IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1625	 33.59	-1	1682867..1683250	-	127	116618799	-	LEUM_1710	-	RNA-binding protein
1626	 38.95	0	1683323..1683910	-	195	116618800	-	LEUM_1711	-	peptidyl-prolyl cis-trans isomerase
1627	 38.03	0	1683950..1684162	-	70	116618801	-	LEUM_1712	-	DNA-directed RNA polymerase, subunit K/omega
1628	 40.20	0	1684173..1684769	-	198	116618802	-	LEUM_1713	-	guanylate kinase
1629	 33.94	-1	1685026..1685352	+	108	116618803	-	LEUM_1714	-	hypothetical protein
1630	 34.91	0	1685403..1686479	-	358	116618804	-	LEUM_1715	-	hypothetical protein
1631	 37.04	0	1686543..1686893	-	116	116618805	-	LEUM_1716	-	hypothetical protein
1632	 39.20	0	1687049..1689451	-	800	116618806	-	LEUM_1717	-	MutS family ATPase
1633	 36.78	0	1689510..1690031	-	173	116618807	-	LEUM_1718	-	membrane ancor connecting MutS2 with cell-division Z-ring
1634	 34.86	0	1690028..1690420	-	130	116618808	-	LEUM_1719	-	stimulator of FtsZ polymerization and component of cell-division Z-ring
1635	 29.37	-2	1690528..1690905	-	125	116618809	-	LEUM_1720	-	hypothetical protein
1636	 38.71	0	1691084..1691995	+	303	116618810	-	LEUM_1721	-	ribonuclease HIII
1637	 38.23	0	1692013..1692543	-	176	116618811	-	LEUM_1722	-	hypothetical protein
1638	 38.42	0	1692546..1692938	-	130	116618812	-	LEUM_1723	-	methyl-accepting chemotaxis-like protein
1639	 40.91	0	1693083..1694639	-	518	116618813	-	LEUM_1724	-	HD superfamily hydrolase
1640	 37.20	0	1694775..1695239	-	154	116618814	smpB	LEUM_1725	-	SsrA-binding protein
1641	 40.77	0	1695251..1697575	-	774	116618815	-	LEUM_1726	-	exoribonuclease R
1642	 39.66	0	1697681..1697917	-	78	116618816	-	LEUM_1727	-	preprotein translocase subunit SecG
1643	 39.92	0	1697995..1698768	-	257	116618817	-	LEUM_1728	-	rRNA methylase
1644	 36.36	0	1698828..1699751	-	307	116618818	-	LEUM_1729	-	preprotein translocase subunit YidC
1645	 38.46	0	1699823..1700095	-	90	116618819	-	LEUM_1730	-	acylphosphatase
1646	 39.24	0	1700082..1701182	-	366	116618820	-	LEUM_1731	-	Signal transduction histidine kinase
1647	 36.67	0	1701195..1701884	-	229	116618821	-	LEUM_1732	-	DNA-binding response regulator
1648	 35.71	0	1701981..1702526	-	181	116618822	-	LEUM_1733	-	metal-binding protein
1649	 38.45	0	1702528..1703700	-	390	116618823	-	LEUM_1734	-	hypothetical protein
1650	 34.13	-1	1703700..1704452	-	250	116618824	-	LEUM_1735	-	SAM-dependent methyltransferase
1651	 40.53	0	1704540..1704914	-	124	116618825	-	LEUM_1736	-	Iojap family protein
1652	 37.26	0	1704918..1705502	-	194	116618826	-	LEUM_1737	-	HD superfamily NAD metabolism hydrolase
1653	 39.28	0	1705495..1706133	-	212	116618827	-	LEUM_1738	-	nicotinate-nucleotide adenylyltransferase
1654	 34.94	0	1706144..1706455	-	103	116618828	-	LEUM_1739	-	RNA-binding protein
1655	 39.47	0	1706455..1707594	-	379	116618829	-	LEUM_1740	-	GTP-binding protein YqeH
1656	 40.04	0	1707584..1708120	-	178	116618830	-	LEUM_1741	-	HAD superfamily hydrolase
1657	 39.16	0	1708196..1708864	-	222	116618831	-	LEUM_1742	-	hypothetical protein
1658	 37.70	0	1708971..1709474	-	167	116618832	-	LEUM_1743	-	periplasmic/secreted protein
1659	 38.56	0	1709581..1710231	-	216	116618833	-	LEUM_1744	-	putative NADH-flavin reductase
1660	 38.12	0	1710256..1710861	-	201	116618834	-	LEUM_1745	-	oxidoreductase
1661	 34.52	0	1711000..1711419	+	139	116618835	-	LEUM_1746	-	BadM/Rrf2 family transcriptional regulator
1662	 37.89	0	1711476..1716059	-	1527	116618836	-	LEUM_1747	-	YG repeat-containing glycosyl hydrolase family 70 protein
1663	 40.43	0	1716481..1720707	-	1408	116618837	-	LEUM_1748	-	hypothetical protein
1664	 32.39	-1	1720708..1720920	-	70	116618838	-	LEUM_1749	-	XRE family-like protein
1665	 35.64	0	1721073..1721462	+	129	116618839	-	LEUM_1750	-	XRE family transcriptional regulator
1666	 33.33	-1	1721469..1721876	+	135	116618840	-	LEUM_1751	-	hypothetical protein
1667	 37.89	0	1721932..1726476	-	1514	116618841	-	LEUM_1752	-	glycosyl hydrolase
1668	 31.98	-1	1726777..1726998	+	73	116618842	-	LEUM_1753	-	XRE family transcriptional regulator
1669	 30.71	-2	1727052..1727660	+	202	116618843	-	LEUM_1754	-	XRE family transcriptional regulator
1670	 40.68	0	1727692..1728930	-	412	116618844	-	LEUM_1755	-	membrane protein, putative toxin regulator
1671	 39.86	0	1729091..1730086	-	331	116618845	-	LEUM_1756	-	D-lactate dehydrogenase, LdhA
1672	 35.24	0	1730273..1731163	-	296	116618846	-	LEUM_1757	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1673	 34.59	0	1731261..1731899	-	212	116618847	-	LEUM_1758	-	hypothetical protein
1674	 35.59	0	1731896..1732339	-	147	116618848	-	LEUM_1759	-	hypothetical protein
1675	 40.88	0	1732473..1733810	+	445	116618849	-	LEUM_1760	-	aminopeptidase C
1676	 32.71	-1	1733836..1734639	+	267	116618850	-	LEUM_1761	-	hypothetical protein
1677	 41.36	+1	1734716..1736335	-	539	116618851	-	LEUM_1762	-	chaperonin GroEL
1678	 42.11	+1	1736364..1736648	-	94	116618852	-	LEUM_1763	-	Co-chaperonin GroES (HSP10)
1679	 39.21	0	1736772..1737605	-	277	116618853	-	LEUM_1764	-	hypothetical protein
1680	 36.67	0	1737635..1737994	-	119	116618854	-	LEUM_1765	-	hypothetical protein
1681	 40.55	0	1738073..1738987	-	304	116618855	-	LEUM_1766	-	mannose-specific PTS system component IID
1682	 44.49	+1	1739002..1739808	-	268	116618856	-	LEUM_1767	-	mannose-specific PTS system component IIC
1683	 40.32	0	1739848..1740792	-	314	116618857	-	LEUM_1768	-	phosphotransferase system, mannose/fructose-specific component IIA
1684	 38.65	0	1741045..1742004	-	319	116618858	-	LEUM_1769	-	phosphomannose isomerase
1685	 40.05	0	1742039..1742782	-	247	116618859	-	LEUM_1770	-	nitroreductase
1686	 39.34	0	1742875..1743357	+	160	116618860	-	LEUM_1771	-	hypothetical protein
1687	 37.73	0	1743367..1744185	-	272	116618861	-	LEUM_1772	-	HAD superfamily hydrolase
1688	 39.11	0	1744252..1745289	-	345	116618862	-	LEUM_1773	-	peptidoglycan interpeptide bridge formation protein
1689	 39.17	0	1745296..1745946	-	216	116618863	-	LEUM_1774	-	redox-sensing transcriptional repressor Rex
1690	 39.82	0	1746044..1747060	-	338	116618864	-	LEUM_1775	-	O-sialoglycoprotein endopeptidase
1691	 37.47	0	1747053..1747463	-	136	116618865	-	LEUM_1776	-	acetyltransferase
1692	 40.50	0	1747441..1747998	-	185	116618866	-	LEUM_1777	-	acetyltransferase
1693	 39.66	0	1747982..1748692	-	236	116618867	-	LEUM_1778	-	metal-dependent protease-like protein, putative molecular chaperone
1694	 40.62	0	1748808..1750523	-	571	116618868	-	LEUM_1779	-	phosphoenolpyruvate--protein phosphotransferase
1695	 40.74	0	1750525..1750794	-	89	116618869	-	LEUM_1780	-	phosphocarrier protein HPr
1696	 37.69	0	1751054..1752544	-	496	116618870	-	LEUM_1781	-	Zn-dependent carboxypeptidase
1697	 41.91	+1	1752695..1753708	-	337	116618871	-	LEUM_1782	-	translation factor SUA5
1698	 38.77	0	1753705..1754697	-	330	116618872	-	LEUM_1783	-	methylase of polypeptide chain release factor
1699	 41.36	+1	1754694..1755764	-	356	116618873	-	LEUM_1784	-	peptide chain release factor 1
1700	 40.88	0	1755854..1756489	-	211	116618874	-	LEUM_1785	-	thymidine kinase
1701	 38.27	0	1756671..1757582	-	303	116618875	-	LEUM_1786	-	YG repeat-containing cell wall-associated hydrolase
1702	 38.35	0	1757689..1758306	-	205	116618876	-	LEUM_1787	-	xanthosine triphosphate pyrophosphatase
1703	 39.37	0	1758554..1759912	+	452	116618877	-	LEUM_1788	-	UDP-N-acetylmuramyl tripeptide synthase
1704	 37.84	0	1759912..1760643	+	243	116618878	-	LEUM_1789	-	glutamine amidotransferase
1705	 32.18	-1	1760686..1760859	-	57	116618879	-	LEUM_1790	-	hypothetical protein
1706	 39.46	0	1760946..1762790	-	614	116618880	-	LEUM_1791	-	amino acid transporter
1707	 44.21	+1	1762920..1764050	-	376	116618881	-	LEUM_1792	-	membrane protein, putative toxin regulator
1708	 30.72	-2	1764482..1765477	+	331	116618882	-	LEUM_1793	-	permease
1709	 39.50	0	1765512..1767812	-	766	116618883	-	LEUM_1794	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1710	 36.80	0	1767980..1768873	-	297	116618884	-	LEUM_1795	-	5,10-methylenetetrahydrofolate reductase
1711	 35.77	0	1768894..1769016	-	40	116618885	-	LEUM_1796	-	hypothetical protein
1712	 38.08	0	1769373..1770089	-	238	116618886	-	LEUM_1797	-	glutamine amidotransferase
1713	 36.47	0	1770098..1771693	-	531	116618887	-	LEUM_1798	-	ABC-type oligopeptide transport system, periplasmic component
1714	 39.60	0	1771807..1773099	-	430	116618888	-	LEUM_1799	-	O-acetylhomoserine sulfhydrylase
1715	 39.39	0	1773150..1773248	-	32	116618889	-	LEUM_1800	-	hypothetical protein
1716	 39.10	0	1773293..1774420	-	375	116618890	-	LEUM_1801	-	methionine synthase II (cobalamin-independent)
1717	 37.32	0	1774845..1775321	-	158	116618891	-	LEUM_1802	-	S-ribosylhomocysteinase
1718	 37.15	0	1775523..1776650	-	375	116618892	-	LEUM_1803	-	hypothetical protein
1719	 40.44	0	1776702..1777841	-	379	116618893	-	LEUM_1804	-	cystathionine beta-lyase
1720	 40.63	0	1777838..1778947	-	369	116618894	-	LEUM_1805	-	cysteine synthase / cystathionine gamma-synthase
1721	 37.36	0	1778944..1779861	-	305	116618895	-	LEUM_1806	-	homoserine O-succinyltransferase
1722	 38.23	0	1780370..1780696	+	108	116618896	-	LEUM_1807	-	Thiol-disulfide isomerase and thioredoxin
1723	 39.39	0	1780790..1781647	-	285	116618897	-	LEUM_1808	-	trypsin-like serine protease
1724	 36.72	0	1781739..1783037	-	432	116618898	-	LEUM_1809	-	Signal transduction histidine kinase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.