912713	+	273	116618017	-	LEUM_0909	-	short chain dehydrogenase
844	 36.99	0	912741..913478	+	245	116618018	-	LEUM_0910	-	ADP-ribose pyrophosphatase
845	 40.02	0	913544..914710	+	388	116618019	-	LEUM_0911	-	major facilitator superfamily permease
846	 40.86	0	914870..915919	+	349	116618020	-	LEUM_0912	-	threonine dehydrogenase related Zn-dependent dehydrogenase
847	 30.58	-2	916078..916839	+	253	116618021	-	LEUM_0913	-	hypothetical protein
848	 33.84	-1	916856..917443	+	195	116618022	-	LEUM_0914	-	ABC-type cobalt transport system, ATPase component
849	 35.76	0	917514..918089	+	191	116618023	-	LEUM_0915	-	Uracil-DNA glycosylase
850	 37.87	0	918155..918661	+	168	116618024	-	LEUM_0916	-	hypothetical protein
851	 34.96	0	919118..919792	+	224	116618025	-	LEUM_0917	-	HAD superfamily hydrolase
852	 33.17	-1	919808..921016	-	402	116618026	-	LEUM_0918	-	major facilitator superfamily permease
853	 39.84	0	921136..921642	-	168	116618027	-	LEUM_0919	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein
854	 39.60	0	921940..922338	+	132	116618028	-	LEUM_0920	-	pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein
855	 39.64	0	922352..923557	+	401	116618029	-	LEUM_0921	-	aminotransferase
856	 38.26	0	923636..924406	+	256	116618030	-	LEUM_0922	-	Short-chain alcohol dehydrogenase
857	 37.23	0	924434..925768	+	444	116618031	-	LEUM_0923	-	H+/gluconate symporter related permease
858	 41.53	+1	925825..927252	+	475	116618032	-	LEUM_0924	-	6-phosphogluconate dehydrogenase (decarboxylating)
859	 37.72	0	927347..928327	+	326	116618033	-	LEUM_0925	-	microcin C7 resistance MccF related protein
860	 36.69	0	928790..929296	-	168	116618034	-	LEUM_0926	-	acetyltransferase
861	 37.58	0	929498..930934	+	478	116618035	-	LEUM_0927	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
862	 35.53	0	930949..931266	+	105	116618036	celB	LEUM_0928	-	cellobiose phosphotransferase system IIB component
863	 33.08	-1	931302..933293	+	663	116618037	-	LEUM_0929	-	transcriptional antiterminator
864	 34.72	0	933290..933649	+	119	116618038	celC	LEUM_0930	-	cellobiose phosphotransferase system IIA component
865	 36.04	0	933606..934160	+	184	116618039	-	LEUM_0931	-	hypothetical protein
866	 37.04	0	934163..935512	+	449	116618040	celD	LEUM_0932	-	cellobiose phosphotransferase system IIC component
867	 39.08	0	936038..937324	+	428	116618041	-	LEUM_0933	-	xanthine/uracil permease
868	 34.95	0	937317..938429	+	370	116618042	-	LEUM_0934	-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligse II
869	 38.04	0	938441..939907	+	488	116618043	-	LEUM_0935	-	Acyl-CoA reductase (LuxC)
870	 39.06	0	939920..940687	+	255	116618044	-	LEUM_0936	-	3-oxoacyl-acyl carrier protein reductase
871	 35.88	0	940748..941257	+	169	116618045	-	LEUM_0937	-	hypothetical protein
872	 37.71	0	941265..942086	+	273	116618046	-	LEUM_0938	-	hydroxyethylthiazole kinase
873	 34.31	-1	942106..942411	+	101	116618047	-	LEUM_0939	-	cellobiose-specific PTS system IIB component
874	 33.33	-1	942429..943664	+	411	116618048	-	LEUM_0940	-	phosphotransferase system cellobiose-specific component IIC
875	 33.63	-1	943664..943999	+	111	116618049	-	LEUM_0941	-	cellobiose-specific PTS system IIA component
876	 34.25	-1	943992..945416	+	474	116618050	-	LEUM_0942	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
877	 37.14	0	945586..945690	+	34	116618051	-	LEUM_0943	-	holin-like toxin
878	 37.92	0	945983..946549	+	188	116618052	-	LEUM_0944	-	dinucleotide-binding protein
879	 37.50	0	946636..946995	-	119	116618053	-	LEUM_0945	-	MarR family transcriptional regulator
880	 32.26	-1	947188..947655	+	155	116618054	-	LEUM_0946	-	MarR family transcriptional regulator
881	 38.78	0	947645..948985	+	446	116618055	-	LEUM_0947	-	glutathione reductase
882	 40.58	0	949002..949940	+	312	116618056	-	LEUM_0948	-	NADPH:quinone reductase related Zn-dependent oxidoreductase
883	 35.83	0	949958..950317	+	119	116618057	-	LEUM_0949	-	hypothetical protein
884	 35.52	0	950388..951212	-	274	116618058	-	LEUM_0950	-	lipopolysaccharide biosynthesis glycosyltransferase
885	 39.11	0	951620..952363	+	247	116618059	-	LEUM_0951	-	ABC-type Mn/Zn transport systems, ATPase component
886	 36.54	0	952356..953198	+	280	116618060	-	LEUM_0952	-	ABC-type Mn2+/Zn2+ transport systems, permease component
887	 37.47	0	953278..954219	+	313	116618061	-	LEUM_0953	-	ABC-type metal ion transport system, periplasmic component/surface adhesin
888	 35.72	0	954307..955017	-	236	116618062	-	LEUM_0954	-	Alpha-acetolactate decarboxylase
889	 36.01	0	955157..956503	-	448	116618063	-	LEUM_0955	-	hypothetical protein
890	 36.16	0	956693..957364	+	223	116618064	-	LEUM_0956	-	DNA-binding response regulator
891	 33.15	-1	957365..958432	+	355	116618065	-	LEUM_0957	-	Signal transduction histidine kinase
892	 33.91	-1	958518..959039	+	173	116618066	-	LEUM_0958	-	hypothetical protein
893	 33.76	-1	959265..959498	+	77	116618067	-	LEUM_0959	-	hypothetical protein
894	 33.33	-1	959678..960286	+	202	116618068	-	LEUM_0960	-	hypothetical protein
895	 35.69	0	960457..961689	+	410	116618069	-	LEUM_0961	-	transcriptional regulator
896	 33.78	-1	962039..962482	+	147	116618070	-	LEUM_0962	-	transcriptional regulator
897	 36.74	0	962472..963821	+	449	116618071	-	LEUM_0963	-	major facilitator superfamily permease
898	 39.35	0	964019..966709	+	896	116618072	-	LEUM_0964	-	cation transport ATPase
899	 33.33	-1	966907..967338	+	143	116618073	-	LEUM_0965	-	hypothetical protein
900	 37.88	0	967511..968389	+	292	116618074	-	LEUM_0966	-	aldo/keto reductase
901	 37.85	0	968948..969412	+	154	116618075	-	LEUM_0968	-	hypothetical protein
902	 33.51	-1	969471..970043	+	190	116618076	-	LEUM_0969	-	putative threonine efflux protein
903	 34.48	-1	970083..971042	-	319	116618077	-	LEUM_0970	-	2-hydroxyacid dehydrogenase
904	 39.24	0	971346..972209	+	287	116618078	-	LEUM_0971	-	Short-chain alcohol dehydrogenase
905	 32.92	-1	972702..973181	+	159	116618079	-	LEUM_0972	-	peptidase E
906	 36.56	0	973394..974044	+	216	116618080	-	LEUM_0973	-	hypothetical protein
907	 38.78	0	974148..975470	+	440	116618081	-	LEUM_0974	-	nucleotidyltransferase/DNA polymerase for DNA repair
908	 35.96	0	975463..975843	+	126	116618082	-	LEUM_0975	-	hypothetical protein
909	 33.73	-1	975830..976081	+	83	116618083	-	LEUM_0976	-	hypothetical protein
910	 40.86	0	976334..978154	+	606	116618084	-	LEUM_0977	-	pyruvate oxidase
911	 39.01	0	978307..978729	+	140	116618085	-	LEUM_0978	-	molecular chaperone (small heat shock protein)
912	 33.96	-1	978891..979526	-	211	116618086	-	LEUM_0979	-	nucleoside-diphosphate-sugar epimerase
913	 30.99	-2	979984..980496	+	170	116618087	-	LEUM_0980	-	hypothetical protein
914	 40.80	0	980817..981164	+	115	116618088	-	LEUM_0981	-	acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein
915	 41.67	+1	981193..981420	+	75	116618089	-	LEUM_0982	-	hypothetical protein
916	 32.59	-1	981773..982174	+	133	116618090	-	LEUM_0983	-	biotin carboxyl carrier protein
917	 37.29	0	982174..983514	+	446	116618091	-	LEUM_0984	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha / biotin carboxylase
918	 40.52	0	984294..985058	+	254	116618092	-	LEUM_0986	-	lactam utilization protein B related protein
919	 37.88	0	985071..986303	+	410	116618093	-	LEUM_0987	-	manganese transporter NRAMP
920	 33.89	-1	986315..987031	+	238	116618094	-	LEUM_0988	-	allophanate hydrolase subunit 1
921	 37.57	0	987028..988041	+	337	116618095	-	LEUM_0989	-	allophanate hydrolase subunit 2
922	 35.98	0	988057..989229	+	390	116618096	-	LEUM_0990	-	aminotransferase
923	 45.88	+2	991310..991867	+	185	116618097	-	LEUM_0992	-	transposase
924	 40.87	0	993261..994613	+	450	116618098	-	LEUM_0994	-	major facilitator superfamily permease
37.86	MEAN

3.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.