IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.86   STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
785	 39.23	0	837918..838646	+	242	116617959	-	LEUM_0849	-	branched-chain amino acid permease (azaleucine resistance)
786	 33.64	-1	838648..838977	+	109	116617960	-	LEUM_0850	-	hypothetical protein
787	 36.57	0	839196..840275	+	359	116617961	-	LEUM_0851	-	GntR family transcriptional regulator
788	 38.74	0	840506..841930	+	474	116617962	-	LEUM_0852	-	L-arabinose isomerase
789	 42.68	+1	841942..843321	+	459	116617963	-	LEUM_0853	-	D-xylose proton-symporter
790	 39.20	0	843420..845039	+	539	116617964	-	LEUM_0854	-	L-ribulokinase (putative)
791	 40.43	0	845045..845749	+	234	116617965	araD	LEUM_0855	-	L-ribulose-5-phosphate 4-epimerase
792	 28.86	-2	845830..846657	-	275	116617966	-	LEUM_0856	-	XRE family transcriptional regulator
793	 38.71	0	846926..855391	+	2821	116617967	-	LEUM_0857	-	glycosyl hydrolase
794	 41.84	+1	855641..856510	+	289	116617968	-	LEUM_0858	-	Short-chain alcohol dehydrogenase
795	 28.46	-2	856584..856706	+	40	116617969	-	LEUM_0859	-	hypothetical protein
796	 39.26	0	856741..856875	+	44	116617970	-	LEUM_0860	-	hypothetical protein
797	 45.12	+2	857072..857317	+	81	116617971	-	LEUM_0861	-	hypothetical protein
798	 34.23	-1	857342..857896	+	184	116617972	-	LEUM_0862	-	hypothetical protein
799	 33.83	-1	857914..858114	+	66	116617973	-	LEUM_0863	-	hypothetical protein
800	 37.50	0	858142..858669	+	175	116617974	-	LEUM_0864	-	hypothetical protein
801	 35.19	0	858762..859406	+	214	116617975	-	LEUM_0865	-	hypothetical protein
802	 41.37	+1	859521..859769	+	82	116617976	-	LEUM_0866	-	hypothetical protein
803	 31.25	-1	859842..859985	+	47	116617977	-	LEUM_0867	-	hypothetical protein
804	 39.50	0	860082..860924	+	280	116617978	-	LEUM_0868	-	aldo/keto reductase
805	 37.63	0	860978..862351	+	457	116617979	-	LEUM_0869	-	D-xylose proton-symporter
806	 37.55	0	862374..863393	+	339	116617980	-	LEUM_0870	-	exopolysaccharide biosynthesis protein
807	 34.61	0	863428..864054	-	208	116617981	-	LEUM_0871	-	hypothetical protein
808	 33.33	-1	864044..865009	-	321	116617982	-	LEUM_0872	-	transcription regulator of beta-galactosidase gene
809	 35.16	0	865167..866648	+	493	116617983	-	LEUM_0873	-	hypothetical protein
810	 33.92	-1	866650..867849	+	399	116617984	-	LEUM_0874	-	major facilitator superfamily permease
811	 37.96	0	868004..870229	+	741	116617985	-	LEUM_0875	-	Beta-glucosidase-related glycosidase
812	 40.52	0	870370..870912	+	180	116617986	-	LEUM_0876	-	flavoprotein
813	 37.81	0	871023..871670	+	215	116617987	-	LEUM_0877	-	GTPase domain-containing protein
814	 36.19	0	871784..872659	+	291	116617988	-	LEUM_0878	-	metal-dependent membrane protease
815	 35.63	0	872688..873209	-	173	116617989	-	LEUM_0879	-	2'-5' RNA ligase
816	 38.53	0	873347..875269	-	640	116617990	-	LEUM_0880	-	Na+/xyloside symporter related transporter
817	 39.48	0	875441..876448	+	335	116617991	-	LEUM_0881	-	LacI family transcription regulator
818	 38.69	0	876526..878748	+	740	116617992	-	LEUM_0882	-	Alpha-galactosidase
819	 39.07	0	878779..879963	+	394	116617993	-	LEUM_0883	-	galactokinase
820	 37.78	0	879966..881471	+	501	116617994	-	LEUM_0884	-	galactose-1-phosphate uridylyltransferase
821	 36.22	0	881613..883865	+	750	116617995	-	LEUM_0885	-	excinuclease ATPase subunit
822	 33.96	-1	883924..885045	-	373	116617996	-	LEUM_0886	-	alpha/beta fold family hydrolase
823	 31.59	-1	885186..885758	+	190	116617997	-	LEUM_0887	-	transcriptional regulator
824	 32.07	-1	885883..886992	-	369	116617998	-	LEUM_0888	-	AraC family transcriptional regulator
825	 37.00	0	887465..888991	+	508	116617999	-	LEUM_0890	-	Alpha-L-arabinofuranosidase
826	 39.72	0	889113..890099	+	328	116618000	-	LEUM_0891	-	LacI family transcription regulator
827	 39.62	0	890102..891055	+	317	116618001	-	LEUM_0892	-	LacI family transcription regulator
828	 39.02	0	891162..892514	+	450	116618002	-	LEUM_0893	-	major facilitator superfamily permease
829	 38.69	0	892559..894817	+	752	116618003	-	LEUM_0894	-	maltose phosphorylase
830	 39.88	0	894834..895520	+	228	116618004	-	LEUM_0895	-	HAD family sugar phosphatase
831	 38.59	0	895571..896578	-	335	116618005	-	LEUM_0896	-	LacI family transcription regulator
832	 36.92	0	896689..898359	+	556	116618006	-	LEUM_0897	-	trehalose-6-phosphate hydrolase
833	 38.97	0	898441..899805	+	454	116618007	-	LEUM_0898	-	major facilitator superfamily permease
834	 38.98	0	899809..901491	+	560	116618008	-	LEUM_0899	-	trehalose-6-phosphate hydrolase
835	 34.96	0	901719..902579	+	286	116618009	-	LEUM_0900	-	beta-glucoside operon antiterminator
836	 41.87	+1	902678..904516	+	612	116618010	-	LEUM_0901	-	trehalose PTS trehalose component IIBC
837	 39.22	0	904531..905991	+	486	116618011	-	LEUM_0902	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
838	 32.97	-1	906043..906588	-	181	116618012	-	LEUM_0903	-	acetyltransferase
839	 37.06	0	906822..907277	+	151	116618013	-	LEUM_0904	-	GAF domain-containing protein
840	 36.91	0	907352..908806	-	484	116618014	-	LEUM_0905	-	polysaccharide transporter
841	 35.43	0	909745..910125	+	126	116618015	-	LEUM_0907	-	6-pyruvoyl-tetrahydropterin synthase
842	 32.18	-1	910129..911685	+	518	116618016	-	LEUM_0908	-	hypothetical protein
843	 37.71	0	911892..912713	+	273	116618017	-	LEUM_0909	-	short chain dehydrogenase
844	 36.99	0	912741..913478	+	245	116618018	-	LEUM_0910	-	ADP-ribose pyrophosphatase
845	 40.02	0	913544..914710	+	388	116618019	-	LEUM_0911	-	major facilitator superfamily permease
846	 40.86	0	914870..915919	+	349	116618020	-	LEUM_0912	-	threonine dehydrogenase related Zn-dependent dehydrogenase
847	 30.58	-2	916078..916839	+	253	116618021	-	LEUM_0913	-	hypothetical protein
848	 33.84	-1	916856..917443	+	195	116618022	-	LEUM_0914	-	ABC-type cobalt transport system, ATPase component
849	 35.76	0	917514..918089	+	191	116618023	-	LEUM_0915	-	Uracil-DNA glycosylase
850	 37.87	0	918155..918661	+	168	116618024	-	LEUM_0916	-	hypothetical protein
851	 34.96	0	919118..919792	+	224	116618025	-	LEUM_0917	-	HAD superfamily hydrolase
852	 33.17	-1	919808..921016	-	402	116618026	-	LEUM_0918	-	major facilitator superfamily permease
853	 39.84	0	921136..921642	-	168	116618027	-	LEUM_0919	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein
854	 39.60	0	921940..922338	+	132	116618028	-	LEUM_0920	-	pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein
855	 39.64	0	922352..923557	+	401	116618029	-	LEUM_0921	-	aminotransferase
856	 38.26	0	923636..924406	+	256	116618030	-	LEUM_0922	-	Short-chain alcohol dehydrogenase
857	 37.23	0	924434..925768	+	444	116618031	-	LEUM_0923	-	H+/gluconate symporter related permease
858	 41.53	+1	925825..927252	+	475	116618032	-	LEUM_0924	-	6-phosphogluconate dehydrogenase (decarboxylating)
859	 37.72	0	927347..928327	+	326	116618033	-	LEUM_0925	-	microcin C7 resistance MccF related protein
860	 36.69	0	928790..929296	-	168	116618034	-	LEUM_0926	-	acetyltransferase
861	 37.58	0	929498..930934	+	478	116618035	-	LEUM_0927	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
862	 35.53	0	930949..931266	+	105	116618036	celB	LEUM_0928	-	cellobiose phosphotransferase system IIB component
863	 33.08	-1	931302..933293	+	663	116618037	-	LEUM_0929	-	transcriptional antiterminator
864	 34.72	0	933290..933649	+	119	116618038	celC	LEUM_0930	-	cellobiose phosphotransferase system IIA component
865	 36.04	0	933606..934160	+	184	116618039	-	LEUM_0931	-	hypothetical protein
866	 37.04	0	934163..935512	+	449	116618040	celD	LEUM_0932	-	cellobiose phosphotransferase system IIC component
867	 39.08	0	936038..937324	+	428	116618041	-	LEUM_0933	-	xanthine/uracil permease
868	 34.95	0	937317..938429	+	370	116618042	-	LEUM_0934	-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligse II
869	 38.04	0	938441..939907	+	488	116618043	-	LEUM_0935	-	Acyl-CoA reductase (LuxC)
870	 39.06	0	939920..940687	+	255	116618044	-	LEUM_0936	-	3-oxoacyl-acyl carrier protein reductase
871	 35.88	0	940748..941257	+	169	116618045	-	LEUM_0937	-	hypothetical protein
872	 37.71	0	941265..942086	+	273	116618046	-	LEUM_0938	-	hydroxyethylthiazole kinase
873	 34.31	-1	942106..942411	+	101	116618047	-	LEUM_0939	-	cellobiose-specific PTS system IIB component
874	 33.33	-1	942429..943664	+	411	116618048	-	LEUM_0940	-	phosphotransferase system cellobiose-specific component IIC
875	 33.63	-1	943664..943999	+	111	116618049	-	LEUM_0941	-	cellobiose-specific PTS system IIA component
876	 34.25	-1	943992..945416	+	474	116618050	-	LEUM_0942	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
877	 37.14	0	945586..945690	+	34	116618051	-	LEUM_0943	-	holin-like toxin
878	 37.92	0	945983..946549	+	188	116618052	-	LEUM_0944	-	dinucleotide-binding protein
879	 37.50	0	946636..946995	-	119	116618053	-	LEUM_0945	-	MarR family transcriptional regulator
880	 32.26	-1	947188..947655	+	155	116618054	-	LEUM_0946	-	MarR family transcriptional regulator
881	 38.78	0	947645..948985	+	446	116618055	-	LEUM_0947	-	glutathione reductase
882	 40.58	0	949002..949940	+	312	116618056	-	LEUM_0948	-	NADPH:quinone reductase related Zn-dependent oxidoreductase
883	 35.83	0	949958..950317	+	119	116618057	-	LEUM_0949	-	hypothetical protein
884	 35.52	0	950388..951212	-	274	116618058	-	LEUM_0950	-	lipopolysaccharide biosynthesis glycosyltransferase
37.86	MEAN

3.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.