IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
362	 32.65	-1	373316..374044	+	242	116617536	-	LEUM_0416	-	hypothetical protein
363	 31.62	-1	374022..374489	+	155	116617537	-	LEUM_0417	-	response regulator
364	 32.36	-1	374476..374886	+	136	116617538	-	LEUM_0418	-	hypothetical protein
365	 40.08	0	375020..377110	+	696	116617539	-	LEUM_0419	-	DNA topoisomerase I, TopA
366	 36.78	0	377143..378969	-	608	116617540	-	LEUM_0420	-	major facilitator superfamily permease
367	 34.61	0	379192..379740	+	182	116617541	-	LEUM_0421	-	TetR family transcriptional regulator
368	 41.44	+1	379852..380973	+	373	116617542	-	LEUM_0422	-	alanine racemase
369	 41.14	0	381189..381713	+	174	116617543	-	LEUM_0424	-	phosphatidylglycerophosphatase A related protein
370	 39.07	0	381824..382990	+	388	116617544	-	LEUM_0425	-	N-acetylglucosamine 6-phosphate deacetylase
371	 42.35	+1	382995..383693	+	232	116617545	-	LEUM_0426	-	GntR family transcriptional regulator
372	 40.80	0	383727..384422	-	231	116617546	-	LEUM_0427	-	ABC-type metal ion transport system, permease component
373	 38.15	0	384425..385504	-	359	116617547	-	LEUM_0428	-	ABC-type metal ion transport system, ATPase component
374	 39.39	0	385501..386838	-	445	116617548	-	LEUM_0429	-	acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase
375	 38.08	0	386884..387726	-	280	116617549	-	LEUM_0430	-	ABC-type metal ion transport system, periplasmic component/surface antigen
376	 36.64	0	387754..388599	-	281	116617550	-	LEUM_0431	-	ABC-type metal ion transport system, periplasmic component/surface antigen
377	 36.82	0	389047..389706	-	219	116617551	-	LEUM_0432	-	hypothetical protein
378	 37.08	0	389803..391644	+	613	116617552	-	LEUM_0433	-	hypothetical protein
379	 40.92	0	391916..394579	+	887	116617553	-	LEUM_0434	-	cation transport ATPase
380	 38.48	0	394586..395032	+	148	116617554	-	LEUM_0435	-	hypothetical protein
381	 37.90	0	395103..396044	-	313	116617555	-	LEUM_0436	-	hypothetical protein
382	 42.05	+1	396254..397309	+	351	116617556	-	LEUM_0437	-	ABC transporter periplasmic protein
383	 39.29	0	397567..399009	+	480	116617557	-	LEUM_0438	-	ABC-type amino acid transport system, permease and periplasmic component
384	 37.32	0	399006..399758	+	250	116617558	-	LEUM_0439	-	ABC-type polar amino acid transport system, ATPase component
385	 37.62	0	399825..401270	+	481	116617559	-	LEUM_0440	-	ABC-type amino acid transport system, permease and periplasmic component
386	 37.40	0	402393..404186	+	597	116617560	-	LEUM_0442	-	oligopeptidase F
387	 40.51	0	404297..404686	+	129	116617561	-	LEUM_0443	-	cytidine deaminase
388	 38.32	0	404703..405143	+	146	116617562	-	LEUM_0444	-	purine deoxyribosyltransferase
389	 42.37	+1	405143..406072	+	309	116617563	-	LEUM_0445	-	lactate dehydrogenase related enzyme
390	 37.13	0	406092..406460	+	122	116617564	-	LEUM_0446	-	transcriptional regulator
391	 38.63	0	406737..407813	+	358	116617565	-	LEUM_0447	-	phenylalanyl-tRNA synthetase, alpha subunit
392	 38.01	0	407816..410272	+	818	116617566	-	LEUM_0448	-	phenylalanyl-tRNA synthetase beta subunit
393	 41.65	+1	410353..411639	+	428	116617567	-	LEUM_0449	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
394	 38.95	0	411732..411998	+	88	116617568	-	LEUM_0450	-	50S ribosomal protein L31P
395	 38.22	0	412038..413429	+	463	116617569	-	LEUM_0451	-	tRNA (uracil-5-)-methyltransferase related enzyme
396	 38.00	0	413431..414759	+	442	116617570	-	LEUM_0452	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
397	 35.96	0	414783..415925	+	380	116617571	-	LEUM_0453	-	Beta-lactamase class C related penicillin binding protein
398	 42.41	+1	415961..417547	+	528	116617572	-	LEUM_0454	-	superfamily II DNA/RNA helicase
399	 38.16	0	417692..418873	+	393	116617573	-	LEUM_0455	-	folylpolyglutamate synthase
400	 38.16	0	418863..420251	+	462	116617574	-	LEUM_0456	-	major facilitator superfamily permease
401	 35.14	0	420287..420895	+	202	116617575	-	LEUM_0457	-	DNA repair protein
402	 38.60	0	420919..421887	-	322	116617576	thyA	LEUM_0458	-	thymidylate synthase
403	 39.83	0	422088..422564	-	158	116617577	-	LEUM_0459	-	deoxycytidylate deaminase
404	 40.66	0	422636..423481	+	281	116617578	-	LEUM_0460	-	methenyltetrahydrofolate cyclohydrolase
405	 37.37	0	423590..424531	+	313	116617579	-	LEUM_0461	-	Type II secretory pathway/competence component, ATPase
406	 36.00	0	424500..425510	+	336	116617580	-	LEUM_0462	-	Type II secretory pathway/competence component
407	 30.77	-2	425507..425818	+	103	116617581	-	LEUM_0463	-	competence protein ComGC
408	 36.82	0	425802..426203	+	133	116617582	-	LEUM_0464	-	Type II secretory pathway, pseudopilin PulG
409	 31.90	-1	426181..426390	+	69	116617583	-	LEUM_0465	-	hypothetical protein
410	 33.33	-1	426380..426793	+	137	116617584	-	LEUM_0466	-	competence protein ComGF
411	 31.94	-1	426786..427073	+	95	116617585	-	LEUM_0467	-	hypothetical protein
412	 37.47	0	427111..428100	+	329	116617586	-	LEUM_0468	-	adenine-specific DNA methylase
413	 39.92	0	428163..429422	+	419	116617587	-	LEUM_0469	-	acetate kinase
414	 35.79	0	429497..430798	+	433	116617588	-	LEUM_0470	-	aminodeoxychorismate lyase
415	 40.17	0	431182..432147	+	321	116617589	-	LEUM_0471	-	putative glucose uptake permease
416	 36.23	0	432229..432711	-	160	116617590	-	LEUM_0472	-	transcription elongation factor GreA
417	 37.24	0	432767..435376	-	869	116617591	-	LEUM_0473	-	hypothetical protein
418	 39.81	0	435465..436082	-	205	116617592	-	LEUM_0474	-	saccharopine dehydrogenase related protein
419	 39.24	0	436207..437358	+	383	116617593	-	LEUM_0475	-	ATPase
420	 38.60	0	437355..438512	+	385	116617594	-	LEUM_0476	-	hypothetical protein
421	 38.83	0	438509..438799	+	96	116617595	-	LEUM_0477	-	hypothetical protein
422	 37.87	0	438796..439302	+	168	116617596	-	LEUM_0478	-	hypothetical protein
423	 39.68	0	439418..439480	+	20	116617597	-	LEUM_0479	-	hypothetical protein
424	 38.52	0	439653..440828	+	391	116617598	-	LEUM_0480	-	ABC-type branched-chain amino acid transport systems, periplasmic component
425	 38.45	0	440886..441764	+	292	116617599	-	LEUM_0481	-	branched chain amino acid ABC transporter permease
426	 39.59	0	441764..442738	+	324	116617600	-	LEUM_0482	-	ABC transporter permease
427	 37.40	0	442710..443495	+	261	116617601	-	LEUM_0483	-	ABC-type branched-chain amino acid transport systems, ATPase component
428	 39.22	0	443492..444205	+	237	116617602	-	LEUM_0484	-	ABC-type branched-chain amino acid transport systems, ATPase component
429	 38.08	0	444478..445257	+	259	116617603	-	LEUM_0485	-	hydroxyethylthiazole kinase
430	 42.21	+1	445250..446083	+	277	116617604	-	LEUM_0486	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
431	 36.78	0	446076..446714	+	212	116617605	-	LEUM_0487	-	thiamine monophosphate synthase
432	 40.51	0	446834..448240	+	468	116617606	-	LEUM_0488	-	NAD-dependent aldehyde dehydrogenase
433	 33.47	-1	448352..449092	+	246	116617607	-	LEUM_0489	-	hypothetical protein
434	 37.86	0	449142..450953	-	603	116617608	-	LEUM_0490	-	oligoendopeptidase F
435	 38.60	0	451111..452040	+	309	116617609	-	LEUM_0491	-	alpha/beta fold family hydrolase
436	 35.56	0	452099..452503	-	134	116617610	-	LEUM_0492	-	Fe2+/Zn2+ uptake regulation protein
437	 39.59	0	452626..453312	+	228	116617611	-	LEUM_0493	-	hypothetical protein
438	 40.06	0	453327..454010	+	227	116617612	-	LEUM_0494	-	hypothetical protein
439	 35.08	0	454088..454948	+	286	116617613	-	LEUM_0495	-	ribonuclease BN-like family protein
440	 35.19	0	454932..455525	+	197	116617614	-	LEUM_0496	-	hypothetical protein
441	 36.83	0	455569..457656	-	695	116617615	-	LEUM_0497	-	NhaP-type Na+/H+ and K+/H+ antiporter
442	 35.99	0	457702..458679	-	325	116617616	-	LEUM_0498	-	LacI family transcription regulator
443	 31.37	-1	458811..459065	+	84	116617617	-	LEUM_0499	-	hypothetical protein
444	 35.89	0	459076..459819	+	247	116617618	-	LEUM_0500	-	sugar phosphate isomerase/epimerase
445	 38.89	0	459835..461112	+	425	116617619	-	LEUM_0501	-	H+/gluconate symporter related permease
446	 39.67	0	461134..462096	+	320	116617620	-	LEUM_0502	-	2-dehydro-3-deoxygluconokinase
447	 40.53	0	462098..463042	+	314	116617621	-	LEUM_0503	-	lactate dehydrogenase related enzyme
448	 38.82	0	463124..465658	+	844	116617622	-	LEUM_0504	-	lysyl aminopeptidase
449	 38.58	0	465801..467573	+	590	116617623	-	LEUM_0505	-	oxidoreductase; Myosin-crossreactive antigen ortholog
450	 38.27	0	467646..469976	+	776	116617624	-	LEUM_0506	-	x-prolyl-dipeptidyl aminopeptidase
451	 42.39	+1	470118..470603	+	161	116617625	-	LEUM_0507	-	phosphotransferase system IIA component
452	 40.59	0	470606..472120	+	504	116617626	-	LEUM_0508	-	beta-glucoside-specific PTS system IIABC component
453	 38.12	0	472134..473783	+	549	116617627	-	LEUM_0509	-	alpha, alpha-phosphotrehalase
454	 39.28	0	473827..474549	-	240	116617628	-	LEUM_0510	-	GntR family transcriptional regulator
455	 39.57	0	474559..475905	-	448	116617629	-	LEUM_0511	-	HD superfamily phosphohydrolase
456	 33.78	-1	475967..476413	+	148	116617630	-	LEUM_0512	-	hypothetical protein
457	 37.93	0	476441..477028	+	195	116617631	-	LEUM_0513	-	DNA-directed RNA polymerase, delta subunit
458	 39.08	0	477783..479192	+	469	116617632	-	LEUM_0515	-	amino acid transporter
459	 37.75	0	479274..479816	+	180	116617633	-	LEUM_0516	-	hypothetical protein
460	 41.50	+1	479813..480118	+	101	116617634	-	LEUM_0517	-	Zn-finger protein
461	 39.06	0	480128..481105	+	325	116617635	-	LEUM_0518	-	biotin operon repressor
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.