IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1453	 32.66	-1	1529828..1531015	-	395	116618627	-	LEUM_1533	-	sortase (surface protein transpeptidase)
1454	 38.18	0	1531154..1532680	-	508	116618628	-	LEUM_1534	-	hypothetical protein
1455	 32.80	-1	1532670..1533794	-	374	116618629	-	LEUM_1535	-	hypothetical protein
1456	 37.21	0	1533791..1536553	-	920	116618630	-	LEUM_1536	-	von Willebrand factor domain-containing protein
1457	 31.90	-1	1537020..1538132	+	370	116618631	-	LEUM_1537	-	AraC family transcriptional regulator
1458	 41.07	0	1538212..1538793	-	193	116618632	-	LEUM_1538	-	ribonucleoside-triphosphate reductase class III activase subunit
1459	 39.57	0	1538729..1540939	-	736	116618633	-	LEUM_1539	-	anaerobic ribonucleoside triphosphate reductase
1460	 36.45	0	1541234..1542676	+	480	116618634	-	LEUM_1540	-	nicotinate phosphoribosyltransferase
1461	 43.43	+1	1542673..1543494	+	273	116618635	nadE	LEUM_1541	-	NAD synthetase
1462	 35.81	0	1543589..1544113	-	174	116618636	-	LEUM_1542	-	hypothetical protein
1463	 35.43	0	1544130..1544798	-	222	116618637	-	LEUM_1543	-	ABC-type cobalt transport system, permease component CbiQ related transporter
1464	 34.76	0	1544795..1546198	-	467	116618638	-	LEUM_1544	-	ABC-type cobalt transport system, ATPase component
1465	 39.93	0	1546212..1546802	-	196	116618639	-	LEUM_1545	-	ABC-type cobalt transport system, membrane component
1466	 38.72	0	1547324..1548028	+	234	116618640	-	LEUM_1546	-	putative transcription activator
1467	 39.01	0	1548116..1549189	-	357	116618641	-	LEUM_1547	-	histidinol phosphate aminotransferase
1468	 32.46	-1	1549173..1549517	-	114	116618642	-	LEUM_1548	-	phosphoribosyl-ATP pyrophosphatase
1469	 39.10	0	1549541..1549939	-	132	116618643	-	LEUM_1549	-	phosphoribosyl-AMP cyclohydrolase
1470	 42.75	+1	1549936..1550700	-	254	116618644	-	LEUM_1550	-	imidazole glycerol phosphate synthase subunit hisF
1471	 37.94	0	1550697..1551413	-	238	116618645	-	LEUM_1551	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1472	 38.51	0	1551410..1552027	-	205	116618646	-	LEUM_1552	-	imidazole glycerol phosphate synthase subunit hisH
1473	 40.48	0	1552079..1552666	-	195	116618647	-	LEUM_1553	-	imidazoleglycerol-phosphate dehydratase
1474	 39.98	0	1552668..1553945	-	425	116618648	-	LEUM_1554	-	histidinol dehydrogenase
1475	 40.11	0	1553942..1555549	-	535	116618649	-	LEUM_1555	-	ATP phosphoribosyltransferase regulatory subunit / ATP phosphoribosyltransferase catalytic subunit
1476	 30.44	-2	1555928..1557034	-	368	116618650	-	LEUM_1556	-	Signal transduction diguanylate cyclase
1477	 31.28	-1	1557028..1557756	-	242	116618651	-	LEUM_1557	-	C-di-GMP-specific phosphodiesterase
1478	 33.57	-1	1557848..1558690	-	280	116618652	-	LEUM_1558	-	histidinol-phosphatase
1479	 35.32	0	1558740..1559546	-	268	116618653	-	LEUM_1559	-	HAD superfamily hydrolase
1480	 33.89	-1	1559615..1559794	-	59	116618654	-	LEUM_1560	-	hypothetical protein
1481	 40.85	0	1559794..1561269	-	491	116618655	-	LEUM_1561	-	signal recognition particle subunit FFH/SRP54 (srp54)
1482	 33.91	-1	1561312..1561656	-	114	116618656	-	LEUM_1562	-	hypothetical protein
1483	 38.83	0	1561653..1562981	-	442	116618657	-	LEUM_1563	-	signal recognition particle-docking protein FtsY
1484	 37.77	0	1563051..1566608	-	1185	116618658	-	LEUM_1564	-	condensin subunit Smc
1485	 38.40	0	1566605..1567315	-	236	116618659	-	LEUM_1565	-	dsRNA-specific ribonuclease
1486	 39.40	0	1567427..1568794	-	455	116618660	-	LEUM_1566	-	phosphoglucosamine mutase
1487	 39.80	0	1568798..1569895	-	365	116618661	-	LEUM_1567	-	hypothetical protein
1488	 37.83	0	1569892..1570713	-	273	116618662	-	LEUM_1568	-	hypothetical protein
1489	 38.87	0	1570720..1572816	-	698	116618663	-	LEUM_1569	-	NhaP-type Na+/H+ and K+/H+ antiporter
1490	 40.96	0	1572820..1573698	-	292	116618664	-	LEUM_1570	-	UDP-N-acetylmuramate dehydrogenase
1491	 43.00	+1	1573889..1574302	-	137	116618665	-	LEUM_1571	-	nucleoside diphosphate kinase
1492	 34.57	0	1574367..1574933	-	188	116618666	-	LEUM_1572	-	hypothetical protein
1493	 35.53	0	1575081..1575308	-	75	116618667	-	LEUM_1573	-	hypothetical protein
1494	 22.92	-2	1575479..1575622	-	47	116618668	-	LEUM_1574	-	hypothetical protein
1495	 40.01	0	1575785..1577731	-	648	116618669	-	LEUM_1575	-	DNA mismatch repair protein MutL
1496	 38.67	0	1577736..1580300	-	854	116618670	-	LEUM_1576	-	DNA mismatch repair protein MutS
1497	 38.06	0	1580441..1581835	-	464	116618671	-	LEUM_1577	-	tRNA (uracil-5-)-methyltransferase related enzyme
1498	 39.72	0	1581916..1582902	-	328	116618672	-	LEUM_1578	-	putative lipid kinase
1499	 40.49	0	1582984..1584423	-	479	116618673	-	LEUM_1579	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
1500	 41.45	+1	1584439..1585905	-	488	116618674	-	LEUM_1580	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
1501	 38.23	0	1585907..1586233	-	108	116618675	-	LEUM_1581	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
1502	 42.96	+1	1586436..1586705	+	89	116618676	-	LEUM_1582	-	SSU ribosomal protein S15P
1503	 40.48	0	1586755..1587006	+	83	116618677	-	LEUM_1583	-	SSU ribosomal protein S20P
1504	 38.90	0	1587062..1588426	-	454	116618678	-	LEUM_1584	-	superfamily II DNA/RNA helicase
1505	 38.74	0	1588426..1589406	-	326	116618679	-	LEUM_1585	-	exopolyphosphatase-like protein
1506	 37.02	0	1589446..1590531	-	361	116618680	-	LEUM_1586	-	nucleotidyltransferase/DNA polymerase for DNA repair
1507	 37.23	0	1590579..1591580	-	333	116618681	-	LEUM_1587	-	DNA polymerase III, delta subunit
1508	 34.87	0	1591549..1593831	-	760	116618682	-	LEUM_1588	-	metallo-beta-lactamase superfamily hydrolase
1509	 36.79	0	1593833..1594468	-	211	116618683	-	LEUM_1589	-	DNA uptake protein related DNA-binding protein
1510	 39.47	0	1594533..1595624	-	363	116618684	-	LEUM_1590	-	Lon-like protease
1511	 37.63	0	1595608..1596096	-	162	116618685	-	LEUM_1591	-	phosphopantetheine adenylyltransferase
1512	 39.82	0	1596100..1596654	-	184	116618686	-	LEUM_1592	-	N6-adenine-specific methylase
1513	 30.93	-2	1596676..1596966	-	96	116618687	-	LEUM_1593	-	hypothetical protein
1514	 36.06	0	1596963..1598135	-	390	116618688	-	LEUM_1594	-	cell division membrane protein
1515	 41.67	+1	1598135..1599202	-	355	116618689	-	LEUM_1595	-	glutamyl aminopeptidase
1516	 41.78	+1	1599199..1599861	-	220	116618690	-	LEUM_1596	-	phosphoglycerate mutase
1517	 40.59	0	1600332..1601558	+	408	116618691	-	LEUM_1597	-	Na+-driven multidrug efflux pump
1518	 40.90	0	1601712..1603019	+	435	116618692	-	LEUM_1598	-	xanthine/uracil/vitamin C permease
1519	 38.19	0	1603073..1604740	-	555	116618693	-	LEUM_1599	-	DNA repair ATPase
1520	 38.38	0	1604777..1605232	-	151	116618694	-	LEUM_1600	-	ArgR family transcriptional regulator
1521	 36.92	0	1605225..1606061	-	278	116618695	-	LEUM_1601	-	rRNA methylase
1522	 37.05	0	1606058..1606972	-	304	116618696	-	LEUM_1602	-	farnesyl-diphosphate synthase
1523	 36.00	0	1606965..1607189	-	74	116618697	-	LEUM_1603	-	exodeoxyribonuclease VII small subunit
1524	 39.12	0	1607182..1608459	-	425	116618698	-	LEUM_1604	-	exodeoxyribonuclease VII large subunit
1525	 34.12	-1	1608879..1609133	+	84	116618699	-	LEUM_1605	-	hypothetical protein
1526	 35.39	0	1609144..1609629	-	161	116618700	-	LEUM_1606	-	hypothetical protein
1527	 40.35	0	1609744..1611069	-	441	116618701	-	LEUM_1607	-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
1528	 42.57	+1	1611124..1611957	-	277	116618702	-	LEUM_1608	-	purine operon repressor
1529	 37.75	0	1612061..1612852	-	263	116618703	-	LEUM_1609	-	ABC-type Mn2+/Zn2+ transport systems, permease component
1530	 38.87	0	1612845..1613549	-	234	116618704	-	LEUM_1610	-	ABC-type Mn/Zn transport systems, ATPase component
1531	 35.82	0	1613546..1614388	-	280	116618705	-	LEUM_1611	-	ABC-type metal ion transport system, periplasmic component/surface adhesin
1532	 38.21	0	1614436..1614681	-	81	116618706	-	LEUM_1612	-	hypothetical protein
1533	 36.15	0	1614786..1615673	-	295	116618707	-	LEUM_1613	-	dimethyladenosine transferase
1534	 41.05	0	1615675..1616244	-	189	116618708	-	LEUM_1614	-	ribonuclease M5
1535	 38.60	0	1616237..1617034	-	265	116618709	-	LEUM_1615	-	Mg-dependent DNase
1536	 35.02	0	1617127..1617540	-	137	116618710	-	LEUM_1616	-	NusB antitermination factor
1537	 39.07	0	1617540..1617992	-	150	116618711	-	LEUM_1617	-	hypothetical protein
1538	 38.68	0	1618115..1618675	-	186	116618712	-	LEUM_1618	-	translation elongation factor P (EF-P)
1539	 37.53	0	1618761..1619237	-	158	116618713	-	LEUM_1619	-	transcriptional regulator
1540	 38.41	0	1619241..1619792	-	183	116618714	-	LEUM_1620	-	Rossmann fold nucleotide-binding protein
1541	 25.00	-2	1619793..1619876	+	27	116618715	-	LEUM_1621	-	hypothetical protein
1542	 34.74	0	1619931..1620143	+	70	116618716	-	LEUM_1622	-	RNA-binding protein
1543	 40.34	0	1620143..1621825	+	560	116618717	-	LEUM_1623	-	mRNA degradation ribonuclease J1/J2enzyme
1544	 36.82	0	1622387..1622644	-	85	116618718	-	LEUM_1624	-	hypothetical protein
1545	 30.19	-2	1622758..1623234	+	158	116618719	-	LEUM_1625	-	hypothetical protein
1546	 28.81	-2	1623241..1623837	+	198	116618720	-	LEUM_1626	-	hypothetical protein
1547	 42.08	+1	1623878..1624060	-	60	116618721	-	LEUM_1627	-	hypothetical protein
1548	 41.58	+1	1624192..1625283	-	363	116618722	-	LEUM_1628	-	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
1549	 40.00	0	1625287..1625511	-	74	116618723	-	LEUM_1629	-	hypothetical protein
1550	 41.51	+1	1625529..1626335	-	268	116618724	-	LEUM_1630	-	hypothetical protein
1551	 34.71	0	1626347..1627438	-	363	116618725	-	LEUM_1631	-	hypothetical protein
1552	 38.97	0	1627435..1627860	-	141	116618726	-	LEUM_1632	-	hypothetical protein
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.