IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
147	 42.89	+1	164261..164731	+	156	116617321	-	LEUM_0188	-	30S ribosomal protein S7
148	 42.09	+1	164892..167003	+	703	116617322	-	LEUM_0189	-	translation elongation factor 2 (EF-2/EF-G)
149	 38.11	0	167094..168287	+	397	116617323	-	LEUM_0190	-	cyanate permease
150	 36.95	0	168368..169474	+	368	116617324	-	LEUM_0191	-	ABC-type spermidine/putrescine transport systems, ATPase component
151	 37.97	0	169464..170282	+	272	116617325	-	LEUM_0192	-	spermidine/putrescine ABC transporter permease protein
152	 36.46	0	170296..171126	+	276	116617326	-	LEUM_0193	-	spermidine/putrescine ABC transporter permease protein
153	 34.91	0	171128..172207	+	359	116617327	-	LEUM_0194	-	spermidine/putrescine-binding periplasmic protein
154	 43.37	+1	172504..172812	+	102	116617328	-	LEUM_0195	-	SSU ribosomal protein S10P
155	 43.67	+1	172886..173572	+	228	116617329	-	LEUM_0196	-	50S ribosomal protein L3P
156	 41.19	0	173605..174228	+	207	116617330	-	LEUM_0197	-	50S ribosomal protein L4P
157	 40.28	0	174228..174515	+	95	116617331	-	LEUM_0198	-	50S ribosomal protein L23P
158	 45.32	+2	174537..175370	+	277	116617332	rplB	LEUM_0199	-	50S ribosomal protein L2
159	 42.29	+1	175388..175666	+	92	116617333	-	LEUM_0200	-	SSU ribosomal protein S19P
160	 43.98	+1	175681..176037	+	118	116617334	-	LEUM_0201	-	50S ribosomal protein L22P
161	 43.90	+1	176037..176708	+	223	116617335	-	LEUM_0202	-	SSU ribosomal protein S3P
162	 44.93	+2	176723..177136	+	137	116617336	rplP	LEUM_0203	-	50S ribosomal protein L16
163	 41.55	+1	177136..177342	+	68	116617337	-	LEUM_0204	-	50S ribosomal protein L29P
164	 39.33	0	177365..177631	+	88	116617338	-	LEUM_0205	-	SSU ribosomal protein S17P
165	 45.53	+2	177680..178048	+	122	116617339	-	LEUM_0206	-	50S ribosomal protein L14P
166	 42.39	+1	178072..178380	+	102	116617340	-	LEUM_0207	-	50S ribosomal protein L24P
167	 39.41	0	178404..178946	+	180	116617341	rplE	LEUM_0208	-	50S ribosomal protein L5
168	 41.10	0	179080..179478	+	132	116617342	-	LEUM_0209	-	SSU ribosomal protein S8P
169	 42.09	+1	179503..180039	+	178	116617343	-	LEUM_0210	-	50S ribosomal protein L6P
170	 44.92	+2	180120..180473	+	117	116617344	-	LEUM_0211	-	50S ribosomal protein L18P
171	 44.77	+2	180493..180999	+	168	116617345	-	LEUM_0212	-	SSU ribosomal protein S5P
172	 43.17	+1	181011..181193	+	60	116617346	rpmD	LEUM_0213	-	50S ribosomal protein L30
173	 42.07	+1	181224..181658	+	144	116617347	-	LEUM_0214	-	50S ribosomal protein L15P
174	 38.43	0	181658..182992	+	444	116617348	-	LEUM_0215	-	protein translocase subunit secY/sec61 alpha
175	 39.72	0	182985..183548	+	187	116617349	-	LEUM_0216	-	adenylate kinase
176	 41.20	0	183655..183870	+	71	116617350	-	LEUM_0217	-	translation initiation factor 1
177	 42.50	+1	183915..184034	+	39	116617351	-	LEUM_0218	-	50S ribosomal protein L36P
178	 44.09	+1	184111..184482	+	123	116617352	rpsM	LEUM_0219	-	30S ribosomal protein S13
179	 47.03	+2	184608..184994	+	128	116617353	-	LEUM_0220	-	30S ribosomal protein S11
180	 42.65	+1	185042..185986	+	314	116617354	-	LEUM_0221	-	DNA-directed RNA polymerase, alpha subunit/40 kD subunit
181	 42.45	+1	186023..186406	+	127	116617355	-	LEUM_0222	-	50S ribosomal protein L17P
182	 36.34	0	186448..187446	-	332	116617356	-	LEUM_0223	-	geranylgeranyl pyrophosphate synthase
183	 40.04	0	187515..189185	-	556	116617357	-	LEUM_0224	-	NADH dehydrogenase, FAD-containing subunit
184	 39.07	0	189360..190178	+	272	116617358	-	LEUM_0225	-	ABC-type cobalt transport system, ATPase component
185	 40.44	0	190154..191011	+	285	116617359	-	LEUM_0226	-	ABC-type cobalt transport system, ATPase component
186	 38.18	0	191004..191807	+	267	116617360	-	LEUM_0227	-	ABC-type cobalt transport system, permease component CbiQ related transporter
187	 39.84	0	191828..192595	+	255	116617361	-	LEUM_0228	-	pseudouridylate synthase
188	 36.25	0	192645..193055	+	136	116617362	-	LEUM_0229	-	hypothetical protein
189	 42.57	+1	193193..193636	+	147	116617363	rplM	LEUM_0230	-	50S ribosomal protein L13
190	 43.69	+1	193655..194050	+	131	116617364	-	LEUM_0231	-	SSU ribosomal protein S9P
191	 32.03	-1	194240..195157	+	305	116617365	-	LEUM_0232	-	fhu operon transcription regulator
192	 39.66	0	195180..196364	-	394	116617366	-	LEUM_0233	-	NADH:flavin oxidoreductase
193	 29.41	-2	196602..196805	-	67	116617367	-	LEUM_0234	-	hypothetical protein
194	 34.82	0	197625..197960	+	111	116617368	-	LEUM_0238	-	hypothetical protein
195	 43.70	+1	197957..198766	+	269	116617369	-	LEUM_0239	-	triosephosphate isomerase
196	 42.99	+1	198908..200233	+	441	116617370	-	LEUM_0240	-	enolase
197	 36.39	0	200330..200917	+	195	116617371	-	LEUM_0241	-	DNA-3-methyladenine glycosylase I
198	 38.13	0	200993..202471	+	492	116617372	-	LEUM_0242	-	exopolyphosphatase
199	 37.65	0	202480..204612	+	710	116617373	-	LEUM_0243	-	polyphosphate kinase
200	 40.58	0	204609..205574	+	321	116617374	-	LEUM_0244	-	exopolyphosphatase
201	 36.32	0	205711..206346	-	211	116617375	-	LEUM_0246	-	hypothetical protein
202	 37.78	0	206364..207644	+	426	116617376	-	LEUM_0247	-	superfamily II DNA/RNA helicase
203	 36.74	0	207658..208332	+	224	116617377	-	LEUM_0248	-	amidophosphoribosyltransferase
204	 37.18	0	208469..209014	+	181	116617378	-	LEUM_0249	-	SSU ribosomal protein S30P / sigma 54 modulation protein
205	 37.56	0	209162..210700	+	512	116617379	-	LEUM_0250	-	hypothetical protein
206	 38.54	0	210744..211415	-	223	116617380	-	LEUM_0251	-	phosphoglycerate mutase family protein
207	 37.19	0	211509..212909	-	466	116617381	-	LEUM_0252	-	hemolysin-like protein
208	 38.53	0	213338..213568	+	76	116617382	-	LEUM_0253	-	glutaredoxin-like protein
209	 37.57	0	213736..215907	+	723	116617383	-	LEUM_0254	-	ribonucleotide-diphosphate reductase subunit alpha
210	 36.73	0	215944..216384	+	146	116617384	-	LEUM_0255	-	ribonucleotide reduction protein
211	 35.17	0	216387..217364	+	325	116617385	nrdF	LEUM_0256	-	ribonucleotide-diphosphate reductase subunit beta
212	 36.49	0	217395..218060	-	221	116617386	-	LEUM_0257	-	membrane-associated phospholipid phosphatase
213	 41.16	0	218177..219172	-	331	116617387	-	LEUM_0258	-	ketopantoate reductase
214	 36.71	0	219352..220002	+	216	116617388	-	LEUM_0259	-	glycopeptide antibiotics resistance protein
215	 41.49	+1	220345..221337	+	330	116617389	-	LEUM_0260	-	Actin-like ATPase for cell morphogenesis
216	 33.33	-1	221337..221546	+	69	116617390	-	LEUM_0261	-	hypothetical protein
217	 38.85	0	221676..222890	+	404	116617391	-	LEUM_0262	-	cell division membrane protein
218	 38.01	0	222890..223894	+	334	116617392	-	LEUM_0263	-	hypothetical protein
219	 38.27	0	223938..225071	+	377	116617393	-	LEUM_0264	-	D-alanine--D-alanine ligase
220	 36.41	0	225157..225741	+	194	116617394	-	LEUM_0265	-	TetR family transcriptional regulator
221	 37.22	0	225752..225931	+	59	116617395	-	LEUM_0266	-	ribosomal protein L33
222	 33.90	-1	225942..226118	+	58	116617396	-	LEUM_0267	-	protein translocase subunit secE/sec61 gamma
223	 40.93	0	226197..226775	+	192	116617397	-	LEUM_0268	-	transcription antitermination protein nusG
224	 43.66	+1	226902..227366	+	154	116617398	-	LEUM_0269	-	50S ribosomal protein L11P
225	 44.16	+1	227366..228058	+	230	116617399	-	LEUM_0270	-	50S ribosomal protein L1P
226	 42.27	+1	228242..228778	+	178	116617400	-	LEUM_0271	-	50S ribosomal protein L10P
227	 45.90	+2	228823..229188	+	121	116617401	-	LEUM_0272	-	50S ribosomal protein L12P
228	 38.36	0	229288..229923	+	211	116617402	-	LEUM_0273	-	16S RNA G1207 methylase RsmC
229	 41.62	+1	229901..230407	+	168	116617403	-	LEUM_0274	-	tRNA-adenosine deaminase
230	 35.07	0	230471..230989	+	172	116617404	-	LEUM_0275	-	HD superfamily hydrolase
231	 39.99	0	231240..232967	+	575	116617405	-	LEUM_0276	-	DNA polymerase III, gamma/tau subunit
232	 39.10	0	232986..233627	+	213	116617406	-	LEUM_0277	-	DNA replication and repair protein RecR
233	 37.16	0	233624..233884	+	86	116617407	-	LEUM_0278	-	hypothetical protein
234	 38.79	0	233915..234556	+	213	116617408	-	LEUM_0279	-	thymidylate kinase
235	 38.79	0	234553..234882	+	109	116617409	-	LEUM_0280	-	hypothetical protein
236	 39.20	0	234882..235784	+	300	116617410	-	LEUM_0281	-	DNA polymerase III, delta prime subunit
237	 39.89	0	235786..236655	+	289	116617411	-	LEUM_0282	-	methyltransferase
238	 34.56	0	236657..237388	+	243	116617412	-	LEUM_0283	-	Acyl-ACP thioesterase
239	 40.28	0	237417..238409	+	330	116617413	-	LEUM_0284	-	UDP-galactose 4-epimerase
240	 40.30	0	238607..239080	+	157	116617414	-	LEUM_0285	-	Fe2+ transport system protein A
241	 36.78	0	239084..241198	+	704	116617415	-	LEUM_0286	-	Fe2+ transport system protein B
242	 39.03	0	241727..242692	-	321	116617416	-	LEUM_0287	-	LacI family transcription regulator
243	 40.88	0	242852..244813	+	653	116617417	-	LEUM_0288	-	sucrose PTS, EIIBCA
244	 36.18	0	244866..246131	+	421	116617418	-	LEUM_0289	-	beta-fructofuranosidase
245	 41.87	+1	246232..247098	+	288	116617419	-	LEUM_0290	-	branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / fructokinase
246	 38.50	0	247666..248439	+	257	116617420	-	LEUM_0292	-	M15B family D-Ala-D-Ala carboxypeptidase VanY
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.