IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
622	 40.64	0	651180..652985	+	601	116617796	-	LEUM_0684	-	D-fructose-6-phosphate amidotransferase
623	 41.15	0	653103..653882	+	259	116617797	-	LEUM_0685	-	undecaprenyl pyrophosphate synthetase
624	 38.11	0	653882..654676	+	264	116617798	-	LEUM_0686	-	CDP-diglyceride synthetase
625	 38.84	0	654730..655983	+	417	116617799	-	LEUM_0687	-	membrane-associated Zn-dependent protease
626	 40.72	0	656034..657752	+	572	116617800	-	LEUM_0688	-	prolyl-tRNA synthetase
627	 39.11	0	657808..662121	+	1437	116617801	-	LEUM_0689	-	DNA polymerase III catalytic subunit, PolC type
628	 33.09	-1	662195..662602	+	135	116617802	-	LEUM_0690	-	hypothetical protein
629	 43.09	+1	662733..663644	+	303	116617803	-	LEUM_0691	-	ribokinase family sugar kinase
630	 41.68	+1	663644..665056	+	470	116617804	-	LEUM_0692	-	tRNA and rRNA cytosine-C5-methylase
631	 37.90	0	665213..666328	+	371	116617805	-	LEUM_0693	-	ABC transporter periplasmic protein
632	 32.46	-1	666479..666823	+	114	116617806	-	LEUM_0694	-	hypothetical protein
633	 37.46	0	666868..667521	+	217	116617807	-	LEUM_0695	-	phosphoglycerate mutase family protein
634	 38.19	0	667521..669908	+	795	116617808	-	LEUM_0696	-	ATP-dependent RecD/TraA family DNA helicase
635	 40.95	0	669958..670929	+	323	116617809	-	LEUM_0697	-	phosphoribosylpyrophosphate synthetase
636	 40.52	0	670926..671816	+	296	116617810	-	LEUM_0698	-	lysophospholipase L1 related esterase
637	 39.27	0	671818..672810	+	330	116617811	-	LEUM_0699	-	aryl-alcohol dehydrogenase
638	 38.96	0	673031..674275	+	414	116617812	-	LEUM_0700	-	phosphoribosylamine--glycine ligase
639	 41.14	0	674288..675952	+	554	116617813	-	LEUM_0701	-	formate-tetrahydrofolate ligase
640	 38.81	0	675984..676859	-	291	116617814	-	LEUM_0702	-	Co/Zn/Cd cation transporter
641	 40.00	0	677035..677259	+	74	116617815	-	LEUM_0703	-	cold-shock DNA-binding protein family protein
642	 36.40	0	677259..677813	+	184	116617816	-	LEUM_0704	-	NUDIX family hydrolase
643	 36.05	0	677817..678110	+	97	116617817	-	LEUM_0705	-	small membrane protein
644	 38.96	0	678128..678802	+	224	116617818	-	LEUM_0706	-	methylthioadenosine nucleosidase
645	 38.96	0	678948..679604	+	218	116617819	-	LEUM_0707	-	EMAP domain-containing protein
646	 32.75	-1	679635..679805	+	56	116617820	-	LEUM_0708	-	hypothetical protein
647	 38.35	0	679802..681136	+	444	116617821	murC	LEUM_0709	-	UDP-N-acetylmuramate--L-alanine ligase
648	 40.69	0	681208..681927	+	239	116617822	-	LEUM_0710	-	integral membrane protein, interacts with FtsH
649	 31.57	-1	682065..682460	+	131	116617823	-	LEUM_0711	-	hypothetical protein
650	 34.92	0	682702..684279	+	525	116617824	-	LEUM_0712	-	sucrose-6-phosphate hydrolase
651	 37.32	0	684485..687166	+	893	116617825	-	LEUM_0713	-	DNA polymerase I
652	 38.05	0	687200..688195	+	331	116617826	-	LEUM_0714	-	sortase (surface protein transpeptidase)
653	 35.28	0	688346..689575	+	409	116617827	-	LEUM_0715	-	HerA helicase
654	 41.89	+1	689665..690003	+	112	116617828	-	LEUM_0716	-	glutamine synthetase repressor
655	 41.13	0	690016..691362	+	448	116617829	-	LEUM_0717	-	L-glutamine synthetase
656	 43.62	+1	691630..692115	+	161	116617830	-	LEUM_0718	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
657	 38.29	0	692112..693221	+	369	116617831	-	LEUM_0719	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
658	 35.73	0	693205..693954	+	249	116617832	-	LEUM_0720	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
659	 37.04	0	693956..694225	+	89	116617833	-	LEUM_0721	-	phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
660	 37.67	0	694222..694890	+	222	116617834	-	LEUM_0722	-	phosphoribosylformylglycinamidine synthase domain-containing protein
661	 41.45	+1	694895..697111	+	738	116617835	-	LEUM_0723	-	phosphoribosylformylglycinamidine synthase domain-containing protein
662	 40.53	0	697090..698700	+	536	116617836	-	LEUM_0724	-	amidophosphoribosyltransferase
663	 42.00	+1	698697..699734	+	345	116617837	-	LEUM_0725	-	phosphoribosylformylglycinamidine cyclo-ligase
664	 38.41	0	699728..700318	+	196	116617838	-	LEUM_0726	-	phosphoribosylglycinamide formyltransferase
665	 38.83	0	700315..701841	+	508	116617839	-	LEUM_0727	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
666	 36.15	0	701944..703116	+	390	116617840	-	LEUM_0728	-	DNA repair exonuclease
667	 35.36	0	703106..705469	+	787	116617841	-	LEUM_0729	-	DNA repair ATPase
668	 38.49	0	705497..706447	+	316	116617842	-	LEUM_0730	-	HD-superfamily hydrolase
669	 29.56	-2	706472..706630	-	52	116617843	-	LEUM_0731	-	hypothetical protein
670	 39.46	0	706867..708156	+	429	116617844	-	LEUM_0732	-	hypothetical protein
671	 37.71	0	708181..709506	+	441	116617845	-	LEUM_0733	-	folylpolyglutamate synthase
672	 40.26	0	709655..710752	+	365	116617846	-	LEUM_0734	-	tRNA-dihydrouridine synthase
673	 38.29	0	710809..712281	+	490	116617847	-	LEUM_0735	-	UDP-N-acetylmuramyl tripeptide synthase
674	 37.69	0	712388..713398	+	336	116617848	-	LEUM_0736	-	lipoate-protein ligase
675	 42.30	+1	713391..714527	+	378	116617849	-	LEUM_0737	-	acetoin dehydrogenase complex, E1 component, alpha subunit
676	 42.41	+1	714529..715509	+	326	116617850	-	LEUM_0738	-	acetoin dehydrogenase complex, E1 component, beta subunit
677	 43.06	+1	715502..716797	+	431	116617851	-	LEUM_0739	-	acetoin/pyruvate dehydrogenase complex, E2 component, dihydrolipoamide succinyltransferase
678	 42.55	+1	716800..718209	+	469	116617852	-	LEUM_0740	-	dihydrolipoamide dehydrogenase
679	 39.14	0	718258..719049	+	263	116617853	-	LEUM_0741	-	alpha/beta fold family hydrolase
680	 33.03	-1	719199..720872	+	557	116617854	-	LEUM_0742	-	glycerophosphoryl diester phosphodiesterase
681	 40.14	0	720929..722104	-	391	116617855	-	LEUM_0743	-	DNA-entry nuclease
682	 39.18	0	722873..723043	+	56	116617856	-	LEUM_0745	-	hypothetical protein
683	 39.33	0	723211..723744	+	177	116617857	-	LEUM_0746	-	hypothetical protein
684	 40.82	0	723912..725996	+	694	116617858	-	LEUM_0747	-	DNA topoisomerase I
685	 39.64	0	726022..726909	-	295	116617859	-	LEUM_0748	-	hypothetical protein
686	 35.32	0	727010..727513	+	167	116617860	-	LEUM_0749	-	hypothetical protein
687	 38.06	0	727513..728316	+	267	116617861	-	LEUM_0750	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
688	 35.93	0	728421..729575	+	384	116617862	-	LEUM_0751	-	isochorismate synthase
689	 38.07	0	729553..731178	+	541	116617863	-	LEUM_0752	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
690	 38.20	0	731175..731975	+	266	116617864	-	LEUM_0753	-	alpha/beta fold family hydrolase
691	 37.42	0	731962..733062	+	366	116617865	-	LEUM_0754	-	O-succinylbenzoate synthase
692	 37.44	0	733076..734341	+	421	116617866	-	LEUM_0755	-	TPR repeat-containing protein
693	 39.30	0	734381..735586	+	401	116617867	-	LEUM_0756	-	tRNA nucleotidyltransferase/poly(A) polymerase
694	 40.96	0	735573..736070	+	165	116617868	-	LEUM_0757	-	dihydrofolate reductase
695	 40.12	0	736080..736934	+	284	116617869	-	LEUM_0758	-	hypothetical protein
696	 39.41	0	737114..738100	+	328	116617870	-	LEUM_0759	-	inosine-uridine nucleoside N-ribohydrolase
697	 40.07	0	738097..738645	+	182	116617871	-	LEUM_0760	-	hypothetical protein
698	 35.09	0	738754..739665	+	303	116617872	-	LEUM_0761	-	lysophospholipase L1 related esterase
699	 36.42	0	739647..740261	+	204	116617873	-	LEUM_0762	-	hypothetical protein
700	 33.77	-1	740248..740475	+	75	116617874	-	LEUM_0763	-	hypothetical protein
701	 40.35	0	740498..741352	+	284	116617875	-	LEUM_0764	-	GTP-binding protein YlqF
702	 38.58	0	741345..742106	+	253	116617876	-	LEUM_0765	-	RNase HII
703	 37.85	0	742090..742731	-	213	116617877	-	LEUM_0766	-	ABC-type cobalt transport system, permease component CbiQ related transporter
704	 37.19	0	742728..744101	-	457	116617878	-	LEUM_0767	-	ABC-type cobalt transport system, ATPase component
705	 36.39	0	744132..744425	-	97	116617879	-	LEUM_0768	-	hypothetical protein
706	 41.41	+1	744422..745003	-	193	116617880	-	LEUM_0769	-	hypothetical protein
707	 38.99	0	745663..746352	+	229	116617881	-	LEUM_0770	-	SAM-dependent methyltransferase
708	 41.73	+1	746349..747134	+	261	116617882	-	LEUM_0771	-	hypothetical protein
709	 38.35	0	747179..748414	+	411	116617883	-	LEUM_0772	-	peptidase T
710	 37.37	0	748467..748664	-	65	116617884	-	LEUM_0773	-	hypothetical protein
711	 37.86	0	748858..752196	+	1112	116617885	-	LEUM_0774	-	DNA polymerase III catalytic subunit, DnaE type
712	 41.84	+1	752292..753713	+	473	116617886	-	LEUM_0775	-	pyruvate kinase
713	 41.10	0	753877..755073	+	398	116617887	-	LEUM_0776	-	ammonia permease
714	 40.08	0	755177..756169	+	330	116617888	-	LEUM_0777	-	phosphate starvation-inducible protein PhoH, ATPase
715	 36.23	0	756169..756651	+	160	116617889	-	LEUM_0778	-	metal-dependent hydrolase
716	 38.68	0	756635..757102	+	155	116617890	-	LEUM_0779	-	diacylglycerol kinase
717	 40.24	0	757144..758055	+	303	116617891	-	LEUM_0780	-	GTPase
718	 36.79	0	758125..758904	+	259	116617892	-	LEUM_0781	-	DNA replication and repair protein RecO
719	 38.84	0	758907..759869	+	320	116617893	-	LEUM_0782	-	asparaginase
720	 34.64	0	759894..760427	+	177	116617894	-	LEUM_0783	-	phosphoglycerate mutase family protein
721	 40.12	0	760458..761813	-	451	116617895	-	LEUM_0784	-	aspartate kinase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.