IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1553	 35.47	0	1627910..1628143	-	77	116618727	-	LEUM_1633	-	hypothetical protein
1554	 36.05	0	1628143..1628289	-	48	116618728	-	LEUM_1634	-	hypothetical protein
1555	 39.12	0	1628302..1632672	-	1456	116618729	-	LEUM_1635	-	hypothetical protein
1556	 36.21	0	1632686..1633798	-	370	116618730	-	LEUM_1636	-	hypothetical protein
1557	 39.34	0	1633864..1639074	-	1736	116618731	-	LEUM_1637	-	SLT domain-containing protein
1558	 34.44	-1	1639075..1639254	-	59	116618732	-	LEUM_1638	-	hypothetical protein
1559	 34.57	0	1639293..1639697	-	134	116618733	-	LEUM_1639	-	hypothetical protein
1560	 41.51	+1	1640038..1640673	-	211	116618734	-	LEUM_1640	-	hypothetical protein
1561	 34.13	-1	1640677..1641051	-	124	116618735	-	LEUM_1641	-	hypothetical protein
1562	 36.21	0	1641051..1641467	-	138	116618736	-	LEUM_1642	-	hypothetical protein
1563	 37.10	0	1641457..1641828	-	123	116618737	-	LEUM_1643	-	hypothetical protein
1564	 37.24	0	1641821..1642153	-	110	116618738	-	LEUM_1644	-	hypothetical protein
1565	 40.55	0	1642164..1643327	-	387	116618739	-	LEUM_1645	-	phage phi-C31 gp36 major capsid-like protein
1566	 37.68	0	1643338..1644027	-	229	116618740	-	LEUM_1646	-	protease subunit of ATP-dependent Clp protease
1567	 39.90	0	1644024..1645166	-	380	116618741	-	LEUM_1647	-	hypothetical protein
1568	 30.16	-2	1645171..1645359	-	62	116618742	-	LEUM_1648	-	hypothetical protein
1569	 35.73	0	1645356..1647236	-	626	116618743	-	LEUM_1649	-	Phage terminase-like protein, large subunit
1570	 37.23	0	1647223..1647786	-	187	116618744	-	LEUM_1650	-	Phage terminase, small subunit
1571	 33.91	-1	1648035..1648208	-	57	116618745	-	LEUM_1651	-	hypothetical protein
1572	 39.46	0	1648302..1648742	-	146	116618746	-	LEUM_1652	-	restriction endonuclease
1573	 41.10	0	1648838..1649146	-	102	116618747	-	LEUM_1653	-	hypothetical protein
1574	 38.81	0	1649213..1649413	-	66	116618748	-	LEUM_1654	-	hypothetical protein
1575	 33.55	-1	1649472..1649933	-	153	116618749	-	LEUM_1655	-	hypothetical protein
1576	 30.00	-2	1650027..1650716	-	229	116618750	-	LEUM_1656	-	hypothetical protein
1577	 32.39	-1	1650780..1651097	-	105	116618751	-	LEUM_1657	-	hypothetical protein
1578	 43.43	+1	1651144..1651341	-	65	116618752	-	LEUM_1658	-	hypothetical protein
1579	 36.08	0	1651402..1651656	-	84	116618753	-	LEUM_1659	-	hypothetical protein
1580	 28.57	-2	1652070..1652195	-	41	116618754	-	LEUM_1660	-	hypothetical protein
1581	 32.12	-1	1652192..1652770	-	192	116618755	-	LEUM_1661	-	hypothetical protein
1582	 40.90	0	1652889..1653311	-	140	116618756	-	LEUM_1662	-	hypothetical protein
1583	 34.52	0	1653567..1653734	-	55	116618757	-	LEUM_1663	-	hypothetical protein
1584	 39.23	0	1653731..1654171	-	146	116618758	-	LEUM_1664	-	hypothetical protein
1585	 33.08	-1	1654174..1654572	-	132	116618759	-	LEUM_1665	-	hypothetical protein
1586	 38.74	0	1654565..1654786	-	73	116618760	-	LEUM_1666	-	hypothetical protein
1587	 33.87	-1	1654906..1655091	-	61	116618761	-	LEUM_1667	-	hypothetical protein
1588	 42.84	+1	1655094..1655798	-	234	116618762	-	LEUM_1668	-	hypothetical protein
1589	 35.59	0	1655798..1655974	-	58	116618763	-	LEUM_1669	-	hypothetical protein
1590	 42.00	+1	1655984..1656133	-	49	116618764	-	LEUM_1670	-	hypothetical protein
1591	 41.86	+1	1656130..1656903	-	257	116618765	-	LEUM_1671	-	DNA replication protein
1592	 35.37	0	1656900..1657733	-	277	116618766	-	LEUM_1672	-	hypothetical protein
1593	 37.29	0	1657873..1658529	-	218	116618767	-	LEUM_1673	-	hypothetical protein
1594	 40.84	0	1658508..1659440	-	310	116618768	-	LEUM_1674	-	recombinational DNA repair protein (RecE pathway)
1595	 38.05	0	1659443..1659781	-	112	116618769	-	LEUM_1675	-	hypothetical protein
1596	 31.88	-1	1659874..1660080	-	68	116618770	-	LEUM_1676	-	XRE family transcriptional regulator
1597	 35.53	0	1660206..1660433	+	75	116618771	-	LEUM_1677	-	hypothetical protein
1598	 26.19	-2	1660420..1660587	-	55	116618772	-	LEUM_1678	-	hypothetical protein
1599	 46.67	+2	1660599..1660763	-	54	116618773	-	LEUM_1679	-	hypothetical protein
1600	 38.89	0	1660775..1661494	-	239	116618774	-	LEUM_1680	-	phage-encoded protein
1601	 34.16	-1	1661500..1661742	-	80	116618775	-	LEUM_1681	-	hypothetical protein
1602	 30.48	-2	1661811..1662020	+	69	116618776	-	LEUM_1682	-	hypothetical protein
1603	 35.37	0	1661998..1662144	-	48	116618777	-	LEUM_1683	-	hypothetical protein
1604	 42.13	+1	1662161..1662376	-	71	116618778	-	LEUM_1684	-	hypothetical protein
1605	 35.67	0	1662426..1662767	+	113	116618779	-	LEUM_1685	-	hypothetical protein
1606	 32.51	-1	1662824..1663066	-	80	116618780	-	LEUM_1686	-	hypothetical protein
1607	 35.12	0	1663352..1663687	+	111	116618781	-	LEUM_1687	-	XRE family transcriptional regulator
1608	 35.48	0	1663700..1663978	+	92	116618782	-	LEUM_1688	-	thimet peptidase
1609	 37.05	0	1664045..1664797	+	250	116618783	-	LEUM_1689	-	hypothetical protein
1610	 35.34	0	1664933..1665979	+	348	116618784	-	LEUM_1690	-	integrase
1611	 35.13	0	1666159..1666548	-	129	116618785	-	LEUM_1691	-	hypothetical protein
1612	 42.86	+1	1666755..1666838	-	27	116618786	-	LEUM_1692	-	hypothetical protein
1613	 39.74	0	1667466..1668980	+	504	116618787	-	LEUM_1694	-	phosphoenolpyruvate carboxylase
1614	 34.43	-1	1669078..1669989	+	303	116618788	-	LEUM_1695	-	diacylglycerol kinase family protein
1615	 38.33	0	1670007..1670966	-	319	116618789	-	LEUM_1696	-	ADP-ribosylglycohydrolase
1616	 39.38	0	1670985..1672142	-	385	116618790	-	LEUM_1697	-	S-adenosylmethionine synthetase
1617	 35.51	0	1672504..1673331	+	275	116618791	-	LEUM_1698	-	hypothetical protein
1618	 39.15	0	1673377..1674270	-	297	116618792	-	LEUM_1699	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1619	 35.08	0	1674263..1675006	-	247	116618793	-	LEUM_1700	-	glycerophosphoryl diester phosphodiesterase
1620	 38.25	0	1675090..1675272	+	60	116618794	-	LEUM_1701	-	hypothetical protein
1621	 35.31	0	1675301..1675705	-	134	116618795	-	LEUM_1702	-	rhodanese-related sulfurtransferase
1622	 29.66	-2	1675772..1676479	-	235	116618796	-	LEUM_1703	-	adaptor protein
1623	 36.78	0	1676536..1676970	-	144	116618797	-	LEUM_1704	-	arsenate reductase
1624	 34.14	-1	1682489..1682860	-	123	116618798	-	LEUM_1709	-	hypothetical protein
1625	 33.59	-1	1682867..1683250	-	127	116618799	-	LEUM_1710	-	RNA-binding protein
1626	 38.95	0	1683323..1683910	-	195	116618800	-	LEUM_1711	-	peptidyl-prolyl cis-trans isomerase
1627	 38.03	0	1683950..1684162	-	70	116618801	-	LEUM_1712	-	DNA-directed RNA polymerase, subunit K/omega
1628	 40.20	0	1684173..1684769	-	198	116618802	-	LEUM_1713	-	guanylate kinase
1629	 33.94	-1	1685026..1685352	+	108	116618803	-	LEUM_1714	-	hypothetical protein
1630	 34.91	0	1685403..1686479	-	358	116618804	-	LEUM_1715	-	hypothetical protein
1631	 37.04	0	1686543..1686893	-	116	116618805	-	LEUM_1716	-	hypothetical protein
1632	 39.20	0	1687049..1689451	-	800	116618806	-	LEUM_1717	-	MutS family ATPase
1633	 36.78	0	1689510..1690031	-	173	116618807	-	LEUM_1718	-	membrane ancor connecting MutS2 with cell-division Z-ring
1634	 34.86	0	1690028..1690420	-	130	116618808	-	LEUM_1719	-	stimulator of FtsZ polymerization and component of cell-division Z-ring
1635	 29.37	-2	1690528..1690905	-	125	116618809	-	LEUM_1720	-	hypothetical protein
1636	 38.71	0	1691084..1691995	+	303	116618810	-	LEUM_1721	-	ribonuclease HIII
1637	 38.23	0	1692013..1692543	-	176	116618811	-	LEUM_1722	-	hypothetical protein
1638	 38.42	0	1692546..1692938	-	130	116618812	-	LEUM_1723	-	methyl-accepting chemotaxis-like protein
1639	 40.91	0	1693083..1694639	-	518	116618813	-	LEUM_1724	-	HD superfamily hydrolase
1640	 37.20	0	1694775..1695239	-	154	116618814	smpB	LEUM_1725	-	SsrA-binding protein
1641	 40.77	0	1695251..1697575	-	774	116618815	-	LEUM_1726	-	exoribonuclease R
1642	 39.66	0	1697681..1697917	-	78	116618816	-	LEUM_1727	-	preprotein translocase subunit SecG
1643	 39.92	0	1697995..1698768	-	257	116618817	-	LEUM_1728	-	rRNA methylase
1644	 36.36	0	1698828..1699751	-	307	116618818	-	LEUM_1729	-	preprotein translocase subunit YidC
1645	 38.46	0	1699823..1700095	-	90	116618819	-	LEUM_1730	-	acylphosphatase
1646	 39.24	0	1700082..1701182	-	366	116618820	-	LEUM_1731	-	Signal transduction histidine kinase
1647	 36.67	0	1701195..1701884	-	229	116618821	-	LEUM_1732	-	DNA-binding response regulator
1648	 35.71	0	1701981..1702526	-	181	116618822	-	LEUM_1733	-	metal-binding protein
1649	 38.45	0	1702528..1703700	-	390	116618823	-	LEUM_1734	-	hypothetical protein
1650	 34.13	-1	1703700..1704452	-	250	116618824	-	LEUM_1735	-	SAM-dependent methyltransferase
1651	 40.53	0	1704540..1704914	-	124	116618825	-	LEUM_1736	-	Iojap family protein
1652	 37.26	0	1704918..1705502	-	194	116618826	-	LEUM_1737	-	HD superfamily NAD metabolism hydrolase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.