IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
484	 36.46	0	505649..506383	+	244	116617658	-	LEUM_0542	-	metal-dependent membrane protease
485	 41.53	+1	506424..507521	-	365	116617659	-	LEUM_0543	-	Mername-AA019 peptidase
486	 39.19	0	507722..508729	+	335	116617660	-	LEUM_0544	-	LacI family transcription regulator
487	 36.98	0	508838..510703	+	621	116617661	-	LEUM_0545	-	acyltransferase
488	 37.49	0	510817..512163	+	448	116617662	-	LEUM_0546	-	major facilitator superfamily permease
489	 35.21	0	512336..513292	+	318	116617663	-	LEUM_0547	-	Kef-type K+ transport systems, membrane component
490	 36.05	0	513401..514321	+	306	116617664	-	LEUM_0548	-	DMT family permease
491	 38.47	0	514401..515120	+	239	116617665	-	LEUM_0549	-	Alpha-acetolactate decarboxylase
492	 37.31	0	515191..516045	-	284	116617666	-	LEUM_0550	-	transcriptional regulator
493	 43.34	+1	516175..517083	+	302	116617667	-	LEUM_0551	-	6-phosphogluconate dehydrogenase-like protein
494	 41.26	+1	517191..518729	+	512	116617668	-	LEUM_0552	-	gluconate kinase
495	 40.04	0	518831..520201	+	456	116617669	-	LEUM_0553	-	H+/gluconate symporter related permease
496	 41.02	0	520425..521855	+	476	116617670	-	LEUM_0554	-	amino acid transporter
497	 39.78	0	521930..523264	+	444	116617671	-	LEUM_0555	-	4-aminobutyrate aminotransferase
498	 40.57	0	523521..526202	+	893	116617672	-	LEUM_0556	-	alanyl-tRNA synthetase
499	 33.73	-1	526299..526550	+	83	116617673	-	LEUM_0557	-	hypothetical protein
500	 39.58	0	526550..526981	+	143	116617674	-	LEUM_0558	-	RNase H-like ribonuclease
501	 31.33	-1	527058..527357	+	99	116617675	-	LEUM_0559	-	hypothetical protein
502	 40.37	0	527562..529040	+	492	116617676	-	LEUM_0560	-	cytochrome bd-type quinol oxidase, subunit 1
503	 36.59	0	529037..530050	+	337	116617677	-	LEUM_0561	-	cytochrome bd-type quinol oxidase, subunit 2
504	 36.40	0	530162..531889	+	575	116617678	-	LEUM_0562	-	cytochrome bd biosynthesis ABC-type transporter, ATPase and permease component
505	 37.80	0	531886..533610	+	574	116617679	-	LEUM_0563	-	cytochrome bd biosynthesis ABC-type transporter, ATPase and permease component
506	 39.12	0	533610..534248	+	212	116617680	-	LEUM_0564	-	N-acetylmuramidase
507	 34.94	0	534272..534769	-	165	116617681	-	LEUM_0565	-	acetyltransferase
508	 39.68	0	534905..537205	+	766	116617682	-	LEUM_0566	-	ATP-dependent DNA helicase PcrA
509	 36.61	0	537202..537690	+	162	116617683	-	LEUM_0567	-	hypothetical protein
510	 40.53	0	537699..539741	+	680	116617684	-	LEUM_0568	-	NAD-dependent DNA ligase
511	 36.48	0	539741..540883	+	380	116617685	-	LEUM_0569	-	hypothetical protein
512	 36.08	0	540911..541603	-	230	116617686	-	LEUM_0570	-	hypothetical protein
513	 39.17	0	541682..543736	-	684	116617687	-	LEUM_0571	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
514	 37.93	0	543922..544095	+	57	116617688	-	LEUM_0572	-	hypothetical protein
515	 44.25	+1	544192..545199	+	335	116617689	-	LEUM_0573	-	Actin-like ATPase for cell morphogenesis
516	 38.34	0	545361..546218	+	285	116617690	-	LEUM_0574	-	rod shape-determining protein MreC
517	 35.42	0	546218..546745	+	175	116617691	-	LEUM_0575	-	rod shape-determining protein MreD
518	 36.76	0	547232..547873	+	213	116617692	-	LEUM_0576	-	ABC-type amino acid transport system, permease component
519	 37.25	0	547878..548516	+	212	116617693	-	LEUM_0577	-	ABC-type polar amino acid transport system, ATPase component
520	 35.09	0	548516..549370	+	284	116617694	-	LEUM_0578	-	amino acid ABC transporter periplasmic protein
521	 36.36	0	549453..550907	+	484	116617695	-	LEUM_0579	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
522	 38.94	0	550904..552169	+	421	116617696	-	LEUM_0580	-	Zn-dependent peptidase
523	 34.43	-1	552171..553442	+	423	116617697	-	LEUM_0581	-	Zn-dependent peptidase
524	 36.42	0	553457..554332	+	291	116617698	-	LEUM_0582	-	Xre-like DNA-binding protein
525	 36.43	0	554343..554924	+	193	116617699	-	LEUM_0583	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
526	 41.97	+1	555064..556221	+	385	116617700	-	LEUM_0584	-	RecA protein
527	 37.66	0	556304..556996	+	230	116617701	-	LEUM_0585	-	DNA-binding response regulator
528	 39.49	0	557237..558145	+	302	116617702	-	LEUM_0586	-	ABC-type phosphate transport system, periplasmic component
529	 31.42	-1	558310..558570	+	86	116617703	-	LEUM_0587	-	hypothetical protein
530	 38.43	0	558588..559568	+	326	116617704	-	LEUM_0588	-	Signal transduction histidine kinase
531	 41.95	+1	559710..560591	+	293	116617705	-	LEUM_0589	-	ABC-type phosphate transport system, periplasmic component
532	 39.72	0	560644..561567	+	307	116617706	-	LEUM_0590	-	ABC-type phosphate transport system, permease component
533	 38.53	0	561567..562451	+	294	116617707	-	LEUM_0591	-	ABC-type phosphate transport system, permease component
534	 38.67	0	562459..563301	+	280	116617708	-	LEUM_0592	-	ABC-type phosphate transport system, ATPase component
535	 39.69	0	563298..564068	+	256	116617709	-	LEUM_0593	-	ABC-type phosphate transport system, ATPase component
536	 39.41	0	564127..564801	+	224	116617710	-	LEUM_0594	-	phosphate uptake regulator, PhoU
537	 33.42	-1	564889..565989	-	366	116617711	-	LEUM_0595	-	di- and tricarboxylate transporter
538	 33.05	-1	566370..566726	+	118	116617712	-	LEUM_0596	-	hypothetical protein
539	 39.96	0	566728..567693	+	321	116617713	-	LEUM_0597	-	Serine kinase of the HPr protein, regulates carbohydrate metabolism
540	 43.52	+1	567686..568696	+	336	116617714	-	LEUM_0598	-	glycerol-3-phosphate dehydrogenase
541	 38.70	0	568719..569594	+	291	116617715	-	LEUM_0599	-	UDP-glucose pyrophosphorylase
542	 40.15	0	569708..570661	+	317	116617716	-	LEUM_0600	-	thioredoxin reductase
543	 38.54	0	570708..571091	-	127	116617717	-	LEUM_0601	-	methylmalonyl-CoA epimerase
544	 35.37	0	571142..571879	-	245	116617718	-	LEUM_0602	-	hypothetical protein
545	 42.18	+1	571882..572898	-	338	116617719	-	LEUM_0603	-	threonine dehydrogenase related Zn-dependent dehydrogenase
546	 37.22	0	573045..574022	+	325	116617720	-	LEUM_0604	-	LacI family transcription regulator
547	 35.15	0	574075..574734	+	219	116617721	-	LEUM_0605	-	hypothetical protein
548	 39.92	0	574777..576477	+	566	116617722	-	LEUM_0606	-	alpha-phosphoglucomutase
549	 43.61	+1	576601..576960	+	119	116617723	rplS	LEUM_0607	-	50S ribosomal protein L19
550	 38.38	0	577309..578022	-	237	116617724	-	LEUM_0608	-	hydrocarbon binding protein
551	 38.01	0	578071..578946	+	291	116617725	-	LEUM_0609	-	glutamate racemase
552	 37.95	0	578943..579548	+	201	116617726	-	LEUM_0610	-	xanthosine triphosphate pyrophosphatase
553	 38.92	0	579548..580084	+	178	116617727	-	LEUM_0611	-	phosphoesterase
554	 40.91	0	580220..581275	+	351	116617728	ruvB	LEUM_0612	-	Holliday junction DNA helicase B
555	 36.01	0	581272..582129	+	285	116617729	-	LEUM_0613	-	phosphoesterase or phosphohydrolase
556	 38.62	0	582167..583300	+	377	116617730	-	LEUM_0614	-	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)
557	 37.52	0	583503..584528	+	341	116617731	-	LEUM_0615	-	glycerophosphoryl diester phosphodiesterase
558	 40.27	0	584604..585194	+	196	116617732	-	LEUM_0616	-	Holliday junction resolvasome, DNA-binding subunit
559	 34.60	0	585435..586067	+	210	116617733	-	LEUM_0617	-	deoxynucleoside kinase
560	 33.85	-1	586101..586484	-	127	116617734	-	LEUM_0618	-	large-conductance mechanosensitive channel
561	 40.04	0	586656..588131	+	491	116617735	-	LEUM_0619	-	peptide ABC transporter permease
562	 37.41	0	588192..588854	+	220	116617736	-	LEUM_0620	-	peptide ABC transporter ATPase
563	 37.56	0	588960..589574	+	204	116617737	-	LEUM_0621	-	hypothetical protein
564	 41.46	+1	589787..590401	+	204	116617738	-	LEUM_0623	-	hypothetical protein
565	 39.73	0	590439..591095	-	218	116617739	-	LEUM_0624	-	hypothetical protein
566	 37.70	0	591382..593211	+	609	116617740	-	LEUM_0625	-	metallo-beta-lactamase superfamily hydrolase
567	 37.55	0	593317..594240	+	307	116617741	-	LEUM_0626	-	TPR repeat-containing protein
568	 43.35	+1	594404..595591	+	395	116617742	-	LEUM_0627	-	elongation factor Tu
569	 31.85	-1	595636..595770	-	44	116617743	-	LEUM_0628	-	hypothetical protein
570	 39.32	0	595908..596642	+	244	116617744	-	LEUM_0629	-	ABC-type polar amino acid transport system, ATPase component
571	 39.42	0	596652..597341	+	229	116617745	-	LEUM_0630	-	ribose-5-phosphate isomerase
572	 39.23	0	597416..597856	+	146	116617746	-	LEUM_0631	-	UspA family nucleotide-binding protein
573	 35.33	0	597894..598646	-	250	116617747	-	LEUM_0632	-	peptidyl-prolyl cis-trans isomerase
574	 39.27	0	598646..599167	-	173	116617748	-	LEUM_0633	-	SAM-dependent methyltransferase
575	 33.64	-1	599151..599804	-	217	116617749	-	LEUM_0634	-	membrane-associated phospholipid phosphatase
576	 39.27	0	600145..602571	+	808	116617750	leuS	LEUM_0635	-	leucyl-tRNA synthetase
577	 37.86	0	602667..604610	+	647	116617751	-	LEUM_0636	-	polysaccharide transporter
578	 35.81	0	604745..605593	+	282	116617752	-	LEUM_0637	-	hypothetical protein
579	 35.41	0	605595..606509	+	304	116617753	-	LEUM_0638	-	hypothetical protein
580	 38.80	0	606546..607094	+	182	116617754	-	LEUM_0639	-	hypothetical protein
581	 41.39	+1	607094..607987	+	297	116617755	-	LEUM_0640	-	heat shock protein HtpX
582	 39.47	0	608099..609076	+	325	116617756	-	LEUM_0641	-	hypothetical protein
583	 41.94	+1	609104..609289	+	61	116617757	-	LEUM_0642	-	4-oxalocrotonate tautomerase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.