IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1804	 35.67	0	1876871..1877212	+	113	116618978	-	LEUM_1902	-	hypothetical protein
1805	 33.33	-1	1877311..1877811	+	166	116618979	-	LEUM_1903	-	TPR repeat-containing protein
1806	 31.77	-1	1877946..1878521	+	191	116618980	-	LEUM_1904	-	hypothetical protein
1807	 31.37	-1	1878789..1878941	+	50	116618981	-	LEUM_1905	-	hypothetical protein
1808	 31.62	-1	1879054..1879287	+	77	116618982	-	LEUM_1906	-	hypothetical protein
1809	 34.06	-1	1879371..1879646	+	91	116618983	-	LEUM_1907	-	hypothetical protein
1810	 32.37	-1	1879716..1879922	+	68	116618984	-	LEUM_1908	-	hypothetical protein
1811	 36.48	0	1879970..1880128	+	52	116618985	-	LEUM_1909	-	hypothetical protein
1812	 35.42	0	1880191..1880430	+	79	116618986	-	LEUM_1910	-	hypothetical protein
1813	 30.12	-2	1880539..1880880	+	113	116618987	-	LEUM_1911	-	hypothetical protein
1814	 32.34	-1	1881017..1881823	-	268	116618988	-	LEUM_1912	-	mRNA degradation ribonuclease J1/J2enzyme
1815	 33.33	-1	1882225..1882596	+	123	116618989	-	LEUM_1913	-	hypothetical protein
1816	 41.04	0	1883091..1884647	-	518	116618990	-	LEUM_1915	-	ABC transporter ATPase
1817	 35.34	0	1884668..1885615	-	315	116618991	-	LEUM_1916	-	XRE family transcriptional regulator
1818	 34.50	-1	1885729..1887009	+	426	116618992	-	LEUM_1917	-	major facilitator superfamily permease
1819	 40.24	0	1887015..1887347	+	110	116618993	-	LEUM_1918	-	lactoylglutathione lyase related lyase
1820	 43.30	+1	1887402..1888454	-	350	116618994	-	LEUM_1919	-	alcohol dehydrogenase
1821	 40.49	0	1888625..1889896	-	423	116618995	-	LEUM_1920	-	major facilitator superfamily permease
1822	 41.79	+1	1890045..1891262	-	405	116618996	-	LEUM_1921	-	phosphoglycerate kinase
1823	 35.98	0	1891348..1892178	-	276	116618997	-	LEUM_1922	-	hypothetical protein
1824	 37.00	0	1892175..1893620	-	481	116618998	-	LEUM_1923	-	glycosyltransferase
1825	 38.42	0	1893959..1894843	-	294	116618999	-	LEUM_1926	-	hypothetical protein
1826	 40.94	0	1894937..1896829	-	630	116619000	-	LEUM_1927	-	oligopeptidase O3
1827	 39.10	0	1896935..1897870	-	311	116619001	-	LEUM_1928	-	ABC-type oligopeptide transport system, ATPase component
1828	 40.29	0	1897873..1898922	-	349	116619002	-	LEUM_1929	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
1829	 38.69	0	1898937..1899962	-	341	116619003	-	LEUM_1930	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
1830	 39.32	0	1899974..1900891	-	305	116619004	-	LEUM_1931	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
1831	 39.45	0	1900975..1902609	-	544	116619005	-	LEUM_1932	-	ABC-type oligopeptide transport system, periplasmic component
1832	 36.36	0	1902963..1903622	-	219	116619006	-	LEUM_1933	-	ABC-type amino acid transport system, permease component
1833	 36.76	0	1903633..1904274	-	213	116619007	-	LEUM_1934	-	ABC-type amino acid transport system, permease component
1834	 38.06	0	1904274..1905140	-	288	116619008	-	LEUM_1935	-	amino acid ABC transporter periplasmic protein
1835	 38.21	0	1905232..1905969	-	245	116619009	-	LEUM_1936	-	ABC-type polar amino acid transport system, ATPase component
1836	 39.17	0	1906153..1907952	-	599	116619010	-	LEUM_1937	-	ABC-type multidrug transport system, ATPase and permease component
1837	 38.83	0	1907936..1909717	-	593	116619011	-	LEUM_1938	-	ABC-type multidrug transport system, ATPase and permease component
1838	 36.81	0	1909806..1910813	-	335	116619012	-	LEUM_1939	-	hypothetical protein
1839	 43.01	+1	1910901..1911995	-	364	116619013	-	LEUM_1940	-	aspartate semialdehyde dehydrogenase
1840	 42.86	+1	1912005..1913117	-	370	116619014	-	LEUM_1941	-	alanine racemase
1841	 42.04	+1	1913509..1914174	+	221	116619015	-	LEUM_1942	-	hypothetical protein
1842	 34.88	0	1914259..1914711	-	150	116619016	-	LEUM_1943	-	BadM/Rrf2 family transcriptional regulator
1843	 40.03	0	1914765..1916930	-	721	116619017	-	LEUM_1944	-	hypothetical protein
1844	 37.71	0	1917024..1917503	-	159	116619018	-	LEUM_1945	-	SPOUT methyltransferase superfamily protein
1845	 40.18	0	1918134..1919273	-	379	116619019	-	LEUM_1946	-	trypsin-like serine protease
1846	 35.32	0	1919334..1920137	-	267	116619020	-	LEUM_1947	-	hypothetical protein
1847	 36.74	0	1920194..1921486	-	430	116619021	-	LEUM_1948	-	hypothetical protein
1848	 39.42	0	1921476..1923347	-	623	116619022	-	LEUM_1949	-	PAS/PAC sensor signal transduction histidine kinase
1849	 38.56	0	1923409..1924116	-	235	116619023	-	LEUM_1950	-	DNA-binding response regulator
1850	 41.08	0	1924225..1925205	-	326	116619024	-	LEUM_1951	-	phosphoribosylpyrophosphate synthetase
1851	 38.96	0	1925310..1925807	-	165	116619025	-	LEUM_1952	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
1852	 38.38	0	1925907..1926719	-	270	116619026	-	LEUM_1953	-	HAD superfamily hydrolase
1853	 37.43	0	1926827..1927753	-	308	116619027	-	LEUM_1954	-	3-isopropylmalate dehydrogenase
1854	 37.66	0	1927856..1928248	+	130	116619028	-	LEUM_1955	-	endoribonuclease L-PSP
1855	 41.31	+1	1928284..1929549	-	421	116619029	-	LEUM_1956	-	threonine dehydratase
1856	 41.67	+1	1929621..1930664	-	347	116619030	-	LEUM_1957	-	ketol-acid reductoisomerase
1857	 33.33	-1	1930701..1930946	-	81	116619031	-	LEUM_1958	-	acetolactate synthase small subunit
1858	 41.33	+1	1930946..1932658	-	570	116619032	-	LEUM_1959	-	acetolactate synthase, large subunit
1859	 36.36	0	1932977..1933768	+	263	116619033	-	LEUM_1960	-	ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
1860	 41.61	+1	1934181..1936622	-	813	116619034	-	LEUM_1961	-	putative phosphoketolase
1861	 40.47	0	1936809..1937537	-	242	116619035	-	LEUM_1962	-	GntR family transcriptional regulator
1862	 40.53	0	1937630..1938115	+	161	116619036	-	LEUM_1963	-	hypothetical protein
1863	 33.52	-1	1938108..1938650	+	180	116619037	-	LEUM_1964	-	hypothetical protein
1864	 40.44	0	1938789..1940252	-	487	116619038	-	LEUM_1965	-	primary replicative DNA helicase
1865	 39.96	0	1940254..1940706	-	150	116619039	-	LEUM_1966	-	50S ribosomal protein L9P
1866	 40.58	0	1940723..1942750	-	675	116619040	-	LEUM_1967	-	signal protein
1867	 43.16	+1	1942920..1943204	-	94	116619041	-	LEUM_1968	-	SSU ribosomal protein S18P
1868	 42.15	+1	1943237..1943803	-	188	116619042	-	LEUM_1969	-	single-stranded DNA-binding protein
1869	 40.74	0	1943837..1944133	-	98	116619043	-	LEUM_1970	-	ribosomal protein S6
1870	 40.11	0	1944391..1945821	-	476	116619044	-	LEUM_1971	-	dipeptidase
1871	 36.59	0	1945818..1946645	-	275	116619045	-	LEUM_1972	-	ABC-type cobalt transport system, permease component CbiQ related transporter
1872	 40.91	0	1946647..1948323	-	558	116619046	-	LEUM_1973	-	ABC-type cobalt transport system, ATPase component
1873	 40.60	0	1948355..1948918	-	187	116619047	-	LEUM_1974	-	hypothetical protein
1874	 39.02	0	1948944..1949822	-	292	116619048	-	LEUM_1975	-	hypothetical protein
1875	 39.64	0	1950157..1951965	-	602	116619049	-	LEUM_1976	-	ATP-dependent DNA helicase RecQ
1876	 32.90	-1	1952012..1952470	-	152	116619050	-	LEUM_1977	-	hypothetical protein
1877	 28.80	-2	1952875..1953426	-	183	116619051	-	LEUM_1978	-	XRE family transcriptional regulator
1878	 32.76	-1	1953910..1954782	-	290	116619052	-	LEUM_1980	-	hypothetical protein
1879	 31.60	-1	1954922..1955209	-	95	116619053	-	LEUM_1981	-	hypothetical protein
1880	 24.38	-2	1955314..1955514	-	66	116619054	-	LEUM_1982	-	transcriptional regulator
1881	 26.28	-2	1955525..1955836	-	103	116619055	-	LEUM_1983	-	hypothetical protein
1882	 35.65	0	1956169..1956513	-	114	116619056	-	LEUM_1984	-	hypothetical protein
1883	 33.33	-1	1956649..1956810	+	53	116619057	-	LEUM_1985	-	hypothetical protein
1884	 26.44	-2	1956952..1957125	-	57	116619058	-	LEUM_1986	-	hypothetical protein
1885	 36.33	0	1957148..1957981	-	277	116619059	-	LEUM_1987	-	hypothetical protein
1886	 38.82	0	1958137..1958646	-	169	116619060	-	LEUM_1988	-	Zn finger protein
1887	 24.87	-2	1958891..1959079	-	62	116619061	-	LEUM_1989	-	hypothetical protein
1888	 36.13	0	1959096..1959953	-	285	116619062	-	LEUM_1990	-	hypothetical protein
1889	 28.46	-2	1960097..1960465	-	122	116619063	-	LEUM_1991	-	hypothetical protein
1890	 42.11	+1	1960812..1961540	-	242	116619064	araD	LEUM_1992	-	L-ribulose-5-phosphate 4-epimerase
1891	 35.30	0	1961543..1962406	-	287	116619065	-	LEUM_1993	-	putative L-xylulose 5-phosphate 3-epimerase
1892	 40.38	0	1962409..1963047	-	212	116619066	ulaD	LEUM_1994	-	3-keto-L-gulonate-6-phosphate decarboxylase
1893	 34.97	0	1963058..1963363	-	101	116619067	-	LEUM_1995	-	phosphotransferase system, galactitol-specific IIB component
1894	 38.16	0	1963400..1964911	-	503	116619068	ulaA	LEUM_1996	-	ascorbate-specific PTS system enzyme IIC
1895	 35.43	0	1964925..1965401	-	158	116619069	-	LEUM_1997	-	phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
1896	 39.29	0	1965414..1966487	-	357	116619070	-	LEUM_1998	-	putative L-ascorbate 6-phosphate lactonase
1897	 33.60	-1	1966708..1968219	+	503	116619071	-	LEUM_1999	-	transcriptional antiterminator
1898	 34.18	-1	1968209..1969030	+	273	116619072	-	LEUM_2000	-	HAD superfamily hydrolase
1899	 37.41	0	1969170..1970126	+	318	116619073	-	LEUM_2001	-	hypothetical protein
1900	 34.50	-1	1970250..1971701	-	483	116619074	-	LEUM_2002	-	hypothetical protein
1901	 34.15	-1	1971694..1972185	-	163	116619075	-	LEUM_2003	-	hypothetical protein
1902	 31.70	-1	1972659..1973087	-	142	116619076	-	LEUM_2004	-	transcriptional regulator
1903	 33.13	-1	1973207..1973695	+	162	116619077	-	LEUM_2005	-	acetyltransferase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.