IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
650	 34.92	0	682702..684279	+	525	116617824	-	LEUM_0712	-	sucrose-6-phosphate hydrolase
651	 37.32	0	684485..687166	+	893	116617825	-	LEUM_0713	-	DNA polymerase I
652	 38.05	0	687200..688195	+	331	116617826	-	LEUM_0714	-	sortase (surface protein transpeptidase)
653	 35.28	0	688346..689575	+	409	116617827	-	LEUM_0715	-	HerA helicase
654	 41.89	+1	689665..690003	+	112	116617828	-	LEUM_0716	-	glutamine synthetase repressor
655	 41.13	0	690016..691362	+	448	116617829	-	LEUM_0717	-	L-glutamine synthetase
656	 43.62	+1	691630..692115	+	161	116617830	-	LEUM_0718	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
657	 38.29	0	692112..693221	+	369	116617831	-	LEUM_0719	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
658	 35.73	0	693205..693954	+	249	116617832	-	LEUM_0720	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
659	 37.04	0	693956..694225	+	89	116617833	-	LEUM_0721	-	phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
660	 37.67	0	694222..694890	+	222	116617834	-	LEUM_0722	-	phosphoribosylformylglycinamidine synthase domain-containing protein
661	 41.45	+1	694895..697111	+	738	116617835	-	LEUM_0723	-	phosphoribosylformylglycinamidine synthase domain-containing protein
662	 40.53	0	697090..698700	+	536	116617836	-	LEUM_0724	-	amidophosphoribosyltransferase
663	 42.00	+1	698697..699734	+	345	116617837	-	LEUM_0725	-	phosphoribosylformylglycinamidine cyclo-ligase
664	 38.41	0	699728..700318	+	196	116617838	-	LEUM_0726	-	phosphoribosylglycinamide formyltransferase
665	 38.83	0	700315..701841	+	508	116617839	-	LEUM_0727	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
666	 36.15	0	701944..703116	+	390	116617840	-	LEUM_0728	-	DNA repair exonuclease
667	 35.36	0	703106..705469	+	787	116617841	-	LEUM_0729	-	DNA repair ATPase
668	 38.49	0	705497..706447	+	316	116617842	-	LEUM_0730	-	HD-superfamily hydrolase
669	 29.56	-2	706472..706630	-	52	116617843	-	LEUM_0731	-	hypothetical protein
670	 39.46	0	706867..708156	+	429	116617844	-	LEUM_0732	-	hypothetical protein
671	 37.71	0	708181..709506	+	441	116617845	-	LEUM_0733	-	folylpolyglutamate synthase
672	 40.26	0	709655..710752	+	365	116617846	-	LEUM_0734	-	tRNA-dihydrouridine synthase
673	 38.29	0	710809..712281	+	490	116617847	-	LEUM_0735	-	UDP-N-acetylmuramyl tripeptide synthase
674	 37.69	0	712388..713398	+	336	116617848	-	LEUM_0736	-	lipoate-protein ligase
675	 42.30	+1	713391..714527	+	378	116617849	-	LEUM_0737	-	acetoin dehydrogenase complex, E1 component, alpha subunit
676	 42.41	+1	714529..715509	+	326	116617850	-	LEUM_0738	-	acetoin dehydrogenase complex, E1 component, beta subunit
677	 43.06	+1	715502..716797	+	431	116617851	-	LEUM_0739	-	acetoin/pyruvate dehydrogenase complex, E2 component, dihydrolipoamide succinyltransferase
678	 42.55	+1	716800..718209	+	469	116617852	-	LEUM_0740	-	dihydrolipoamide dehydrogenase
679	 39.14	0	718258..719049	+	263	116617853	-	LEUM_0741	-	alpha/beta fold family hydrolase
680	 33.03	-1	719199..720872	+	557	116617854	-	LEUM_0742	-	glycerophosphoryl diester phosphodiesterase
681	 40.14	0	720929..722104	-	391	116617855	-	LEUM_0743	-	DNA-entry nuclease
682	 39.18	0	722873..723043	+	56	116617856	-	LEUM_0745	-	hypothetical protein
683	 39.33	0	723211..723744	+	177	116617857	-	LEUM_0746	-	hypothetical protein
684	 40.82	0	723912..725996	+	694	116617858	-	LEUM_0747	-	DNA topoisomerase I
685	 39.64	0	726022..726909	-	295	116617859	-	LEUM_0748	-	hypothetical protein
686	 35.32	0	727010..727513	+	167	116617860	-	LEUM_0749	-	hypothetical protein
687	 38.06	0	727513..728316	+	267	116617861	-	LEUM_0750	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
688	 35.93	0	728421..729575	+	384	116617862	-	LEUM_0751	-	isochorismate synthase
689	 38.07	0	729553..731178	+	541	116617863	-	LEUM_0752	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
690	 38.20	0	731175..731975	+	266	116617864	-	LEUM_0753	-	alpha/beta fold family hydrolase
691	 37.42	0	731962..733062	+	366	116617865	-	LEUM_0754	-	O-succinylbenzoate synthase
692	 37.44	0	733076..734341	+	421	116617866	-	LEUM_0755	-	TPR repeat-containing protein
693	 39.30	0	734381..735586	+	401	116617867	-	LEUM_0756	-	tRNA nucleotidyltransferase/poly(A) polymerase
694	 40.96	0	735573..736070	+	165	116617868	-	LEUM_0757	-	dihydrofolate reductase
695	 40.12	0	736080..736934	+	284	116617869	-	LEUM_0758	-	hypothetical protein
696	 39.41	0	737114..738100	+	328	116617870	-	LEUM_0759	-	inosine-uridine nucleoside N-ribohydrolase
697	 40.07	0	738097..738645	+	182	116617871	-	LEUM_0760	-	hypothetical protein
698	 35.09	0	738754..739665	+	303	116617872	-	LEUM_0761	-	lysophospholipase L1 related esterase
699	 36.42	0	739647..740261	+	204	116617873	-	LEUM_0762	-	hypothetical protein
700	 33.77	-1	740248..740475	+	75	116617874	-	LEUM_0763	-	hypothetical protein
701	 40.35	0	740498..741352	+	284	116617875	-	LEUM_0764	-	GTP-binding protein YlqF
702	 38.58	0	741345..742106	+	253	116617876	-	LEUM_0765	-	RNase HII
703	 37.85	0	742090..742731	-	213	116617877	-	LEUM_0766	-	ABC-type cobalt transport system, permease component CbiQ related transporter
704	 37.19	0	742728..744101	-	457	116617878	-	LEUM_0767	-	ABC-type cobalt transport system, ATPase component
705	 36.39	0	744132..744425	-	97	116617879	-	LEUM_0768	-	hypothetical protein
706	 41.41	+1	744422..745003	-	193	116617880	-	LEUM_0769	-	hypothetical protein
707	 38.99	0	745663..746352	+	229	116617881	-	LEUM_0770	-	SAM-dependent methyltransferase
708	 41.73	+1	746349..747134	+	261	116617882	-	LEUM_0771	-	hypothetical protein
709	 38.35	0	747179..748414	+	411	116617883	-	LEUM_0772	-	peptidase T
710	 37.37	0	748467..748664	-	65	116617884	-	LEUM_0773	-	hypothetical protein
711	 37.86	0	748858..752196	+	1112	116617885	-	LEUM_0774	-	DNA polymerase III catalytic subunit, DnaE type
712	 41.84	+1	752292..753713	+	473	116617886	-	LEUM_0775	-	pyruvate kinase
713	 41.10	0	753877..755073	+	398	116617887	-	LEUM_0776	-	ammonia permease
714	 40.08	0	755177..756169	+	330	116617888	-	LEUM_0777	-	phosphate starvation-inducible protein PhoH, ATPase
715	 36.23	0	756169..756651	+	160	116617889	-	LEUM_0778	-	metal-dependent hydrolase
716	 38.68	0	756635..757102	+	155	116617890	-	LEUM_0779	-	diacylglycerol kinase
717	 40.24	0	757144..758055	+	303	116617891	-	LEUM_0780	-	GTPase
718	 36.79	0	758125..758904	+	259	116617892	-	LEUM_0781	-	DNA replication and repair protein RecO
719	 38.84	0	758907..759869	+	320	116617893	-	LEUM_0782	-	asparaginase
720	 34.64	0	759894..760427	+	177	116617894	-	LEUM_0783	-	phosphoglycerate mutase family protein
721	 40.12	0	760458..761813	-	451	116617895	-	LEUM_0784	-	aspartate kinase
722	 41.07	0	761845..762723	-	292	116617896	-	LEUM_0785	-	homoserine kinase
723	 41.31	+1	762720..763997	-	425	116617897	-	LEUM_0786	-	homoserine dehydrogenase
724	 36.97	0	764121..765578	+	485	116617898	-	LEUM_0787	-	threonine synthase
725	 40.96	0	765674..766906	+	410	116617899	-	LEUM_0788	-	serine hydroxymethyltransferase
726	 37.80	0	766944..767480	+	178	116617900	-	LEUM_0789	-	5-formyltetrahydrofolate cyclo-ligase
727	 38.18	0	767579..768775	+	398	116617901	-	LEUM_0790	-	cyclopropane-fatty-acyl-phospholipid synthase
728	 36.33	0	768843..769676	-	277	116617902	-	LEUM_0791	-	aldo/keto reductase related protein
729	 38.13	0	769799..770716	-	305	116617903	-	LEUM_0792	-	hypothetical protein
730	 40.80	0	770716..771411	-	231	116617904	-	LEUM_0793	-	ribose-5-phosphate isomerase
731	 40.87	0	771420..772361	-	313	116617905	-	LEUM_0794	-	ribokinase family sugar kinase
732	 38.67	0	772475..773485	-	336	116617906	-	LEUM_0795	-	LacI family transcription regulator
733	 39.30	0	773639..774862	+	407	116617907	-	LEUM_0796	-	nucleoside permease
734	 39.44	0	774893..775825	+	310	116617908	-	LEUM_0797	-	ribonucleoside hydrolase RihC
735	 39.48	0	775827..776786	+	319	116617909	-	LEUM_0798	-	inosine-uridine nucleoside N-ribohydrolase
736	 40.81	0	776909..778192	+	427	116617910	-	LEUM_0799	-	chloride channel protein EriC
737	 37.38	0	778257..779219	-	320	116617911	-	LEUM_0800	-	sugar phosphate isomerase
738	 39.79	0	779197..780048	-	283	116617912	-	LEUM_0801	-	2-dehydro-3-deoxyphosphooctonate aldolase
739	 34.89	0	780305..780754	+	149	116617913	-	LEUM_0802	-	Fe2+/Zn2+ uptake regulation protein
740	 34.23	-1	780990..781880	+	296	116617914	-	LEUM_0803	-	ABC-type metal ion transport system, periplasmic component/surface adhesin
741	 35.95	0	781888..782574	+	228	116617915	-	LEUM_0804	-	ABC-type Mn/Zn transport systems, ATPase component
742	 34.21	-1	782567..783367	+	266	116617916	-	LEUM_0805	-	ABC-type Mn2+/Zn2+ transport systems, permease component
743	 38.51	0	783463..784794	+	443	116617917	-	LEUM_0806	-	glutathione reductase
744	 35.36	0	784871..786544	-	557	116617918	-	LEUM_0807	-	hypothetical protein
745	 33.27	-1	786739..788439	+	566	116617919	-	LEUM_0808	-	hypothetical protein
746	 38.45	0	788486..789502	-	338	116617920	-	LEUM_0809	-	adenosine deaminase
747	 36.38	0	789750..791162	+	470	116617921	-	LEUM_0810	-	deoxyribodipyrimidine photo-lyase type I
748	 35.63	0	791189..792235	+	348	116617922	-	LEUM_0811	-	peptide ABC transporter permease
749	 37.07	0	792240..792935	+	231	116617923	-	LEUM_0812	-	peptide ABC transporter ATPase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.