IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
523	 34.43	-1	552171..553442	+	423	116617697	-	LEUM_0581	-	Zn-dependent peptidase
524	 36.42	0	553457..554332	+	291	116617698	-	LEUM_0582	-	Xre-like DNA-binding protein
525	 36.43	0	554343..554924	+	193	116617699	-	LEUM_0583	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
526	 41.97	+1	555064..556221	+	385	116617700	-	LEUM_0584	-	RecA protein
527	 37.66	0	556304..556996	+	230	116617701	-	LEUM_0585	-	DNA-binding response regulator
528	 39.49	0	557237..558145	+	302	116617702	-	LEUM_0586	-	ABC-type phosphate transport system, periplasmic component
529	 31.42	-1	558310..558570	+	86	116617703	-	LEUM_0587	-	hypothetical protein
530	 38.43	0	558588..559568	+	326	116617704	-	LEUM_0588	-	Signal transduction histidine kinase
531	 41.95	+1	559710..560591	+	293	116617705	-	LEUM_0589	-	ABC-type phosphate transport system, periplasmic component
532	 39.72	0	560644..561567	+	307	116617706	-	LEUM_0590	-	ABC-type phosphate transport system, permease component
533	 38.53	0	561567..562451	+	294	116617707	-	LEUM_0591	-	ABC-type phosphate transport system, permease component
534	 38.67	0	562459..563301	+	280	116617708	-	LEUM_0592	-	ABC-type phosphate transport system, ATPase component
535	 39.69	0	563298..564068	+	256	116617709	-	LEUM_0593	-	ABC-type phosphate transport system, ATPase component
536	 39.41	0	564127..564801	+	224	116617710	-	LEUM_0594	-	phosphate uptake regulator, PhoU
537	 33.42	-1	564889..565989	-	366	116617711	-	LEUM_0595	-	di- and tricarboxylate transporter
538	 33.05	-1	566370..566726	+	118	116617712	-	LEUM_0596	-	hypothetical protein
539	 39.96	0	566728..567693	+	321	116617713	-	LEUM_0597	-	Serine kinase of the HPr protein, regulates carbohydrate metabolism
540	 43.52	+1	567686..568696	+	336	116617714	-	LEUM_0598	-	glycerol-3-phosphate dehydrogenase
541	 38.70	0	568719..569594	+	291	116617715	-	LEUM_0599	-	UDP-glucose pyrophosphorylase
542	 40.15	0	569708..570661	+	317	116617716	-	LEUM_0600	-	thioredoxin reductase
543	 38.54	0	570708..571091	-	127	116617717	-	LEUM_0601	-	methylmalonyl-CoA epimerase
544	 35.37	0	571142..571879	-	245	116617718	-	LEUM_0602	-	hypothetical protein
545	 42.18	+1	571882..572898	-	338	116617719	-	LEUM_0603	-	threonine dehydrogenase related Zn-dependent dehydrogenase
546	 37.22	0	573045..574022	+	325	116617720	-	LEUM_0604	-	LacI family transcription regulator
547	 35.15	0	574075..574734	+	219	116617721	-	LEUM_0605	-	hypothetical protein
548	 39.92	0	574777..576477	+	566	116617722	-	LEUM_0606	-	alpha-phosphoglucomutase
549	 43.61	+1	576601..576960	+	119	116617723	rplS	LEUM_0607	-	50S ribosomal protein L19
550	 38.38	0	577309..578022	-	237	116617724	-	LEUM_0608	-	hydrocarbon binding protein
551	 38.01	0	578071..578946	+	291	116617725	-	LEUM_0609	-	glutamate racemase
552	 37.95	0	578943..579548	+	201	116617726	-	LEUM_0610	-	xanthosine triphosphate pyrophosphatase
553	 38.92	0	579548..580084	+	178	116617727	-	LEUM_0611	-	phosphoesterase
554	 40.91	0	580220..581275	+	351	116617728	ruvB	LEUM_0612	-	Holliday junction DNA helicase B
555	 36.01	0	581272..582129	+	285	116617729	-	LEUM_0613	-	phosphoesterase or phosphohydrolase
556	 38.62	0	582167..583300	+	377	116617730	-	LEUM_0614	-	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)
557	 37.52	0	583503..584528	+	341	116617731	-	LEUM_0615	-	glycerophosphoryl diester phosphodiesterase
558	 40.27	0	584604..585194	+	196	116617732	-	LEUM_0616	-	Holliday junction resolvasome, DNA-binding subunit
559	 34.60	0	585435..586067	+	210	116617733	-	LEUM_0617	-	deoxynucleoside kinase
560	 33.85	-1	586101..586484	-	127	116617734	-	LEUM_0618	-	large-conductance mechanosensitive channel
561	 40.04	0	586656..588131	+	491	116617735	-	LEUM_0619	-	peptide ABC transporter permease
562	 37.41	0	588192..588854	+	220	116617736	-	LEUM_0620	-	peptide ABC transporter ATPase
563	 37.56	0	588960..589574	+	204	116617737	-	LEUM_0621	-	hypothetical protein
564	 41.46	+1	589787..590401	+	204	116617738	-	LEUM_0623	-	hypothetical protein
565	 39.73	0	590439..591095	-	218	116617739	-	LEUM_0624	-	hypothetical protein
566	 37.70	0	591382..593211	+	609	116617740	-	LEUM_0625	-	metallo-beta-lactamase superfamily hydrolase
567	 37.55	0	593317..594240	+	307	116617741	-	LEUM_0626	-	TPR repeat-containing protein
568	 43.35	+1	594404..595591	+	395	116617742	-	LEUM_0627	-	elongation factor Tu
569	 31.85	-1	595636..595770	-	44	116617743	-	LEUM_0628	-	hypothetical protein
570	 39.32	0	595908..596642	+	244	116617744	-	LEUM_0629	-	ABC-type polar amino acid transport system, ATPase component
571	 39.42	0	596652..597341	+	229	116617745	-	LEUM_0630	-	ribose-5-phosphate isomerase
572	 39.23	0	597416..597856	+	146	116617746	-	LEUM_0631	-	UspA family nucleotide-binding protein
573	 35.33	0	597894..598646	-	250	116617747	-	LEUM_0632	-	peptidyl-prolyl cis-trans isomerase
574	 39.27	0	598646..599167	-	173	116617748	-	LEUM_0633	-	SAM-dependent methyltransferase
575	 33.64	-1	599151..599804	-	217	116617749	-	LEUM_0634	-	membrane-associated phospholipid phosphatase
576	 39.27	0	600145..602571	+	808	116617750	leuS	LEUM_0635	-	leucyl-tRNA synthetase
577	 37.86	0	602667..604610	+	647	116617751	-	LEUM_0636	-	polysaccharide transporter
578	 35.81	0	604745..605593	+	282	116617752	-	LEUM_0637	-	hypothetical protein
579	 35.41	0	605595..606509	+	304	116617753	-	LEUM_0638	-	hypothetical protein
580	 38.80	0	606546..607094	+	182	116617754	-	LEUM_0639	-	hypothetical protein
581	 41.39	+1	607094..607987	+	297	116617755	-	LEUM_0640	-	heat shock protein HtpX
582	 39.47	0	608099..609076	+	325	116617756	-	LEUM_0641	-	hypothetical protein
583	 41.94	+1	609104..609289	+	61	116617757	-	LEUM_0642	-	4-oxalocrotonate tautomerase
584	 42.69	+1	609491..610954	+	487	116617758	-	LEUM_0643	-	cell wall-associated hydrolase
585	 36.36	0	611488..611718	+	76	116617759	-	LEUM_0644	-	hypothetical protein
586	 42.87	+1	612223..613365	+	380	116617760	-	LEUM_0645	-	inosine-5'-monophosphate dehydrogenase
587	 41.03	0	613408..614394	+	328	116617761	-	LEUM_0646	-	IMP dehydrogenase/GMP reductase
588	 30.99	-2	616035..616205	-	56	116617762	-	LEUM_0648	-	hypothetical protein
589	 42.98	+1	617155..617382	+	75	116617763	-	LEUM_0649	-	hypothetical protein
590	 33.66	-1	617535..618149	+	204	116617764	recU	LEUM_0650	-	Holliday junction-specific endonuclease
591	 41.36	+1	618171..620363	+	730	116617765	-	LEUM_0651	-	membrane carboxypeptidase (penicillin-binding protein)
592	 37.57	0	620422..620988	+	188	116617766	-	LEUM_0652	-	hypothetical protein
593	 41.85	+1	621064..621462	+	132	116617767	-	LEUM_0653	-	cell division initiation protein
594	 38.02	0	622007..623479	+	490	116617768	-	LEUM_0655	-	ABC-type amino acid transport system, permease and periplasmic component
595	 39.94	0	623535..624563	-	342	116617769	-	LEUM_0656	-	3-carboxymuconate cyclase
596	 36.88	0	624742..625896	+	384	116617770	-	LEUM_0657	-	permease
597	 38.01	0	625893..626405	+	170	116617771	-	LEUM_0658	-	rRNA methylase (SpoU class)
598	 39.42	0	626705..629071	+	788	116617772	-	LEUM_0660	-	DNA segregation ATPase FtsK/SpoIIIE related protein
599	 29.17	-2	629150..629269	+	39	116617773	-	LEUM_0661	-	hypothetical protein
600	 39.20	0	629599..631557	+	652	116617774	-	LEUM_0662	-	threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
601	 38.36	0	631682..633055	+	457	116617775	-	LEUM_0663	-	gamma-aminobutyrate permease related permease
602	 37.78	0	633178..633852	+	224	116617776	-	LEUM_0664	-	hypothetical protein
603	 35.16	0	633890..634435	+	181	116617777	-	LEUM_0665	-	hypothetical protein
604	 39.03	0	634619..635461	+	280	116617778	-	LEUM_0666	-	fructosamine-3-kinase
605	 39.13	0	635800..637092	+	430	116617779	-	LEUM_0667	-	diaminopimelate decarboxylase
606	 41.88	+1	637094..637795	+	233	116617780	-	LEUM_0668	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
607	 40.95	0	637795..638949	+	384	116617781	-	LEUM_0669	-	metal-dependent amidase/aminoacylase/carboxypeptidase
608	 39.79	0	638952..639818	+	288	116617782	-	LEUM_0670	-	dihydrodipicolinate synthase
609	 41.63	+1	639818..640540	+	240	116617783	-	LEUM_0671	-	dihydrodipicolinate reductase
610	 33.96	-1	640630..641433	+	267	116617784	-	LEUM_0672	-	hypothetical protein
611	 38.77	0	641484..642053	+	189	116617785	-	LEUM_0673	-	hypothetical protein
612	 37.13	0	642161..642844	+	227	116617786	-	LEUM_0674	-	membrane-associated serine protease
613	 30.43	-2	642841..643047	+	68	116617787	-	LEUM_0675	-	hypothetical protein
614	 41.41	+1	643209..644174	+	321	116617788	-	LEUM_0676	-	glucokinase
615	 35.67	0	644230..644829	-	199	116617789	-	LEUM_0677	-	dithiol-disulfide isomerase
616	 37.15	0	644971..645546	+	191	116617790	-	LEUM_0678	-	RelA_SpoT domain-containing protein
617	 39.37	0	645543..646337	+	264	116617791	ppnK	LEUM_0679	-	inorganic polyphosphate/ATP-NAD kinase
618	 38.44	0	646492..647391	+	299	116617792	-	LEUM_0680	-	pseudouridylate synthase, 23S RNA-specific
619	 40.07	0	647395..648759	+	454	116617793	-	LEUM_0681	-	transcriptional regulator
620	 37.95	0	648814..649311	-	165	116617794	-	LEUM_0682	-	hypothetical protein
621	 40.88	0	649316..650971	-	551	116617795	-	LEUM_0683	-	adenine deaminase
622	 40.64	0	651180..652985	+	601	116617796	-	LEUM_0684	-	D-fructose-6-phosphate amidotransferase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.