IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1707	 44.21	+1	1762920..1764050	-	376	116618881	-	LEUM_1792	-	membrane protein, putative toxin regulator
1708	 30.72	-2	1764482..1765477	+	331	116618882	-	LEUM_1793	-	permease
1709	 39.50	0	1765512..1767812	-	766	116618883	-	LEUM_1794	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1710	 36.80	0	1767980..1768873	-	297	116618884	-	LEUM_1795	-	5,10-methylenetetrahydrofolate reductase
1711	 35.77	0	1768894..1769016	-	40	116618885	-	LEUM_1796	-	hypothetical protein
1712	 38.08	0	1769373..1770089	-	238	116618886	-	LEUM_1797	-	glutamine amidotransferase
1713	 36.47	0	1770098..1771693	-	531	116618887	-	LEUM_1798	-	ABC-type oligopeptide transport system, periplasmic component
1714	 39.60	0	1771807..1773099	-	430	116618888	-	LEUM_1799	-	O-acetylhomoserine sulfhydrylase
1715	 39.39	0	1773150..1773248	-	32	116618889	-	LEUM_1800	-	hypothetical protein
1716	 39.10	0	1773293..1774420	-	375	116618890	-	LEUM_1801	-	methionine synthase II (cobalamin-independent)
1717	 37.32	0	1774845..1775321	-	158	116618891	-	LEUM_1802	-	S-ribosylhomocysteinase
1718	 37.15	0	1775523..1776650	-	375	116618892	-	LEUM_1803	-	hypothetical protein
1719	 40.44	0	1776702..1777841	-	379	116618893	-	LEUM_1804	-	cystathionine beta-lyase
1720	 40.63	0	1777838..1778947	-	369	116618894	-	LEUM_1805	-	cysteine synthase / cystathionine gamma-synthase
1721	 37.36	0	1778944..1779861	-	305	116618895	-	LEUM_1806	-	homoserine O-succinyltransferase
1722	 38.23	0	1780370..1780696	+	108	116618896	-	LEUM_1807	-	Thiol-disulfide isomerase and thioredoxin
1723	 39.39	0	1780790..1781647	-	285	116618897	-	LEUM_1808	-	trypsin-like serine protease
1724	 36.72	0	1781739..1783037	-	432	116618898	-	LEUM_1809	-	Signal transduction histidine kinase
1725	 37.32	0	1783018..1783719	-	233	116618899	-	LEUM_1810	-	DNA-binding response regulator
1726	 42.35	+1	1783800..1784165	-	121	116618900	-	LEUM_1811	-	toxin-antitoxin addiction module toxin component MazF (an endoRNAse)
1727	 40.91	0	1784204..1785325	-	373	116618901	-	LEUM_1812	-	alanine racemase
1728	 41.85	+1	1785322..1785732	-	136	116618902	-	LEUM_1813	-	phosphopantetheinyl transferase (holo-ACP synthase)
1729	 36.52	0	1785803..1787089	-	428	116618903	-	LEUM_1814	-	D-alanyl transfer protein
1730	 33.33	-1	1787094..1787330	-	78	116618904	-	LEUM_1815	-	D-alanyl carrier protein
1731	 37.39	0	1787401..1788609	-	402	116618905	-	LEUM_1816	-	D-alanyl transfer protein
1732	 37.78	0	1788602..1790131	-	509	116618906	-	LEUM_1817	-	D-alanine-activating enzyme
1733	 29.79	-2	1790146..1790286	-	46	116618907	-	LEUM_1818	-	D-Ala-teichoic acid biosynthesis protein (putative)
1734	 35.17	0	1790432..1791628	+	398	116618908	-	LEUM_1819	-	cellobiose-specific PTS system IIC component
1735	 34.53	0	1791618..1792454	+	278	116618909	-	LEUM_1820	-	alpha/beta hydrolase superfamily protein
1736	 35.33	0	1792477..1793028	-	183	116618910	-	LEUM_1821	-	ComX
1737	 41.07	0	1793067..1793816	-	249	116618911	-	LEUM_1822	-	rRNA methylase
1738	 36.20	0	1793813..1794196	-	127	116618912	-	LEUM_1823	-	ribonuclease III family protein
1739	 41.11	0	1794437..1798099	-	1220	116618913	-	LEUM_1824	-	DNA-directed RNA polymerase subunit beta'
1740	 41.31	+1	1798123..1801731	-	1202	116618914	-	LEUM_1825	-	DNA-directed RNA polymerase, beta subunit/140 kD subunit
1741	 40.60	0	1808184..1809242	-	352	116618915	-	LEUM_1836	-	membrane protein, putative toxin regulator
1742	 38.99	0	1809277..1810266	-	329	116618916	-	LEUM_1837	-	lactate dehydrogenase related 2-hydroxyacid dehydrogenase
1743	 39.20	0	1810263..1811456	-	397	116618917	-	LEUM_1838	-	aromatic amino acid aminotransferase
1744	 43.32	+1	1811732..1812322	-	196	116618918	-	LEUM_1839	-	guanylate kinase
1745	 41.11	0	1812439..1813839	+	466	116618919	-	LEUM_1840	-	amino acid transporter
1746	 38.17	0	1813891..1815606	-	571	116618920	-	LEUM_1841	-	septation ring formation regulator EzrA
1747	 43.46	+1	1815912..1816523	+	203	116618921	-	LEUM_1842	-	SSU ribosomal protein S4P
1748	 37.02	0	1816648..1818357	-	569	116618922	-	LEUM_1843	-	ABC-type oligopeptide transport system, periplasmic component
1749	 35.20	0	1818468..1819697	+	409	116618923	-	LEUM_1844	-	major facilitator superfamily permease
1750	 41.87	+1	1819792..1820166	+	124	116618924	-	LEUM_1845	-	hypothetical protein
1751	 40.87	0	1820173..1821459	+	428	116618925	-	LEUM_1846	-	recombination factor protein RarA
1752	 41.20	0	1821501..1821716	-	71	116618926	-	LEUM_1847	-	hypothetical protein
1753	 38.74	0	1821851..1822294	+	147	116618927	-	LEUM_1848	-	UspA family nucleotide-binding protein
1754	 39.79	0	1822351..1823790	-	479	116618928	-	LEUM_1849	-	amino acid transporter
1755	 35.02	0	1824049..1824702	-	217	116618929	-	LEUM_1850	-	membrane-associated phospholipid phosphatase
1756	 39.53	0	1825202..1826380	+	392	116618930	-	LEUM_1851	-	transcriptional regulator
1757	 41.20	0	1826427..1827659	-	410	116618931	-	LEUM_1852	-	imidazolonepropionase related amidohydrolase
1758	 37.23	0	1827687..1829303	-	538	116618932	-	LEUM_1853	-	ABC-type oligopeptide transport system, periplasmic component
1759	 33.33	-1	1829457..1829528	-	23	116618933	-	LEUM_1854	-	hypothetical protein
1760	 37.39	0	1830505..1831836	-	443	116618934	-	LEUM_1855	-	amino acid transporter
1761	 38.53	0	1831922..1832941	-	339	116618935	-	LEUM_1856	-	tryptophanyl-tRNA synthetase II
1762	 38.10	0	1833235..1834536	+	433	116618936	-	LEUM_1857	-	GTPase
1763	 35.68	0	1834886..1835995	-	369	116618937	-	LEUM_1860	-	permease
1764	 39.16	0	1835979..1837007	-	342	116618938	-	LEUM_1861	-	A/G-specific DNA-adenine glycosylase
1765	 40.28	0	1837096..1837239	+	47	116618939	-	LEUM_1862	-	hypothetical protein
1766	 39.84	0	1837324..1838721	+	465	116618940	-	LEUM_1863	-	major facilitator superfamily permease
1767	 40.10	0	1838778..1839545	+	255	116618941	-	LEUM_1864	-	pyrroline-5-carboxylate reductase
1768	 41.28	+1	1839745..1840914	-	389	116618942	-	LEUM_1866	-	NADH:flavin oxidoreductase
1769	 40.22	0	1841050..1841688	-	212	116618943	-	LEUM_1867	-	aggregation promoting factor-like surface protein
1770	 44.97	+2	1842059..1842505	-	148	116618944	-	LEUM_1868	-	F0F1-type ATP synthase, epsilon subunit
1771	 42.90	+1	1842520..1843920	-	466	116618945	-	LEUM_1869	-	F0F1 ATP synthase subunit beta
1772	 39.16	0	1844083..1844991	-	302	116618946	-	LEUM_1870	-	F0F1-type ATP synthase, gamma subunit
1773	 43.41	+1	1845006..1846523	-	505	116618947	-	LEUM_1871	-	F0F1 ATP synthase subunit alpha
1774	 35.91	0	1846536..1847078	-	180	116618948	-	LEUM_1872	-	F0F1-type ATP synthase, delta subunit
1775	 41.27	+1	1847090..1847593	-	167	116618949	-	LEUM_1873	-	F0F1-type ATP synthase, subunit b
1776	 47.37	+2	1847620..1847847	-	75	116618950	-	LEUM_1874	-	F0F1-type ATP synthase, subunit c
1777	 41.74	+1	1848020..1848745	-	241	116618951	-	LEUM_1875	-	F0F1-type ATP synthase, subunit a
1778	 41.43	+1	1849103..1850374	-	423	116618952	-	LEUM_1876	-	xanthine/uracil permease
1779	 40.76	0	1850501..1851214	-	237	116618953	-	LEUM_1877	-	phosphoglycerate mutase
1780	 45.27	+2	1851322..1851522	-	66	116618954	-	LEUM_1878	-	cold-shock DNA-binding protein family protein
1781	 36.14	0	1851701..1852378	-	225	116618955	-	LEUM_1879	-	hypothetical protein
1782	 40.81	0	1852375..1853886	-	503	116618956	-	LEUM_1880	-	major facilitator superfamily permease
1783	 36.96	0	1854007..1854696	-	229	116618957	-	LEUM_1881	-	pantothenate kinase
1784	 38.75	0	1854696..1857059	-	787	116618958	-	LEUM_1882	-	superfamily I DNA/RNA helicase
1785	 33.81	-1	1857293..1857712	+	139	116618959	-	LEUM_1883	-	transcriptional regulator
1786	 33.66	-1	1857709..1858632	+	307	116618960	-	LEUM_1884	-	Co/Zn/Cd cation transporter
1787	 39.19	0	1858757..1859746	+	329	116618961	-	LEUM_1885	-	membrane-associated phospholipid phosphatase
1788	 34.62	0	1859821..1860441	-	206	116618962	-	LEUM_1886	-	acetyltransferase
1789	 38.94	0	1860599..1860901	+	100	116618963	-	LEUM_1887	-	prebacteriocin
1790	 32.43	-1	1861105..1861545	-	146	116618964	-	LEUM_1888	-	hypothetical protein
1791	 37.91	0	1861812..1862423	-	203	116618965	-	LEUM_1889	-	XRE family transcriptional regulator
1792	 37.69	0	1862574..1863698	-	374	116618966	-	LEUM_1890	-	proline dipeptidase
1793	 38.65	0	1863718..1866465	-	915	116618967	-	LEUM_1891	-	hypothetical protein
1794	 32.36	-1	1866589..1867206	+	205	116618968	-	LEUM_1892	-	transcriptional regulator
1795	 34.65	0	1867351..1868712	-	453	116618969	-	LEUM_1893	-	GntR family transcriptional regulator
1796	 39.51	0	1868911..1869849	+	312	116618970	-	LEUM_1894	-	hypothetical protein
1797	 37.23	0	1869911..1871527	-	538	116618971	-	LEUM_1895	-	subtilisin-like serine protease
1798	 35.52	0	1871931..1872479	+	182	116618972	-	LEUM_1896	-	acetyltransferase
1799	 33.83	-1	1872822..1873430	+	202	116618973	-	LEUM_1897	-	TetR family transcriptional regulator
1800	 34.13	-1	1873609..1874112	+	167	116618974	-	LEUM_1898	-	topology modulation protein
1801	 35.66	0	1874207..1874722	+	171	116618975	-	LEUM_1899	-	hypothetical protein
1802	 36.15	0	1874773..1875942	-	389	116618976	-	LEUM_1900	-	thymidine kinase
1803	 38.89	0	1876252..1876791	+	179	116618977	-	LEUM_1901	-	acetyltransferase
1804	 35.67	0	1876871..1877212	+	113	116618978	-	LEUM_1902	-	hypothetical protein
1805	 33.33	-1	1877311..1877811	+	166	116618979	-	LEUM_1903	-	TPR repeat-containing protein
1806	 31.77	-1	1877946..1878521	+	191	116618980	-	LEUM_1904	-	hypothetical protein
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.