IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
313	 33.12	-1	317296..317763	-	155	116617487	-	LEUM_0362	-	hypothetical protein
314	 36.23	0	317756..317962	-	68	116617488	-	LEUM_0363	-	transcriptional regulator
315	 38.43	0	318106..318321	+	71	116617489	-	LEUM_0364	-	hypothetical protein
316	 29.41	-2	318663..318968	+	101	116617490	-	LEUM_0366	-	hypothetical protein
317	 34.73	0	319399..319899	-	166	116617491	-	LEUM_0367	-	amidase
318	 37.75	0	320524..321270	+	248	116617492	-	LEUM_0368	-	ABC-type amino acid transport system, permease component
319	 37.56	0	321321..322148	+	275	116617493	-	LEUM_0369	-	ABC-type amino acid transport system, periplasmic component
320	 38.01	0	322161..322865	+	234	116617494	-	LEUM_0370	-	ABC-type amino acid transport system, permease component
321	 41.60	+1	322868..323605	+	245	116617495	-	LEUM_0371	-	ABC-type polar amino acid transport system, ATPase component
322	 37.54	0	323638..324873	+	411	116617496	-	LEUM_0372	-	2-aminoadipate aminotransferase / aromatic amino acid aminotransferase
323	 36.01	0	324885..325856	+	323	116617497	-	LEUM_0373	-	lactate dehydrogenase related 2-hydroxyacid dehydrogenase
324	 39.02	0	325867..326640	+	257	116617498	-	LEUM_0374	-	ABC-type polar amino acid transport system, ATPase component
325	 37.86	0	326637..327872	+	411	116617499	-	LEUM_0375	-	major facilitator superfamily permease
326	 40.38	0	328023..329243	+	406	116617500	-	LEUM_0376	-	queuine/archaeosine tRNA-ribosyltransferase
327	 36.64	0	329335..329697	+	120	116617501	-	LEUM_0377	-	protein translocase subunit yajC
328	 37.55	0	329755..330489	+	244	116617502	-	LEUM_0378	-	alpha/beta fold family hydrolase
329	 36.41	0	330476..333010	+	844	116617503	-	LEUM_0379	-	lysyl-tRNA synthetase (class II)
330	 36.09	0	333068..333721	+	217	116617504	-	LEUM_0380	-	HD superfamily hydrolase
331	 41.21	+1	333723..334217	+	164	116617505	-	LEUM_0381	-	ADP-ribose pyrophosphatase
332	 41.40	+1	334214..334870	+	218	116617506	-	LEUM_0382	-	phosphoglycerate mutase family protein
333	 38.79	0	335069..336259	+	396	116617507	-	LEUM_0383	-	major facilitator superfamily permease
334	 38.27	0	336262..337740	+	492	116617508	-	LEUM_0384	-	glycosidase
335	 37.70	0	337936..339654	+	572	116617509	-	LEUM_0385	-	ABC-type multidrug transport system, ATPase and permease component
336	 36.98	0	339654..341435	+	593	116617510	-	LEUM_0386	-	ABC-type multidrug transport system, ATPase and permease component
337	 38.88	0	341614..342840	+	408	116617511	-	LEUM_0387	-	1,2-diacylglycerol 3-glucosyltransferase
338	 34.82	0	342841..343848	+	335	116617512	-	LEUM_0388	-	glycosyltransferase
339	 39.60	0	343858..344895	+	345	116617513	-	LEUM_0389	-	integral membrane protein
340	 34.47	-1	344888..345151	+	87	116617514	-	LEUM_0390	-	hypothetical protein
341	 36.03	0	345266..347341	+	691	116617515	-	LEUM_0391	-	phosphoglycerol transferase/alkaline phosphatase superfamily protein
342	 38.61	0	347458..349467	+	669	116617516	-	LEUM_0392	-	excinuclease ABC subunit B
343	 40.36	0	349499..352357	+	952	116617517	-	LEUM_0393	-	excinuclease ABC subunit A
344	 40.04	0	352455..353423	+	322	116617518	-	LEUM_0394	-	hypothetical protein
345	 37.67	0	353424..354368	+	314	116617519	-	LEUM_0395	-	hypothetical protein
346	 40.30	0	354456..355058	+	200	116617520	-	LEUM_0396	-	ATP-dependent Clp protease proteolytic subunit ClpP
347	 35.35	0	355130..355774	-	214	116617521	-	LEUM_0397	-	CBS domain-containing protein
348	 40.56	0	355900..356466	+	188	116617522	-	LEUM_0398	-	peptidyl-tRNA hydrolase
349	 38.84	0	356467..360006	+	1179	116617523	-	LEUM_0399	-	transcription-repair coupling factor
350	 35.11	0	360022..360303	+	93	116617524	-	LEUM_0400	-	ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein
351	 37.34	0	360385..360783	+	132	116617525	-	LEUM_0401	-	septum formation initiator
352	 38.13	0	360814..362106	+	430	116617526	-	LEUM_0402	-	tRNA(Ile)-lysidine synthetase, MesJ
353	 37.78	0	362107..362646	+	179	116617527	-	LEUM_0403	-	hypoxanthine phosphoribosyltransferase
354	 41.32	+1	362674..364776	+	700	116617528	-	LEUM_0404	-	ATP-dependent Zn protease
355	 41.83	+1	364885..365778	+	297	116617529	-	LEUM_0405	-	disulfide bond chaperones of the HSP33 family
356	 39.78	0	365865..367352	+	495	116617530	-	LEUM_0406	-	lysyl-tRNA synthetase (class II)
357	 40.07	0	367822..368355	+	177	116617531	-	LEUM_0410	-	ribosomal large subunit pseudouridine synthase E
358	 41.42	+1	368426..369142	+	238	116617532	-	LEUM_0411	-	hypothetical protein
359	 40.40	0	369191..370138	-	315	116617533	-	LEUM_0412	-	ferrochelatase
360	 39.68	0	370951..372399	+	482	116617534	-	LEUM_0414	-	xanthine/uracil/vitamin C permease
361	 36.70	0	372519..373319	+	266	116617535	-	LEUM_0415	-	ABC-type multidrug transport system, ATPase component
362	 32.65	-1	373316..374044	+	242	116617536	-	LEUM_0416	-	hypothetical protein
363	 31.62	-1	374022..374489	+	155	116617537	-	LEUM_0417	-	response regulator
364	 32.36	-1	374476..374886	+	136	116617538	-	LEUM_0418	-	hypothetical protein
365	 40.08	0	375020..377110	+	696	116617539	-	LEUM_0419	-	DNA topoisomerase I, TopA
366	 36.78	0	377143..378969	-	608	116617540	-	LEUM_0420	-	major facilitator superfamily permease
367	 34.61	0	379192..379740	+	182	116617541	-	LEUM_0421	-	TetR family transcriptional regulator
368	 41.44	+1	379852..380973	+	373	116617542	-	LEUM_0422	-	alanine racemase
369	 41.14	0	381189..381713	+	174	116617543	-	LEUM_0424	-	phosphatidylglycerophosphatase A related protein
370	 39.07	0	381824..382990	+	388	116617544	-	LEUM_0425	-	N-acetylglucosamine 6-phosphate deacetylase
371	 42.35	+1	382995..383693	+	232	116617545	-	LEUM_0426	-	GntR family transcriptional regulator
372	 40.80	0	383727..384422	-	231	116617546	-	LEUM_0427	-	ABC-type metal ion transport system, permease component
373	 38.15	0	384425..385504	-	359	116617547	-	LEUM_0428	-	ABC-type metal ion transport system, ATPase component
374	 39.39	0	385501..386838	-	445	116617548	-	LEUM_0429	-	acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase
375	 38.08	0	386884..387726	-	280	116617549	-	LEUM_0430	-	ABC-type metal ion transport system, periplasmic component/surface antigen
376	 36.64	0	387754..388599	-	281	116617550	-	LEUM_0431	-	ABC-type metal ion transport system, periplasmic component/surface antigen
377	 36.82	0	389047..389706	-	219	116617551	-	LEUM_0432	-	hypothetical protein
378	 37.08	0	389803..391644	+	613	116617552	-	LEUM_0433	-	hypothetical protein
379	 40.92	0	391916..394579	+	887	116617553	-	LEUM_0434	-	cation transport ATPase
380	 38.48	0	394586..395032	+	148	116617554	-	LEUM_0435	-	hypothetical protein
381	 37.90	0	395103..396044	-	313	116617555	-	LEUM_0436	-	hypothetical protein
382	 42.05	+1	396254..397309	+	351	116617556	-	LEUM_0437	-	ABC transporter periplasmic protein
383	 39.29	0	397567..399009	+	480	116617557	-	LEUM_0438	-	ABC-type amino acid transport system, permease and periplasmic component
384	 37.32	0	399006..399758	+	250	116617558	-	LEUM_0439	-	ABC-type polar amino acid transport system, ATPase component
385	 37.62	0	399825..401270	+	481	116617559	-	LEUM_0440	-	ABC-type amino acid transport system, permease and periplasmic component
386	 37.40	0	402393..404186	+	597	116617560	-	LEUM_0442	-	oligopeptidase F
387	 40.51	0	404297..404686	+	129	116617561	-	LEUM_0443	-	cytidine deaminase
388	 38.32	0	404703..405143	+	146	116617562	-	LEUM_0444	-	purine deoxyribosyltransferase
389	 42.37	+1	405143..406072	+	309	116617563	-	LEUM_0445	-	lactate dehydrogenase related enzyme
390	 37.13	0	406092..406460	+	122	116617564	-	LEUM_0446	-	transcriptional regulator
391	 38.63	0	406737..407813	+	358	116617565	-	LEUM_0447	-	phenylalanyl-tRNA synthetase, alpha subunit
392	 38.01	0	407816..410272	+	818	116617566	-	LEUM_0448	-	phenylalanyl-tRNA synthetase beta subunit
393	 41.65	+1	410353..411639	+	428	116617567	-	LEUM_0449	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
394	 38.95	0	411732..411998	+	88	116617568	-	LEUM_0450	-	50S ribosomal protein L31P
395	 38.22	0	412038..413429	+	463	116617569	-	LEUM_0451	-	tRNA (uracil-5-)-methyltransferase related enzyme
396	 38.00	0	413431..414759	+	442	116617570	-	LEUM_0452	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
397	 35.96	0	414783..415925	+	380	116617571	-	LEUM_0453	-	Beta-lactamase class C related penicillin binding protein
398	 42.41	+1	415961..417547	+	528	116617572	-	LEUM_0454	-	superfamily II DNA/RNA helicase
399	 38.16	0	417692..418873	+	393	116617573	-	LEUM_0455	-	folylpolyglutamate synthase
400	 38.16	0	418863..420251	+	462	116617574	-	LEUM_0456	-	major facilitator superfamily permease
401	 35.14	0	420287..420895	+	202	116617575	-	LEUM_0457	-	DNA repair protein
402	 38.60	0	420919..421887	-	322	116617576	thyA	LEUM_0458	-	thymidylate synthase
403	 39.83	0	422088..422564	-	158	116617577	-	LEUM_0459	-	deoxycytidylate deaminase
404	 40.66	0	422636..423481	+	281	116617578	-	LEUM_0460	-	methenyltetrahydrofolate cyclohydrolase
405	 37.37	0	423590..424531	+	313	116617579	-	LEUM_0461	-	Type II secretory pathway/competence component, ATPase
406	 36.00	0	424500..425510	+	336	116617580	-	LEUM_0462	-	Type II secretory pathway/competence component
407	 30.77	-2	425507..425818	+	103	116617581	-	LEUM_0463	-	competence protein ComGC
408	 36.82	0	425802..426203	+	133	116617582	-	LEUM_0464	-	Type II secretory pathway, pseudopilin PulG
409	 31.90	-1	426181..426390	+	69	116617583	-	LEUM_0465	-	hypothetical protein
410	 33.33	-1	426380..426793	+	137	116617584	-	LEUM_0466	-	competence protein ComGF
411	 31.94	-1	426786..427073	+	95	116617585	-	LEUM_0467	-	hypothetical protein
412	 37.47	0	427111..428100	+	329	116617586	-	LEUM_0468	-	adenine-specific DNA methylase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.