IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
431	 36.78	0	446076..446714	+	212	116617605	-	LEUM_0487	-	thiamine monophosphate synthase
432	 40.51	0	446834..448240	+	468	116617606	-	LEUM_0488	-	NAD-dependent aldehyde dehydrogenase
433	 33.47	-1	448352..449092	+	246	116617607	-	LEUM_0489	-	hypothetical protein
434	 37.86	0	449142..450953	-	603	116617608	-	LEUM_0490	-	oligoendopeptidase F
435	 38.60	0	451111..452040	+	309	116617609	-	LEUM_0491	-	alpha/beta fold family hydrolase
436	 35.56	0	452099..452503	-	134	116617610	-	LEUM_0492	-	Fe2+/Zn2+ uptake regulation protein
437	 39.59	0	452626..453312	+	228	116617611	-	LEUM_0493	-	hypothetical protein
438	 40.06	0	453327..454010	+	227	116617612	-	LEUM_0494	-	hypothetical protein
439	 35.08	0	454088..454948	+	286	116617613	-	LEUM_0495	-	ribonuclease BN-like family protein
440	 35.19	0	454932..455525	+	197	116617614	-	LEUM_0496	-	hypothetical protein
441	 36.83	0	455569..457656	-	695	116617615	-	LEUM_0497	-	NhaP-type Na+/H+ and K+/H+ antiporter
442	 35.99	0	457702..458679	-	325	116617616	-	LEUM_0498	-	LacI family transcription regulator
443	 31.37	-1	458811..459065	+	84	116617617	-	LEUM_0499	-	hypothetical protein
444	 35.89	0	459076..459819	+	247	116617618	-	LEUM_0500	-	sugar phosphate isomerase/epimerase
445	 38.89	0	459835..461112	+	425	116617619	-	LEUM_0501	-	H+/gluconate symporter related permease
446	 39.67	0	461134..462096	+	320	116617620	-	LEUM_0502	-	2-dehydro-3-deoxygluconokinase
447	 40.53	0	462098..463042	+	314	116617621	-	LEUM_0503	-	lactate dehydrogenase related enzyme
448	 38.82	0	463124..465658	+	844	116617622	-	LEUM_0504	-	lysyl aminopeptidase
449	 38.58	0	465801..467573	+	590	116617623	-	LEUM_0505	-	oxidoreductase; Myosin-crossreactive antigen ortholog
450	 38.27	0	467646..469976	+	776	116617624	-	LEUM_0506	-	x-prolyl-dipeptidyl aminopeptidase
451	 42.39	+1	470118..470603	+	161	116617625	-	LEUM_0507	-	phosphotransferase system IIA component
452	 40.59	0	470606..472120	+	504	116617626	-	LEUM_0508	-	beta-glucoside-specific PTS system IIABC component
453	 38.12	0	472134..473783	+	549	116617627	-	LEUM_0509	-	alpha, alpha-phosphotrehalase
454	 39.28	0	473827..474549	-	240	116617628	-	LEUM_0510	-	GntR family transcriptional regulator
455	 39.57	0	474559..475905	-	448	116617629	-	LEUM_0511	-	HD superfamily phosphohydrolase
456	 33.78	-1	475967..476413	+	148	116617630	-	LEUM_0512	-	hypothetical protein
457	 37.93	0	476441..477028	+	195	116617631	-	LEUM_0513	-	DNA-directed RNA polymerase, delta subunit
458	 39.08	0	477783..479192	+	469	116617632	-	LEUM_0515	-	amino acid transporter
459	 37.75	0	479274..479816	+	180	116617633	-	LEUM_0516	-	hypothetical protein
460	 41.50	+1	479813..480118	+	101	116617634	-	LEUM_0517	-	Zn-finger protein
461	 39.06	0	480128..481105	+	325	116617635	-	LEUM_0518	-	biotin operon repressor
462	 38.85	0	481322..482935	+	537	116617636	-	LEUM_0519	-	CTP synthetase
463	 38.50	0	483053..484852	+	599	116617637	uvrC	LEUM_0520	-	excinuclease ABC subunit C
464	 42.95	+1	485018..486337	+	439	116617638	-	LEUM_0521	-	GTPase
465	 40.93	0	486520..488205	+	561	116617639	-	LEUM_0522	-	acetolactate synthase
466	 40.00	0	488720..489949	-	409	116617640	-	LEUM_0523	-	PepS aminopeptidase
467	 37.26	0	490094..490831	+	245	116617641	-	LEUM_0524	-	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
468	 38.91	0	490828..491832	+	334	116617642	-	LEUM_0525	-	dehydrogenase
469	 40.20	0	491834..493129	+	431	116617643	-	LEUM_0526	-	superfamily II DNA/RNA helicase
470	 39.45	0	493320..494153	+	277	116617644	-	LEUM_0527	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
471	 35.65	0	494155..494889	+	244	116617645	-	LEUM_0528	-	integral membrane protein
472	 37.04	0	494890..495510	+	206	116617646	-	LEUM_0529	-	dephospho-CoA kinase
473	 38.99	0	495497..496786	+	429	116617647	-	LEUM_0530	-	replicative DNA helicase loader DnaB
474	 35.13	0	496794..497741	+	315	116617648	-	LEUM_0531	-	replicative DNA helicase loader DnaI
475	 38.21	0	497738..498823	+	361	116617649	-	LEUM_0532	-	multitransmembrane protein
476	 35.14	0	498823..499599	+	258	116617650	-	LEUM_0533	-	multitransmembrane protein
477	 37.62	0	499640..499942	+	100	116617651	-	LEUM_0534	-	hypothetical protein
478	 40.13	0	500479..502509	+	676	116617652	-	LEUM_0536	-	ATP-dependent DNA helicase RecG
479	 40.33	0	502589..503617	+	342	116617653	-	LEUM_0537	-	phosphate:acyl-[acyl carrier protein] acyltransferase
480	 34.54	0	503685..503933	+	82	116617654	-	LEUM_0538	-	Acyl carrier protein
481	 33.55	-1	504119..504571	+	150	116617655	-	LEUM_0539	-	hypothetical protein
482	 37.41	0	504616..505449	+	277	116617656	-	LEUM_0540	-	HAD superfamily hydrolase
483	 38.16	0	505450..505656	+	68	116617657	-	LEUM_0541	-	hypothetical protein
484	 36.46	0	505649..506383	+	244	116617658	-	LEUM_0542	-	metal-dependent membrane protease
485	 41.53	+1	506424..507521	-	365	116617659	-	LEUM_0543	-	Mername-AA019 peptidase
486	 39.19	0	507722..508729	+	335	116617660	-	LEUM_0544	-	LacI family transcription regulator
487	 36.98	0	508838..510703	+	621	116617661	-	LEUM_0545	-	acyltransferase
488	 37.49	0	510817..512163	+	448	116617662	-	LEUM_0546	-	major facilitator superfamily permease
489	 35.21	0	512336..513292	+	318	116617663	-	LEUM_0547	-	Kef-type K+ transport systems, membrane component
490	 36.05	0	513401..514321	+	306	116617664	-	LEUM_0548	-	DMT family permease
491	 38.47	0	514401..515120	+	239	116617665	-	LEUM_0549	-	Alpha-acetolactate decarboxylase
492	 37.31	0	515191..516045	-	284	116617666	-	LEUM_0550	-	transcriptional regulator
493	 43.34	+1	516175..517083	+	302	116617667	-	LEUM_0551	-	6-phosphogluconate dehydrogenase-like protein
494	 41.26	+1	517191..518729	+	512	116617668	-	LEUM_0552	-	gluconate kinase
495	 40.04	0	518831..520201	+	456	116617669	-	LEUM_0553	-	H+/gluconate symporter related permease
496	 41.02	0	520425..521855	+	476	116617670	-	LEUM_0554	-	amino acid transporter
497	 39.78	0	521930..523264	+	444	116617671	-	LEUM_0555	-	4-aminobutyrate aminotransferase
498	 40.57	0	523521..526202	+	893	116617672	-	LEUM_0556	-	alanyl-tRNA synthetase
499	 33.73	-1	526299..526550	+	83	116617673	-	LEUM_0557	-	hypothetical protein
500	 39.58	0	526550..526981	+	143	116617674	-	LEUM_0558	-	RNase H-like ribonuclease
501	 31.33	-1	527058..527357	+	99	116617675	-	LEUM_0559	-	hypothetical protein
502	 40.37	0	527562..529040	+	492	116617676	-	LEUM_0560	-	cytochrome bd-type quinol oxidase, subunit 1
503	 36.59	0	529037..530050	+	337	116617677	-	LEUM_0561	-	cytochrome bd-type quinol oxidase, subunit 2
504	 36.40	0	530162..531889	+	575	116617678	-	LEUM_0562	-	cytochrome bd biosynthesis ABC-type transporter, ATPase and permease component
505	 37.80	0	531886..533610	+	574	116617679	-	LEUM_0563	-	cytochrome bd biosynthesis ABC-type transporter, ATPase and permease component
506	 39.12	0	533610..534248	+	212	116617680	-	LEUM_0564	-	N-acetylmuramidase
507	 34.94	0	534272..534769	-	165	116617681	-	LEUM_0565	-	acetyltransferase
508	 39.68	0	534905..537205	+	766	116617682	-	LEUM_0566	-	ATP-dependent DNA helicase PcrA
509	 36.61	0	537202..537690	+	162	116617683	-	LEUM_0567	-	hypothetical protein
510	 40.53	0	537699..539741	+	680	116617684	-	LEUM_0568	-	NAD-dependent DNA ligase
511	 36.48	0	539741..540883	+	380	116617685	-	LEUM_0569	-	hypothetical protein
512	 36.08	0	540911..541603	-	230	116617686	-	LEUM_0570	-	hypothetical protein
513	 39.17	0	541682..543736	-	684	116617687	-	LEUM_0571	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
514	 37.93	0	543922..544095	+	57	116617688	-	LEUM_0572	-	hypothetical protein
515	 44.25	+1	544192..545199	+	335	116617689	-	LEUM_0573	-	Actin-like ATPase for cell morphogenesis
516	 38.34	0	545361..546218	+	285	116617690	-	LEUM_0574	-	rod shape-determining protein MreC
517	 35.42	0	546218..546745	+	175	116617691	-	LEUM_0575	-	rod shape-determining protein MreD
518	 36.76	0	547232..547873	+	213	116617692	-	LEUM_0576	-	ABC-type amino acid transport system, permease component
519	 37.25	0	547878..548516	+	212	116617693	-	LEUM_0577	-	ABC-type polar amino acid transport system, ATPase component
520	 35.09	0	548516..549370	+	284	116617694	-	LEUM_0578	-	amino acid ABC transporter periplasmic protein
521	 36.36	0	549453..550907	+	484	116617695	-	LEUM_0579	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
522	 38.94	0	550904..552169	+	421	116617696	-	LEUM_0580	-	Zn-dependent peptidase
523	 34.43	-1	552171..553442	+	423	116617697	-	LEUM_0581	-	Zn-dependent peptidase
524	 36.42	0	553457..554332	+	291	116617698	-	LEUM_0582	-	Xre-like DNA-binding protein
525	 36.43	0	554343..554924	+	193	116617699	-	LEUM_0583	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
526	 41.97	+1	555064..556221	+	385	116617700	-	LEUM_0584	-	RecA protein
527	 37.66	0	556304..556996	+	230	116617701	-	LEUM_0585	-	DNA-binding response regulator
528	 39.49	0	557237..558145	+	302	116617702	-	LEUM_0586	-	ABC-type phosphate transport system, periplasmic component
529	 31.42	-1	558310..558570	+	86	116617703	-	LEUM_0587	-	hypothetical protein
530	 38.43	0	558588..559568	+	326	116617704	-	LEUM_0588	-	Signal transduction histidine kinase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.