IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1822	 41.79	+1	1890045..1891262	-	405	116618996	-	LEUM_1921	-	phosphoglycerate kinase
1823	 35.98	0	1891348..1892178	-	276	116618997	-	LEUM_1922	-	hypothetical protein
1824	 37.00	0	1892175..1893620	-	481	116618998	-	LEUM_1923	-	glycosyltransferase
1825	 38.42	0	1893959..1894843	-	294	116618999	-	LEUM_1926	-	hypothetical protein
1826	 40.94	0	1894937..1896829	-	630	116619000	-	LEUM_1927	-	oligopeptidase O3
1827	 39.10	0	1896935..1897870	-	311	116619001	-	LEUM_1928	-	ABC-type oligopeptide transport system, ATPase component
1828	 40.29	0	1897873..1898922	-	349	116619002	-	LEUM_1929	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
1829	 38.69	0	1898937..1899962	-	341	116619003	-	LEUM_1930	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
1830	 39.32	0	1899974..1900891	-	305	116619004	-	LEUM_1931	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
1831	 39.45	0	1900975..1902609	-	544	116619005	-	LEUM_1932	-	ABC-type oligopeptide transport system, periplasmic component
1832	 36.36	0	1902963..1903622	-	219	116619006	-	LEUM_1933	-	ABC-type amino acid transport system, permease component
1833	 36.76	0	1903633..1904274	-	213	116619007	-	LEUM_1934	-	ABC-type amino acid transport system, permease component
1834	 38.06	0	1904274..1905140	-	288	116619008	-	LEUM_1935	-	amino acid ABC transporter periplasmic protein
1835	 38.21	0	1905232..1905969	-	245	116619009	-	LEUM_1936	-	ABC-type polar amino acid transport system, ATPase component
1836	 39.17	0	1906153..1907952	-	599	116619010	-	LEUM_1937	-	ABC-type multidrug transport system, ATPase and permease component
1837	 38.83	0	1907936..1909717	-	593	116619011	-	LEUM_1938	-	ABC-type multidrug transport system, ATPase and permease component
1838	 36.81	0	1909806..1910813	-	335	116619012	-	LEUM_1939	-	hypothetical protein
1839	 43.01	+1	1910901..1911995	-	364	116619013	-	LEUM_1940	-	aspartate semialdehyde dehydrogenase
1840	 42.86	+1	1912005..1913117	-	370	116619014	-	LEUM_1941	-	alanine racemase
1841	 42.04	+1	1913509..1914174	+	221	116619015	-	LEUM_1942	-	hypothetical protein
1842	 34.88	0	1914259..1914711	-	150	116619016	-	LEUM_1943	-	BadM/Rrf2 family transcriptional regulator
1843	 40.03	0	1914765..1916930	-	721	116619017	-	LEUM_1944	-	hypothetical protein
1844	 37.71	0	1917024..1917503	-	159	116619018	-	LEUM_1945	-	SPOUT methyltransferase superfamily protein
1845	 40.18	0	1918134..1919273	-	379	116619019	-	LEUM_1946	-	trypsin-like serine protease
1846	 35.32	0	1919334..1920137	-	267	116619020	-	LEUM_1947	-	hypothetical protein
1847	 36.74	0	1920194..1921486	-	430	116619021	-	LEUM_1948	-	hypothetical protein
1848	 39.42	0	1921476..1923347	-	623	116619022	-	LEUM_1949	-	PAS/PAC sensor signal transduction histidine kinase
1849	 38.56	0	1923409..1924116	-	235	116619023	-	LEUM_1950	-	DNA-binding response regulator
1850	 41.08	0	1924225..1925205	-	326	116619024	-	LEUM_1951	-	phosphoribosylpyrophosphate synthetase
1851	 38.96	0	1925310..1925807	-	165	116619025	-	LEUM_1952	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
1852	 38.38	0	1925907..1926719	-	270	116619026	-	LEUM_1953	-	HAD superfamily hydrolase
1853	 37.43	0	1926827..1927753	-	308	116619027	-	LEUM_1954	-	3-isopropylmalate dehydrogenase
1854	 37.66	0	1927856..1928248	+	130	116619028	-	LEUM_1955	-	endoribonuclease L-PSP
1855	 41.31	+1	1928284..1929549	-	421	116619029	-	LEUM_1956	-	threonine dehydratase
1856	 41.67	+1	1929621..1930664	-	347	116619030	-	LEUM_1957	-	ketol-acid reductoisomerase
1857	 33.33	-1	1930701..1930946	-	81	116619031	-	LEUM_1958	-	acetolactate synthase small subunit
1858	 41.33	+1	1930946..1932658	-	570	116619032	-	LEUM_1959	-	acetolactate synthase, large subunit
1859	 36.36	0	1932977..1933768	+	263	116619033	-	LEUM_1960	-	ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
1860	 41.61	+1	1934181..1936622	-	813	116619034	-	LEUM_1961	-	putative phosphoketolase
1861	 40.47	0	1936809..1937537	-	242	116619035	-	LEUM_1962	-	GntR family transcriptional regulator
1862	 40.53	0	1937630..1938115	+	161	116619036	-	LEUM_1963	-	hypothetical protein
1863	 33.52	-1	1938108..1938650	+	180	116619037	-	LEUM_1964	-	hypothetical protein
1864	 40.44	0	1938789..1940252	-	487	116619038	-	LEUM_1965	-	primary replicative DNA helicase
1865	 39.96	0	1940254..1940706	-	150	116619039	-	LEUM_1966	-	50S ribosomal protein L9P
1866	 40.58	0	1940723..1942750	-	675	116619040	-	LEUM_1967	-	signal protein
1867	 43.16	+1	1942920..1943204	-	94	116619041	-	LEUM_1968	-	SSU ribosomal protein S18P
1868	 42.15	+1	1943237..1943803	-	188	116619042	-	LEUM_1969	-	single-stranded DNA-binding protein
1869	 40.74	0	1943837..1944133	-	98	116619043	-	LEUM_1970	-	ribosomal protein S6
1870	 40.11	0	1944391..1945821	-	476	116619044	-	LEUM_1971	-	dipeptidase
1871	 36.59	0	1945818..1946645	-	275	116619045	-	LEUM_1972	-	ABC-type cobalt transport system, permease component CbiQ related transporter
1872	 40.91	0	1946647..1948323	-	558	116619046	-	LEUM_1973	-	ABC-type cobalt transport system, ATPase component
1873	 40.60	0	1948355..1948918	-	187	116619047	-	LEUM_1974	-	hypothetical protein
1874	 39.02	0	1948944..1949822	-	292	116619048	-	LEUM_1975	-	hypothetical protein
1875	 39.64	0	1950157..1951965	-	602	116619049	-	LEUM_1976	-	ATP-dependent DNA helicase RecQ
1876	 32.90	-1	1952012..1952470	-	152	116619050	-	LEUM_1977	-	hypothetical protein
1877	 28.80	-2	1952875..1953426	-	183	116619051	-	LEUM_1978	-	XRE family transcriptional regulator
1878	 32.76	-1	1953910..1954782	-	290	116619052	-	LEUM_1980	-	hypothetical protein
1879	 31.60	-1	1954922..1955209	-	95	116619053	-	LEUM_1981	-	hypothetical protein
1880	 24.38	-2	1955314..1955514	-	66	116619054	-	LEUM_1982	-	transcriptional regulator
1881	 26.28	-2	1955525..1955836	-	103	116619055	-	LEUM_1983	-	hypothetical protein
1882	 35.65	0	1956169..1956513	-	114	116619056	-	LEUM_1984	-	hypothetical protein
1883	 33.33	-1	1956649..1956810	+	53	116619057	-	LEUM_1985	-	hypothetical protein
1884	 26.44	-2	1956952..1957125	-	57	116619058	-	LEUM_1986	-	hypothetical protein
1885	 36.33	0	1957148..1957981	-	277	116619059	-	LEUM_1987	-	hypothetical protein
1886	 38.82	0	1958137..1958646	-	169	116619060	-	LEUM_1988	-	Zn finger protein
1887	 24.87	-2	1958891..1959079	-	62	116619061	-	LEUM_1989	-	hypothetical protein
1888	 36.13	0	1959096..1959953	-	285	116619062	-	LEUM_1990	-	hypothetical protein
1889	 28.46	-2	1960097..1960465	-	122	116619063	-	LEUM_1991	-	hypothetical protein
1890	 42.11	+1	1960812..1961540	-	242	116619064	araD	LEUM_1992	-	L-ribulose-5-phosphate 4-epimerase
1891	 35.30	0	1961543..1962406	-	287	116619065	-	LEUM_1993	-	putative L-xylulose 5-phosphate 3-epimerase
1892	 40.38	0	1962409..1963047	-	212	116619066	ulaD	LEUM_1994	-	3-keto-L-gulonate-6-phosphate decarboxylase
1893	 34.97	0	1963058..1963363	-	101	116619067	-	LEUM_1995	-	phosphotransferase system, galactitol-specific IIB component
1894	 38.16	0	1963400..1964911	-	503	116619068	ulaA	LEUM_1996	-	ascorbate-specific PTS system enzyme IIC
1895	 35.43	0	1964925..1965401	-	158	116619069	-	LEUM_1997	-	phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
1896	 39.29	0	1965414..1966487	-	357	116619070	-	LEUM_1998	-	putative L-ascorbate 6-phosphate lactonase
1897	 33.60	-1	1966708..1968219	+	503	116619071	-	LEUM_1999	-	transcriptional antiterminator
1898	 34.18	-1	1968209..1969030	+	273	116619072	-	LEUM_2000	-	HAD superfamily hydrolase
1899	 37.41	0	1969170..1970126	+	318	116619073	-	LEUM_2001	-	hypothetical protein
1900	 34.50	-1	1970250..1971701	-	483	116619074	-	LEUM_2002	-	hypothetical protein
1901	 34.15	-1	1971694..1972185	-	163	116619075	-	LEUM_2003	-	hypothetical protein
1902	 31.70	-1	1972659..1973087	-	142	116619076	-	LEUM_2004	-	transcriptional regulator
1903	 33.13	-1	1973207..1973695	+	162	116619077	-	LEUM_2005	-	acetyltransferase
1904	 41.59	+1	1973702..1975057	-	451	116619078	-	LEUM_2006	-	Na+/H+ antiporter
1905	 29.76	-2	1975415..1975666	-	83	116619079	-	LEUM_2007	-	hypothetical protein
1906	 38.87	0	1975814..1977004	-	396	116619080	-	LEUM_2008	-	NADH:flavin oxidoreductase
1907	 38.54	0	1977146..1977433	+	95	116619081	-	LEUM_2009	-	transcriptional regulator
1908	 39.18	0	1977608..1978582	-	324	116619082	-	LEUM_2010	-	aryl-alcohol dehydrogenase
1909	 32.06	-1	1978675..1979145	+	156	116619083	-	LEUM_2011	-	transcriptional regulator
1910	 37.22	0	1979156..1980133	-	325	116619084	-	LEUM_2012	-	aryl-alcohol dehydrogenase
1911	 35.48	0	1980677..1981189	+	170	116619085	-	LEUM_2013	-	phosphoribosylanthranilate isomerase
1912	 38.20	0	1981191..1982423	-	410	116619086	-	LEUM_2014	-	major facilitator superfamily permease
1913	 29.08	-2	1982499..1982639	-	46	116619087	-	LEUM_2015	-	hypothetical protein
1914	 40.59	0	1982839..1984299	+	486	116619088	-	LEUM_2016	-	glucose-6-phosphate 1-dehydrogenase
1915	 36.89	0	1984346..1985245	-	299	116619089	-	LEUM_2017	-	D-alanyl-D-alanine carboxypeptidase
1916	 39.23	0	1985341..1985781	+	146	116619090	-	LEUM_2018	-	transcriptional regulator
1917	 38.44	0	1985778..1986659	+	293	116619091	-	LEUM_2019	-	ABC-type metal ion transport system, periplasmic component/surface adhesin
1918	 37.97	0	1986764..1987474	-	236	116619092	ubiE	LEUM_2020	-	ubiquinone/menaquinone biosynthesis methyltransferase
1919	 38.89	0	1987471..1988910	-	479	116619093	-	LEUM_2021	-	O-succinylbenzoic acid--CoA ligase
1920	 38.37	0	1988986..1989501	-	171	116619094	-	LEUM_2022	-	acetyltransferase
1921	 38.01	0	1989659..1990684	-	341	116619095	-	LEUM_2023	-	high-affinity nickel permease
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.