IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
404	 40.66	0	422636..423481	+	281	116617578	-	LEUM_0460	-	methenyltetrahydrofolate cyclohydrolase
405	 37.37	0	423590..424531	+	313	116617579	-	LEUM_0461	-	Type II secretory pathway/competence component, ATPase
406	 36.00	0	424500..425510	+	336	116617580	-	LEUM_0462	-	Type II secretory pathway/competence component
407	 30.77	-2	425507..425818	+	103	116617581	-	LEUM_0463	-	competence protein ComGC
408	 36.82	0	425802..426203	+	133	116617582	-	LEUM_0464	-	Type II secretory pathway, pseudopilin PulG
409	 31.90	-1	426181..426390	+	69	116617583	-	LEUM_0465	-	hypothetical protein
410	 33.33	-1	426380..426793	+	137	116617584	-	LEUM_0466	-	competence protein ComGF
411	 31.94	-1	426786..427073	+	95	116617585	-	LEUM_0467	-	hypothetical protein
412	 37.47	0	427111..428100	+	329	116617586	-	LEUM_0468	-	adenine-specific DNA methylase
413	 39.92	0	428163..429422	+	419	116617587	-	LEUM_0469	-	acetate kinase
414	 35.79	0	429497..430798	+	433	116617588	-	LEUM_0470	-	aminodeoxychorismate lyase
415	 40.17	0	431182..432147	+	321	116617589	-	LEUM_0471	-	putative glucose uptake permease
416	 36.23	0	432229..432711	-	160	116617590	-	LEUM_0472	-	transcription elongation factor GreA
417	 37.24	0	432767..435376	-	869	116617591	-	LEUM_0473	-	hypothetical protein
418	 39.81	0	435465..436082	-	205	116617592	-	LEUM_0474	-	saccharopine dehydrogenase related protein
419	 39.24	0	436207..437358	+	383	116617593	-	LEUM_0475	-	ATPase
420	 38.60	0	437355..438512	+	385	116617594	-	LEUM_0476	-	hypothetical protein
421	 38.83	0	438509..438799	+	96	116617595	-	LEUM_0477	-	hypothetical protein
422	 37.87	0	438796..439302	+	168	116617596	-	LEUM_0478	-	hypothetical protein
423	 39.68	0	439418..439480	+	20	116617597	-	LEUM_0479	-	hypothetical protein
424	 38.52	0	439653..440828	+	391	116617598	-	LEUM_0480	-	ABC-type branched-chain amino acid transport systems, periplasmic component
425	 38.45	0	440886..441764	+	292	116617599	-	LEUM_0481	-	branched chain amino acid ABC transporter permease
426	 39.59	0	441764..442738	+	324	116617600	-	LEUM_0482	-	ABC transporter permease
427	 37.40	0	442710..443495	+	261	116617601	-	LEUM_0483	-	ABC-type branched-chain amino acid transport systems, ATPase component
428	 39.22	0	443492..444205	+	237	116617602	-	LEUM_0484	-	ABC-type branched-chain amino acid transport systems, ATPase component
429	 38.08	0	444478..445257	+	259	116617603	-	LEUM_0485	-	hydroxyethylthiazole kinase
430	 42.21	+1	445250..446083	+	277	116617604	-	LEUM_0486	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
431	 36.78	0	446076..446714	+	212	116617605	-	LEUM_0487	-	thiamine monophosphate synthase
432	 40.51	0	446834..448240	+	468	116617606	-	LEUM_0488	-	NAD-dependent aldehyde dehydrogenase
433	 33.47	-1	448352..449092	+	246	116617607	-	LEUM_0489	-	hypothetical protein
434	 37.86	0	449142..450953	-	603	116617608	-	LEUM_0490	-	oligoendopeptidase F
435	 38.60	0	451111..452040	+	309	116617609	-	LEUM_0491	-	alpha/beta fold family hydrolase
436	 35.56	0	452099..452503	-	134	116617610	-	LEUM_0492	-	Fe2+/Zn2+ uptake regulation protein
437	 39.59	0	452626..453312	+	228	116617611	-	LEUM_0493	-	hypothetical protein
438	 40.06	0	453327..454010	+	227	116617612	-	LEUM_0494	-	hypothetical protein
439	 35.08	0	454088..454948	+	286	116617613	-	LEUM_0495	-	ribonuclease BN-like family protein
440	 35.19	0	454932..455525	+	197	116617614	-	LEUM_0496	-	hypothetical protein
441	 36.83	0	455569..457656	-	695	116617615	-	LEUM_0497	-	NhaP-type Na+/H+ and K+/H+ antiporter
442	 35.99	0	457702..458679	-	325	116617616	-	LEUM_0498	-	LacI family transcription regulator
443	 31.37	-1	458811..459065	+	84	116617617	-	LEUM_0499	-	hypothetical protein
444	 35.89	0	459076..459819	+	247	116617618	-	LEUM_0500	-	sugar phosphate isomerase/epimerase
445	 38.89	0	459835..461112	+	425	116617619	-	LEUM_0501	-	H+/gluconate symporter related permease
446	 39.67	0	461134..462096	+	320	116617620	-	LEUM_0502	-	2-dehydro-3-deoxygluconokinase
447	 40.53	0	462098..463042	+	314	116617621	-	LEUM_0503	-	lactate dehydrogenase related enzyme
448	 38.82	0	463124..465658	+	844	116617622	-	LEUM_0504	-	lysyl aminopeptidase
449	 38.58	0	465801..467573	+	590	116617623	-	LEUM_0505	-	oxidoreductase; Myosin-crossreactive antigen ortholog
450	 38.27	0	467646..469976	+	776	116617624	-	LEUM_0506	-	x-prolyl-dipeptidyl aminopeptidase
451	 42.39	+1	470118..470603	+	161	116617625	-	LEUM_0507	-	phosphotransferase system IIA component
452	 40.59	0	470606..472120	+	504	116617626	-	LEUM_0508	-	beta-glucoside-specific PTS system IIABC component
453	 38.12	0	472134..473783	+	549	116617627	-	LEUM_0509	-	alpha, alpha-phosphotrehalase
454	 39.28	0	473827..474549	-	240	116617628	-	LEUM_0510	-	GntR family transcriptional regulator
455	 39.57	0	474559..475905	-	448	116617629	-	LEUM_0511	-	HD superfamily phosphohydrolase
456	 33.78	-1	475967..476413	+	148	116617630	-	LEUM_0512	-	hypothetical protein
457	 37.93	0	476441..477028	+	195	116617631	-	LEUM_0513	-	DNA-directed RNA polymerase, delta subunit
458	 39.08	0	477783..479192	+	469	116617632	-	LEUM_0515	-	amino acid transporter
459	 37.75	0	479274..479816	+	180	116617633	-	LEUM_0516	-	hypothetical protein
460	 41.50	+1	479813..480118	+	101	116617634	-	LEUM_0517	-	Zn-finger protein
461	 39.06	0	480128..481105	+	325	116617635	-	LEUM_0518	-	biotin operon repressor
462	 38.85	0	481322..482935	+	537	116617636	-	LEUM_0519	-	CTP synthetase
463	 38.50	0	483053..484852	+	599	116617637	uvrC	LEUM_0520	-	excinuclease ABC subunit C
464	 42.95	+1	485018..486337	+	439	116617638	-	LEUM_0521	-	GTPase
465	 40.93	0	486520..488205	+	561	116617639	-	LEUM_0522	-	acetolactate synthase
466	 40.00	0	488720..489949	-	409	116617640	-	LEUM_0523	-	PepS aminopeptidase
467	 37.26	0	490094..490831	+	245	116617641	-	LEUM_0524	-	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
468	 38.91	0	490828..491832	+	334	116617642	-	LEUM_0525	-	dehydrogenase
469	 40.20	0	491834..493129	+	431	116617643	-	LEUM_0526	-	superfamily II DNA/RNA helicase
470	 39.45	0	493320..494153	+	277	116617644	-	LEUM_0527	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
471	 35.65	0	494155..494889	+	244	116617645	-	LEUM_0528	-	integral membrane protein
472	 37.04	0	494890..495510	+	206	116617646	-	LEUM_0529	-	dephospho-CoA kinase
473	 38.99	0	495497..496786	+	429	116617647	-	LEUM_0530	-	replicative DNA helicase loader DnaB
474	 35.13	0	496794..497741	+	315	116617648	-	LEUM_0531	-	replicative DNA helicase loader DnaI
475	 38.21	0	497738..498823	+	361	116617649	-	LEUM_0532	-	multitransmembrane protein
476	 35.14	0	498823..499599	+	258	116617650	-	LEUM_0533	-	multitransmembrane protein
477	 37.62	0	499640..499942	+	100	116617651	-	LEUM_0534	-	hypothetical protein
478	 40.13	0	500479..502509	+	676	116617652	-	LEUM_0536	-	ATP-dependent DNA helicase RecG
479	 40.33	0	502589..503617	+	342	116617653	-	LEUM_0537	-	phosphate:acyl-[acyl carrier protein] acyltransferase
480	 34.54	0	503685..503933	+	82	116617654	-	LEUM_0538	-	Acyl carrier protein
481	 33.55	-1	504119..504571	+	150	116617655	-	LEUM_0539	-	hypothetical protein
482	 37.41	0	504616..505449	+	277	116617656	-	LEUM_0540	-	HAD superfamily hydrolase
483	 38.16	0	505450..505656	+	68	116617657	-	LEUM_0541	-	hypothetical protein
484	 36.46	0	505649..506383	+	244	116617658	-	LEUM_0542	-	metal-dependent membrane protease
485	 41.53	+1	506424..507521	-	365	116617659	-	LEUM_0543	-	Mername-AA019 peptidase
486	 39.19	0	507722..508729	+	335	116617660	-	LEUM_0544	-	LacI family transcription regulator
487	 36.98	0	508838..510703	+	621	116617661	-	LEUM_0545	-	acyltransferase
488	 37.49	0	510817..512163	+	448	116617662	-	LEUM_0546	-	major facilitator superfamily permease
489	 35.21	0	512336..513292	+	318	116617663	-	LEUM_0547	-	Kef-type K+ transport systems, membrane component
490	 36.05	0	513401..514321	+	306	116617664	-	LEUM_0548	-	DMT family permease
491	 38.47	0	514401..515120	+	239	116617665	-	LEUM_0549	-	Alpha-acetolactate decarboxylase
492	 37.31	0	515191..516045	-	284	116617666	-	LEUM_0550	-	transcriptional regulator
493	 43.34	+1	516175..517083	+	302	116617667	-	LEUM_0551	-	6-phosphogluconate dehydrogenase-like protein
494	 41.26	+1	517191..518729	+	512	116617668	-	LEUM_0552	-	gluconate kinase
495	 40.04	0	518831..520201	+	456	116617669	-	LEUM_0553	-	H+/gluconate symporter related permease
496	 41.02	0	520425..521855	+	476	116617670	-	LEUM_0554	-	amino acid transporter
497	 39.78	0	521930..523264	+	444	116617671	-	LEUM_0555	-	4-aminobutyrate aminotransferase
498	 40.57	0	523521..526202	+	893	116617672	-	LEUM_0556	-	alanyl-tRNA synthetase
499	 33.73	-1	526299..526550	+	83	116617673	-	LEUM_0557	-	hypothetical protein
500	 39.58	0	526550..526981	+	143	116617674	-	LEUM_0558	-	RNase H-like ribonuclease
501	 31.33	-1	527058..527357	+	99	116617675	-	LEUM_0559	-	hypothetical protein
502	 40.37	0	527562..529040	+	492	116617676	-	LEUM_0560	-	cytochrome bd-type quinol oxidase, subunit 1
503	 36.59	0	529037..530050	+	337	116617677	-	LEUM_0561	-	cytochrome bd-type quinol oxidase, subunit 2
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.