IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1739	 41.11	0	1794437..1798099	-	1220	116618913	-	LEUM_1824	-	DNA-directed RNA polymerase subunit beta'
1740	 41.31	+1	1798123..1801731	-	1202	116618914	-	LEUM_1825	-	DNA-directed RNA polymerase, beta subunit/140 kD subunit
1741	 40.60	0	1808184..1809242	-	352	116618915	-	LEUM_1836	-	membrane protein, putative toxin regulator
1742	 38.99	0	1809277..1810266	-	329	116618916	-	LEUM_1837	-	lactate dehydrogenase related 2-hydroxyacid dehydrogenase
1743	 39.20	0	1810263..1811456	-	397	116618917	-	LEUM_1838	-	aromatic amino acid aminotransferase
1744	 43.32	+1	1811732..1812322	-	196	116618918	-	LEUM_1839	-	guanylate kinase
1745	 41.11	0	1812439..1813839	+	466	116618919	-	LEUM_1840	-	amino acid transporter
1746	 38.17	0	1813891..1815606	-	571	116618920	-	LEUM_1841	-	septation ring formation regulator EzrA
1747	 43.46	+1	1815912..1816523	+	203	116618921	-	LEUM_1842	-	SSU ribosomal protein S4P
1748	 37.02	0	1816648..1818357	-	569	116618922	-	LEUM_1843	-	ABC-type oligopeptide transport system, periplasmic component
1749	 35.20	0	1818468..1819697	+	409	116618923	-	LEUM_1844	-	major facilitator superfamily permease
1750	 41.87	+1	1819792..1820166	+	124	116618924	-	LEUM_1845	-	hypothetical protein
1751	 40.87	0	1820173..1821459	+	428	116618925	-	LEUM_1846	-	recombination factor protein RarA
1752	 41.20	0	1821501..1821716	-	71	116618926	-	LEUM_1847	-	hypothetical protein
1753	 38.74	0	1821851..1822294	+	147	116618927	-	LEUM_1848	-	UspA family nucleotide-binding protein
1754	 39.79	0	1822351..1823790	-	479	116618928	-	LEUM_1849	-	amino acid transporter
1755	 35.02	0	1824049..1824702	-	217	116618929	-	LEUM_1850	-	membrane-associated phospholipid phosphatase
1756	 39.53	0	1825202..1826380	+	392	116618930	-	LEUM_1851	-	transcriptional regulator
1757	 41.20	0	1826427..1827659	-	410	116618931	-	LEUM_1852	-	imidazolonepropionase related amidohydrolase
1758	 37.23	0	1827687..1829303	-	538	116618932	-	LEUM_1853	-	ABC-type oligopeptide transport system, periplasmic component
1759	 33.33	-1	1829457..1829528	-	23	116618933	-	LEUM_1854	-	hypothetical protein
1760	 37.39	0	1830505..1831836	-	443	116618934	-	LEUM_1855	-	amino acid transporter
1761	 38.53	0	1831922..1832941	-	339	116618935	-	LEUM_1856	-	tryptophanyl-tRNA synthetase II
1762	 38.10	0	1833235..1834536	+	433	116618936	-	LEUM_1857	-	GTPase
1763	 35.68	0	1834886..1835995	-	369	116618937	-	LEUM_1860	-	permease
1764	 39.16	0	1835979..1837007	-	342	116618938	-	LEUM_1861	-	A/G-specific DNA-adenine glycosylase
1765	 40.28	0	1837096..1837239	+	47	116618939	-	LEUM_1862	-	hypothetical protein
1766	 39.84	0	1837324..1838721	+	465	116618940	-	LEUM_1863	-	major facilitator superfamily permease
1767	 40.10	0	1838778..1839545	+	255	116618941	-	LEUM_1864	-	pyrroline-5-carboxylate reductase
1768	 41.28	+1	1839745..1840914	-	389	116618942	-	LEUM_1866	-	NADH:flavin oxidoreductase
1769	 40.22	0	1841050..1841688	-	212	116618943	-	LEUM_1867	-	aggregation promoting factor-like surface protein
1770	 44.97	+2	1842059..1842505	-	148	116618944	-	LEUM_1868	-	F0F1-type ATP synthase, epsilon subunit
1771	 42.90	+1	1842520..1843920	-	466	116618945	-	LEUM_1869	-	F0F1 ATP synthase subunit beta
1772	 39.16	0	1844083..1844991	-	302	116618946	-	LEUM_1870	-	F0F1-type ATP synthase, gamma subunit
1773	 43.41	+1	1845006..1846523	-	505	116618947	-	LEUM_1871	-	F0F1 ATP synthase subunit alpha
1774	 35.91	0	1846536..1847078	-	180	116618948	-	LEUM_1872	-	F0F1-type ATP synthase, delta subunit
1775	 41.27	+1	1847090..1847593	-	167	116618949	-	LEUM_1873	-	F0F1-type ATP synthase, subunit b
1776	 47.37	+2	1847620..1847847	-	75	116618950	-	LEUM_1874	-	F0F1-type ATP synthase, subunit c
1777	 41.74	+1	1848020..1848745	-	241	116618951	-	LEUM_1875	-	F0F1-type ATP synthase, subunit a
1778	 41.43	+1	1849103..1850374	-	423	116618952	-	LEUM_1876	-	xanthine/uracil permease
1779	 40.76	0	1850501..1851214	-	237	116618953	-	LEUM_1877	-	phosphoglycerate mutase
1780	 45.27	+2	1851322..1851522	-	66	116618954	-	LEUM_1878	-	cold-shock DNA-binding protein family protein
1781	 36.14	0	1851701..1852378	-	225	116618955	-	LEUM_1879	-	hypothetical protein
1782	 40.81	0	1852375..1853886	-	503	116618956	-	LEUM_1880	-	major facilitator superfamily permease
1783	 36.96	0	1854007..1854696	-	229	116618957	-	LEUM_1881	-	pantothenate kinase
1784	 38.75	0	1854696..1857059	-	787	116618958	-	LEUM_1882	-	superfamily I DNA/RNA helicase
1785	 33.81	-1	1857293..1857712	+	139	116618959	-	LEUM_1883	-	transcriptional regulator
1786	 33.66	-1	1857709..1858632	+	307	116618960	-	LEUM_1884	-	Co/Zn/Cd cation transporter
1787	 39.19	0	1858757..1859746	+	329	116618961	-	LEUM_1885	-	membrane-associated phospholipid phosphatase
1788	 34.62	0	1859821..1860441	-	206	116618962	-	LEUM_1886	-	acetyltransferase
1789	 38.94	0	1860599..1860901	+	100	116618963	-	LEUM_1887	-	prebacteriocin
1790	 32.43	-1	1861105..1861545	-	146	116618964	-	LEUM_1888	-	hypothetical protein
1791	 37.91	0	1861812..1862423	-	203	116618965	-	LEUM_1889	-	XRE family transcriptional regulator
1792	 37.69	0	1862574..1863698	-	374	116618966	-	LEUM_1890	-	proline dipeptidase
1793	 38.65	0	1863718..1866465	-	915	116618967	-	LEUM_1891	-	hypothetical protein
1794	 32.36	-1	1866589..1867206	+	205	116618968	-	LEUM_1892	-	transcriptional regulator
1795	 34.65	0	1867351..1868712	-	453	116618969	-	LEUM_1893	-	GntR family transcriptional regulator
1796	 39.51	0	1868911..1869849	+	312	116618970	-	LEUM_1894	-	hypothetical protein
1797	 37.23	0	1869911..1871527	-	538	116618971	-	LEUM_1895	-	subtilisin-like serine protease
1798	 35.52	0	1871931..1872479	+	182	116618972	-	LEUM_1896	-	acetyltransferase
1799	 33.83	-1	1872822..1873430	+	202	116618973	-	LEUM_1897	-	TetR family transcriptional regulator
1800	 34.13	-1	1873609..1874112	+	167	116618974	-	LEUM_1898	-	topology modulation protein
1801	 35.66	0	1874207..1874722	+	171	116618975	-	LEUM_1899	-	hypothetical protein
1802	 36.15	0	1874773..1875942	-	389	116618976	-	LEUM_1900	-	thymidine kinase
1803	 38.89	0	1876252..1876791	+	179	116618977	-	LEUM_1901	-	acetyltransferase
1804	 35.67	0	1876871..1877212	+	113	116618978	-	LEUM_1902	-	hypothetical protein
1805	 33.33	-1	1877311..1877811	+	166	116618979	-	LEUM_1903	-	TPR repeat-containing protein
1806	 31.77	-1	1877946..1878521	+	191	116618980	-	LEUM_1904	-	hypothetical protein
1807	 31.37	-1	1878789..1878941	+	50	116618981	-	LEUM_1905	-	hypothetical protein
1808	 31.62	-1	1879054..1879287	+	77	116618982	-	LEUM_1906	-	hypothetical protein
1809	 34.06	-1	1879371..1879646	+	91	116618983	-	LEUM_1907	-	hypothetical protein
1810	 32.37	-1	1879716..1879922	+	68	116618984	-	LEUM_1908	-	hypothetical protein
1811	 36.48	0	1879970..1880128	+	52	116618985	-	LEUM_1909	-	hypothetical protein
1812	 35.42	0	1880191..1880430	+	79	116618986	-	LEUM_1910	-	hypothetical protein
1813	 30.12	-2	1880539..1880880	+	113	116618987	-	LEUM_1911	-	hypothetical protein
1814	 32.34	-1	1881017..1881823	-	268	116618988	-	LEUM_1912	-	mRNA degradation ribonuclease J1/J2enzyme
1815	 33.33	-1	1882225..1882596	+	123	116618989	-	LEUM_1913	-	hypothetical protein
1816	 41.04	0	1883091..1884647	-	518	116618990	-	LEUM_1915	-	ABC transporter ATPase
1817	 35.34	0	1884668..1885615	-	315	116618991	-	LEUM_1916	-	XRE family transcriptional regulator
1818	 34.50	-1	1885729..1887009	+	426	116618992	-	LEUM_1917	-	major facilitator superfamily permease
1819	 40.24	0	1887015..1887347	+	110	116618993	-	LEUM_1918	-	lactoylglutathione lyase related lyase
1820	 43.30	+1	1887402..1888454	-	350	116618994	-	LEUM_1919	-	alcohol dehydrogenase
1821	 40.49	0	1888625..1889896	-	423	116618995	-	LEUM_1920	-	major facilitator superfamily permease
1822	 41.79	+1	1890045..1891262	-	405	116618996	-	LEUM_1921	-	phosphoglycerate kinase
1823	 35.98	0	1891348..1892178	-	276	116618997	-	LEUM_1922	-	hypothetical protein
1824	 37.00	0	1892175..1893620	-	481	116618998	-	LEUM_1923	-	glycosyltransferase
1825	 38.42	0	1893959..1894843	-	294	116618999	-	LEUM_1926	-	hypothetical protein
1826	 40.94	0	1894937..1896829	-	630	116619000	-	LEUM_1927	-	oligopeptidase O3
1827	 39.10	0	1896935..1897870	-	311	116619001	-	LEUM_1928	-	ABC-type oligopeptide transport system, ATPase component
1828	 40.29	0	1897873..1898922	-	349	116619002	-	LEUM_1929	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
1829	 38.69	0	1898937..1899962	-	341	116619003	-	LEUM_1930	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
1830	 39.32	0	1899974..1900891	-	305	116619004	-	LEUM_1931	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
1831	 39.45	0	1900975..1902609	-	544	116619005	-	LEUM_1932	-	ABC-type oligopeptide transport system, periplasmic component
1832	 36.36	0	1902963..1903622	-	219	116619006	-	LEUM_1933	-	ABC-type amino acid transport system, permease component
1833	 36.76	0	1903633..1904274	-	213	116619007	-	LEUM_1934	-	ABC-type amino acid transport system, permease component
1834	 38.06	0	1904274..1905140	-	288	116619008	-	LEUM_1935	-	amino acid ABC transporter periplasmic protein
1835	 38.21	0	1905232..1905969	-	245	116619009	-	LEUM_1936	-	ABC-type polar amino acid transport system, ATPase component
1836	 39.17	0	1906153..1907952	-	599	116619010	-	LEUM_1937	-	ABC-type multidrug transport system, ATPase and permease component
1837	 38.83	0	1907936..1909717	-	593	116619011	-	LEUM_1938	-	ABC-type multidrug transport system, ATPase and permease component
1838	 36.81	0	1909806..1910813	-	335	116619012	-	LEUM_1939	-	hypothetical protein
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.