IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1871	 36.59	0	1945818..1946645	-	275	116619045	-	LEUM_1972	-	ABC-type cobalt transport system, permease component CbiQ related transporter
1872	 40.91	0	1946647..1948323	-	558	116619046	-	LEUM_1973	-	ABC-type cobalt transport system, ATPase component
1873	 40.60	0	1948355..1948918	-	187	116619047	-	LEUM_1974	-	hypothetical protein
1874	 39.02	0	1948944..1949822	-	292	116619048	-	LEUM_1975	-	hypothetical protein
1875	 39.64	0	1950157..1951965	-	602	116619049	-	LEUM_1976	-	ATP-dependent DNA helicase RecQ
1876	 32.90	-1	1952012..1952470	-	152	116619050	-	LEUM_1977	-	hypothetical protein
1877	 28.80	-2	1952875..1953426	-	183	116619051	-	LEUM_1978	-	XRE family transcriptional regulator
1878	 32.76	-1	1953910..1954782	-	290	116619052	-	LEUM_1980	-	hypothetical protein
1879	 31.60	-1	1954922..1955209	-	95	116619053	-	LEUM_1981	-	hypothetical protein
1880	 24.38	-2	1955314..1955514	-	66	116619054	-	LEUM_1982	-	transcriptional regulator
1881	 26.28	-2	1955525..1955836	-	103	116619055	-	LEUM_1983	-	hypothetical protein
1882	 35.65	0	1956169..1956513	-	114	116619056	-	LEUM_1984	-	hypothetical protein
1883	 33.33	-1	1956649..1956810	+	53	116619057	-	LEUM_1985	-	hypothetical protein
1884	 26.44	-2	1956952..1957125	-	57	116619058	-	LEUM_1986	-	hypothetical protein
1885	 36.33	0	1957148..1957981	-	277	116619059	-	LEUM_1987	-	hypothetical protein
1886	 38.82	0	1958137..1958646	-	169	116619060	-	LEUM_1988	-	Zn finger protein
1887	 24.87	-2	1958891..1959079	-	62	116619061	-	LEUM_1989	-	hypothetical protein
1888	 36.13	0	1959096..1959953	-	285	116619062	-	LEUM_1990	-	hypothetical protein
1889	 28.46	-2	1960097..1960465	-	122	116619063	-	LEUM_1991	-	hypothetical protein
1890	 42.11	+1	1960812..1961540	-	242	116619064	araD	LEUM_1992	-	L-ribulose-5-phosphate 4-epimerase
1891	 35.30	0	1961543..1962406	-	287	116619065	-	LEUM_1993	-	putative L-xylulose 5-phosphate 3-epimerase
1892	 40.38	0	1962409..1963047	-	212	116619066	ulaD	LEUM_1994	-	3-keto-L-gulonate-6-phosphate decarboxylase
1893	 34.97	0	1963058..1963363	-	101	116619067	-	LEUM_1995	-	phosphotransferase system, galactitol-specific IIB component
1894	 38.16	0	1963400..1964911	-	503	116619068	ulaA	LEUM_1996	-	ascorbate-specific PTS system enzyme IIC
1895	 35.43	0	1964925..1965401	-	158	116619069	-	LEUM_1997	-	phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
1896	 39.29	0	1965414..1966487	-	357	116619070	-	LEUM_1998	-	putative L-ascorbate 6-phosphate lactonase
1897	 33.60	-1	1966708..1968219	+	503	116619071	-	LEUM_1999	-	transcriptional antiterminator
1898	 34.18	-1	1968209..1969030	+	273	116619072	-	LEUM_2000	-	HAD superfamily hydrolase
1899	 37.41	0	1969170..1970126	+	318	116619073	-	LEUM_2001	-	hypothetical protein
1900	 34.50	-1	1970250..1971701	-	483	116619074	-	LEUM_2002	-	hypothetical protein
1901	 34.15	-1	1971694..1972185	-	163	116619075	-	LEUM_2003	-	hypothetical protein
1902	 31.70	-1	1972659..1973087	-	142	116619076	-	LEUM_2004	-	transcriptional regulator
1903	 33.13	-1	1973207..1973695	+	162	116619077	-	LEUM_2005	-	acetyltransferase
1904	 41.59	+1	1973702..1975057	-	451	116619078	-	LEUM_2006	-	Na+/H+ antiporter
1905	 29.76	-2	1975415..1975666	-	83	116619079	-	LEUM_2007	-	hypothetical protein
1906	 38.87	0	1975814..1977004	-	396	116619080	-	LEUM_2008	-	NADH:flavin oxidoreductase
1907	 38.54	0	1977146..1977433	+	95	116619081	-	LEUM_2009	-	transcriptional regulator
1908	 39.18	0	1977608..1978582	-	324	116619082	-	LEUM_2010	-	aryl-alcohol dehydrogenase
1909	 32.06	-1	1978675..1979145	+	156	116619083	-	LEUM_2011	-	transcriptional regulator
1910	 37.22	0	1979156..1980133	-	325	116619084	-	LEUM_2012	-	aryl-alcohol dehydrogenase
1911	 35.48	0	1980677..1981189	+	170	116619085	-	LEUM_2013	-	phosphoribosylanthranilate isomerase
1912	 38.20	0	1981191..1982423	-	410	116619086	-	LEUM_2014	-	major facilitator superfamily permease
1913	 29.08	-2	1982499..1982639	-	46	116619087	-	LEUM_2015	-	hypothetical protein
1914	 40.59	0	1982839..1984299	+	486	116619088	-	LEUM_2016	-	glucose-6-phosphate 1-dehydrogenase
1915	 36.89	0	1984346..1985245	-	299	116619089	-	LEUM_2017	-	D-alanyl-D-alanine carboxypeptidase
1916	 39.23	0	1985341..1985781	+	146	116619090	-	LEUM_2018	-	transcriptional regulator
1917	 38.44	0	1985778..1986659	+	293	116619091	-	LEUM_2019	-	ABC-type metal ion transport system, periplasmic component/surface adhesin
1918	 37.97	0	1986764..1987474	-	236	116619092	ubiE	LEUM_2020	-	ubiquinone/menaquinone biosynthesis methyltransferase
1919	 38.89	0	1987471..1988910	-	479	116619093	-	LEUM_2021	-	O-succinylbenzoic acid--CoA ligase
1920	 38.37	0	1988986..1989501	-	171	116619094	-	LEUM_2022	-	acetyltransferase
1921	 38.01	0	1989659..1990684	-	341	116619095	-	LEUM_2023	-	high-affinity nickel permease
1922	 35.38	0	1991177..1992154	-	325	116619096	-	LEUM_2024	-	hypothetical protein
1923	 39.77	0	1992156..1992761	-	201	116619097	-	LEUM_2025	-	hypothetical protein
1924	 37.86	0	1992766..1993074	-	102	116619098	-	LEUM_2026	-	PadR family transcriptional regulator
1925	 39.42	0	1993279..1994067	-	262	116619099	-	LEUM_2027	-	putative translation factor (SUA5)
1926	 40.79	0	1994085..1995371	-	428	116619100	-	LEUM_2028	-	major facilitator superfamily permease
1927	 36.07	0	1995382..1995966	-	194	116619101	-	LEUM_2029	-	3-isopropylmalate dehydratase, small subunit
1928	 42.48	+1	1995976..1997352	-	458	116619102	-	LEUM_2030	-	3-isopropylmalate dehydratase, large subunit
1929	 40.50	0	1997349..1998422	-	357	116619103	-	LEUM_2031	-	3-isopropylmalate dehydrogenase
1930	 39.90	0	1998424..1999596	-	390	116619104	-	LEUM_2032	-	2-isopropylmalate synthase
1931	 36.93	0	1999899..2000204	-	101	116619105	-	LEUM_2033	-	metal-sulfur cluster biosynthetic protein
1932	 39.41	0	2000208..2001638	-	476	116619106	-	LEUM_2034	-	Fe-S cluster assembly ABC-type transport system, permease component
1933	 39.08	0	2001652..2002086	-	144	116619107	-	LEUM_2035	-	Fe-S cluster formation protein, NifU-like
1934	 39.45	0	2002073..2003299	-	408	116619108	-	LEUM_2036	-	cysteine sulfinate desulfinase/cysteine desulfurase
1935	 40.25	0	2003286..2004470	-	394	116619109	-	LEUM_2037	-	Fe-S cluster assembly ABC-type transport system, permease component
1936	 39.58	0	2004472..2005272	-	266	116619110	-	LEUM_2038	-	Fe-S cluster assembly ABC-type transport system, ATPase component
1937	 34.40	-1	2005274..2006116	-	280	116619111	-	LEUM_2039	-	XRE family transcriptional regulator
1938	 43.89	+1	2006565..2008307	+	580	116619112	-	LEUM_2040	-	dihydroxyacid dehydratase
1939	 41.74	+1	2008343..2008663	+	106	116619113	-	LEUM_2041	-	metal-sulfur cluster biosynthetic protein
1940	 38.63	0	2008705..2009667	+	320	116619114	-	LEUM_2042	-	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit
1941	 40.10	0	2009758..2010747	-	329	116619115	-	LEUM_2043	-	lactate dehydrogenase
1942	 38.30	0	2010778..2012025	-	415	116619116	-	LEUM_2044	-	tyrosyl-tRNA synthetase
1943	 39.60	0	2012419..2012769	+	116	116619117	-	LEUM_2045	-	PadR family transcriptional regulator
1944	 37.83	0	2012756..2014090	+	444	116619118	-	LEUM_2046	-	hypothetical protein
1945	 39.77	0	2014146..2014409	+	87	116619119	-	LEUM_2047	-	putative stress-responsive transcriptional regulator
1946	 38.70	0	2014491..2015384	-	297	116619120	-	LEUM_2048	-	esterase/lipase
1947	 38.63	0	2015513..2016967	+	484	116619121	-	LEUM_2049	-	glutamate-cysteine ligase
1948	 38.07	0	2017003..2018184	-	393	116619122	-	LEUM_2050	-	peptide ABC transporter permease
1949	 38.84	0	2018171..2018860	-	229	116619123	-	LEUM_2051	-	peptide ABC transporter ATPase
1950	 38.14	0	2018853..2019893	-	346	116619124	-	LEUM_2052	-	hypothetical protein
1951	 33.95	-1	2019960..2020448	-	162	116619125	-	LEUM_2053	-	hypothetical protein
1952	 35.68	0	2020877..2021644	+	255	116619126	-	LEUM_2054	-	hypothetical protein
1953	 41.95	+1	2022104..2022892	+	262	116619127	-	LEUM_2055	-	2-keto-4-pentenoate hydratase
1954	 39.38	0	2023012..2024004	-	330	116619128	-	LEUM_2057	-	hypothetical protein
1955	 35.39	0	2024144..2024971	+	275	116619129	-	LEUM_2058	-	transcriptional regulator
1956	 37.19	0	2024966..2025535	-	189	116619130	-	LEUM_2059	-	adenine/guanine phosphoribosyltransferase-like protein
1957	 34.52	0	2025655..2026578	-	307	116619131	-	LEUM_2060	-	Mg2+ and Co2+ transporter
1958	 38.71	0	2026575..2027039	-	154	116619132	-	LEUM_2061	-	acetyltransferase
1959	 37.13	0	2027008..2027613	-	201	116619133	-	LEUM_2062	-	Signal peptidase I
1960	 39.90	0	2027731..2028567	-	278	116619134	-	LEUM_2063	-	preprotein translocase subunit YidC
1961	 33.90	-1	2028564..2028914	-	116	116619135	-	LEUM_2064	-	RNase P protein component
1962	 51.11	+2	2029053..2029187	-	44	116619136	-	LEUM_2065	-	50S ribosomal protein L34P
1963	 35.41	0	2029466..2030140	+	224	116619137	-	LEUM_2066	-	Crp/FNR family transcriptional regulator
1964	 40.27	0	2030220..2031575	+	451	116619138	-	LEUM_2067	-	NAD(FAD)-dependent dehydrogenase
1965	 29.63	-2	2031751..2032020	-	89	116619139	-	LEUM_2068	-	hypothetical protein
1966	 42.01	+1	2032231..2033094	-	287	116619140	-	LEUM_2069	-	3-hydroxyisobutyrate dehydrogenase related enzyme
1967	 37.90	0	2033149..2033958	-	269	116619141	-	LEUM_2070	-	HAD superfamily hydrolase
1968	 42.09	+1	2034066..2035916	-	616	116619142	-	LEUM_2071	-	FAD(NAD)-dependent oxidoreductase
1969	 38.48	0	2036094..2036987	-	297	116619143	-	LEUM_2072	-	AEC family permease
1970	 36.86	0	2037164..2037787	-	207	116619144	-	LEUM_2073	-	carbonic anhydrase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.