IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
254	 38.64	0	255378..257486	+	702	116617428	-	LEUM_0300	-	methionyl-tRNA synthetase
255	 40.45	0	257595..258578	+	327	116617429	-	LEUM_0301	-	biotin operon repressor
256	 34.04	-1	258617..259186	-	189	116617430	-	LEUM_0302	-	hypothetical protein
257	 36.87	0	259775..260452	+	225	116617431	-	LEUM_0304	-	dethiobiotin synthase
258	 43.04	+1	260650..261669	+	339	116617432	-	LEUM_0305	-	glyceraldehyde-3-phosphate dehydrogenase
259	 35.06	0	261873..262682	+	269	116617433	-	LEUM_0306	-	phosphohydrolase
260	 36.36	0	262738..263265	+	175	116617434	-	LEUM_0307	-	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase
261	 37.25	0	263258..263716	+	152	116617435	-	LEUM_0308	-	MarR family transcriptional regulator
262	 42.28	+1	263728..264699	+	323	116617436	-	LEUM_0309	-	3-oxoacyl-[acyl-carrier-protein] synthase III
263	 31.67	-1	264775..265014	+	79	116617437	-	LEUM_0310	-	Acyl carrier protein
264	 41.93	+1	265065..266030	+	321	116617438	-	LEUM_0311	-	dioxygenase
265	 41.21	+1	266088..267026	+	312	116617439	-	LEUM_0312	-	[Acyl-carrier-protein] S-malonyltransferase
266	 38.11	0	267028..267759	+	243	116617440	-	LEUM_0313	-	3-oxoacyl-[acyl-carrier-protein] reductase
267	 42.36	+1	267882..269144	+	420	116617441	-	LEUM_0314	-	3-oxoacyl-[acyl-carrier-protein] synthase II
268	 38.56	0	269148..269606	+	152	116617442	-	LEUM_0315	-	biotin carboxyl carrier protein
269	 44.12	+1	269813..270118	+	101	116617443	-	LEUM_0316	-	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase
270	 41.39	+1	270120..271496	+	458	116617444	-	LEUM_0317	-	biotin carboxylase
271	 41.28	+1	271553..272395	+	280	116617445	-	LEUM_0318	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
272	 41.79	+1	272396..273199	+	267	116617446	-	LEUM_0319	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
273	 35.93	0	273696..274196	+	166	116617447	-	LEUM_0321	-	hypothetical protein
274	 39.85	0	274513..277197	+	894	116617448	-	LEUM_0322	-	valyl-tRNA synthetase
275	 38.91	0	277377..278345	+	322	116617449	-	LEUM_0323	-	3-oxoacyl-(acyl carrier protein) synthase III
276	 40.96	0	278664..279974	+	436	116617450	-	LEUM_0324	-	muramidase
277	 38.64	0	279934..280329	+	131	116617451	-	LEUM_0325	-	cell wall-associated hydrolase
278	 38.07	0	280521..281639	+	372	116617452	-	LEUM_0326	-	muramidase
279	 36.36	0	281715..282968	+	417	116617453	-	LEUM_0327	-	peptidoglycan interpeptide bridge formation protein
280	 39.79	0	283049..285091	+	680	116617454	-	LEUM_0328	-	cell division protein FtsI/penicillin-binding protein 2
281	 31.84	-1	285214..285480	+	88	116617455	-	LEUM_0329	-	ArsR family transcriptional regulator
282	 32.23	-1	285470..286105	+	211	116617456	-	LEUM_0330	-	integral membrane protein
283	 37.86	0	286311..288299	+	662	116617457	-	LEUM_0331	-	peptide ABC transporter ATPase
284	 37.30	0	288504..289664	+	386	116617458	-	LEUM_0332	-	transcriptional regulator
285	 40.30	0	289714..290115	-	133	116617459	-	LEUM_0333	-	hypothetical protein
286	 39.50	0	290175..291098	+	307	116617460	-	LEUM_0334	-	exopolyphosphatase
287	 40.88	0	291091..292296	+	401	116617461	-	LEUM_0335	-	hydroxymethylglutaryl-CoA reductase
288	 37.64	0	292280..293230	+	316	116617462	-	LEUM_0336	-	hypothetical protein
289	 39.15	0	293272..293976	+	234	116617463	-	LEUM_0337	-	Sir2 family NAD-dependent protein deacetylase
290	 35.62	0	294078..294995	+	305	116617464	-	LEUM_0338	-	Co/Zn/Cd efflux system component
291	 38.35	0	295370..296764	+	464	116617465	-	LEUM_0339	-	manganese transporter NRAMP
292	 40.60	0	296803..297270	+	155	116617466	-	LEUM_0340	-	UspA family nucleotide-binding protein
293	 35.94	0	297355..297699	+	114	116617467	-	LEUM_0341	-	ArsR family transcriptional regulator
294	 39.05	0	298091..299647	+	518	116617468	-	LEUM_0343	-	ABC-type oligopeptide transport system, periplasmic component
295	 38.08	0	299939..300886	+	315	116617469	-	LEUM_0344	-	ribonucleoside hydrolase RihC
296	 38.61	0	300963..301682	+	239	116617470	-	LEUM_0345	-	cell division SAM-dependent methyltransferase
297	 41.73	+1	301701..302462	+	253	116617471	-	LEUM_0346	-	chromosome segregation ATPase
298	 39.89	0	302452..303351	+	299	116617472	-	LEUM_0347	-	chromosome segregation DNA-binding protein
299	 38.10	0	303351..303560	+	69	116617473	-	LEUM_0348	-	hypothetical protein
300	 40.24	0	303562..304662	+	366	116617474	-	LEUM_0349	-	GTPase, translation factor
301	 38.48	0	304707..305405	+	232	116617475	-	LEUM_0350	-	hypothetical protein
302	 38.24	0	305442..306134	+	230	116617476	-	LEUM_0351	-	DNA-binding response regulator
303	 37.48	0	306131..307216	+	361	116617477	-	LEUM_0352	-	Signal transduction histidine kinase
304	 37.08	0	307224..308558	+	444	116617478	-	LEUM_0353	-	D-alanyl-D-alanine carboxypeptidase
305	 38.46	0	308693..309394	+	233	116617479	-	LEUM_0354	-	glucosamine-6-phosphate isomerase
306	 40.80	0	309442..310794	+	450	116617480	-	LEUM_0355	-	glucose-6-phosphate isomerase
307	 36.42	0	310914..311528	-	204	116617481	-	LEUM_0356	-	GntR family transcriptional regulator
308	 39.70	0	311744..312937	+	397	116617482	-	LEUM_0357	-	ABC-type proline/glycine betaine transport system, ATPase component
309	 39.22	0	312930..314645	+	571	116617483	-	LEUM_0358	-	ABC-type proline/glycine betaine transport system, permease component
310	 36.25	0	314684..315163	-	159	116617484	-	LEUM_0359	-	hypothetical protein
311	 36.77	0	315178..316398	-	406	116617485	-	LEUM_0360	-	ABC-type Na+ efflux pump, permease component
312	 40.72	0	316391..317284	-	297	116617486	-	LEUM_0361	-	ABC-type uncharacterized transport system, ATPase component
313	 33.12	-1	317296..317763	-	155	116617487	-	LEUM_0362	-	hypothetical protein
314	 36.23	0	317756..317962	-	68	116617488	-	LEUM_0363	-	transcriptional regulator
315	 38.43	0	318106..318321	+	71	116617489	-	LEUM_0364	-	hypothetical protein
316	 29.41	-2	318663..318968	+	101	116617490	-	LEUM_0366	-	hypothetical protein
317	 34.73	0	319399..319899	-	166	116617491	-	LEUM_0367	-	amidase
318	 37.75	0	320524..321270	+	248	116617492	-	LEUM_0368	-	ABC-type amino acid transport system, permease component
319	 37.56	0	321321..322148	+	275	116617493	-	LEUM_0369	-	ABC-type amino acid transport system, periplasmic component
320	 38.01	0	322161..322865	+	234	116617494	-	LEUM_0370	-	ABC-type amino acid transport system, permease component
321	 41.60	+1	322868..323605	+	245	116617495	-	LEUM_0371	-	ABC-type polar amino acid transport system, ATPase component
322	 37.54	0	323638..324873	+	411	116617496	-	LEUM_0372	-	2-aminoadipate aminotransferase / aromatic amino acid aminotransferase
323	 36.01	0	324885..325856	+	323	116617497	-	LEUM_0373	-	lactate dehydrogenase related 2-hydroxyacid dehydrogenase
324	 39.02	0	325867..326640	+	257	116617498	-	LEUM_0374	-	ABC-type polar amino acid transport system, ATPase component
325	 37.86	0	326637..327872	+	411	116617499	-	LEUM_0375	-	major facilitator superfamily permease
326	 40.38	0	328023..329243	+	406	116617500	-	LEUM_0376	-	queuine/archaeosine tRNA-ribosyltransferase
327	 36.64	0	329335..329697	+	120	116617501	-	LEUM_0377	-	protein translocase subunit yajC
328	 37.55	0	329755..330489	+	244	116617502	-	LEUM_0378	-	alpha/beta fold family hydrolase
329	 36.41	0	330476..333010	+	844	116617503	-	LEUM_0379	-	lysyl-tRNA synthetase (class II)
330	 36.09	0	333068..333721	+	217	116617504	-	LEUM_0380	-	HD superfamily hydrolase
331	 41.21	+1	333723..334217	+	164	116617505	-	LEUM_0381	-	ADP-ribose pyrophosphatase
332	 41.40	+1	334214..334870	+	218	116617506	-	LEUM_0382	-	phosphoglycerate mutase family protein
333	 38.79	0	335069..336259	+	396	116617507	-	LEUM_0383	-	major facilitator superfamily permease
334	 38.27	0	336262..337740	+	492	116617508	-	LEUM_0384	-	glycosidase
335	 37.70	0	337936..339654	+	572	116617509	-	LEUM_0385	-	ABC-type multidrug transport system, ATPase and permease component
336	 36.98	0	339654..341435	+	593	116617510	-	LEUM_0386	-	ABC-type multidrug transport system, ATPase and permease component
337	 38.88	0	341614..342840	+	408	116617511	-	LEUM_0387	-	1,2-diacylglycerol 3-glucosyltransferase
338	 34.82	0	342841..343848	+	335	116617512	-	LEUM_0388	-	glycosyltransferase
339	 39.60	0	343858..344895	+	345	116617513	-	LEUM_0389	-	integral membrane protein
340	 34.47	-1	344888..345151	+	87	116617514	-	LEUM_0390	-	hypothetical protein
341	 36.03	0	345266..347341	+	691	116617515	-	LEUM_0391	-	phosphoglycerol transferase/alkaline phosphatase superfamily protein
342	 38.61	0	347458..349467	+	669	116617516	-	LEUM_0392	-	excinuclease ABC subunit B
343	 40.36	0	349499..352357	+	952	116617517	-	LEUM_0393	-	excinuclease ABC subunit A
344	 40.04	0	352455..353423	+	322	116617518	-	LEUM_0394	-	hypothetical protein
345	 37.67	0	353424..354368	+	314	116617519	-	LEUM_0395	-	hypothetical protein
346	 40.30	0	354456..355058	+	200	116617520	-	LEUM_0396	-	ATP-dependent Clp protease proteolytic subunit ClpP
347	 35.35	0	355130..355774	-	214	116617521	-	LEUM_0397	-	CBS domain-containing protein
348	 40.56	0	355900..356466	+	188	116617522	-	LEUM_0398	-	peptidyl-tRNA hydrolase
349	 38.84	0	356467..360006	+	1179	116617523	-	LEUM_0399	-	transcription-repair coupling factor
350	 35.11	0	360022..360303	+	93	116617524	-	LEUM_0400	-	ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein
351	 37.34	0	360385..360783	+	132	116617525	-	LEUM_0401	-	septum formation initiator
352	 38.13	0	360814..362106	+	430	116617526	-	LEUM_0402	-	tRNA(Ile)-lysidine synthetase, MesJ
353	 37.78	0	362107..362646	+	179	116617527	-	LEUM_0403	-	hypoxanthine phosphoribosyltransferase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.